Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG30.6% 375.8 / 49.8 219T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (47/105);  new base G (67/0);  total (114/105)
Fisher's exact test for biased strand distribution p-value = 1.29e-25
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 223 total aligned reads displayed.

GCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568365‑4568641
                                                                                                                                           |                                                                                                                                           
gcagGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGt                                                                                                                                             >  2:2244197/1‑140 (MQ=255)
         aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg                                                                                                                                    <  1:317804/140‑1 (MQ=255)
           aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                  >  1:2754116/1‑140 (MQ=255)
            cTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTgg                                                                                                                                 <  1:2017592/140‑1 (MQ=255)
            cTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTgg                                                                                                                                 <  1:1622798/140‑1 (MQ=255)
               aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAt                                                                                                                              >  2:767540/1‑140 (MQ=255)
               aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAt                                                                                                                              >  1:1378089/1‑140 (MQ=255)
                cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATa                                                                                                                             <  2:2639031/140‑1 (MQ=255)
                cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGCggggta                                                                                                                             >  1:604807/1‑136 (MQ=255)
                      cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaaac                                                                                                                       <  1:888818/140‑1 (MQ=255)
                           aaaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTc                                                                                                                  <  2:649831/140‑1 (MQ=255)
                            aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                 <  1:1122888/140‑1 (MQ=255)
                                aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                 >  1:1221937/1‑136 (MQ=255)
                                aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                 <  2:1221937/136‑1 (MQ=255)
                                aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAAAAACTCCCTGt                                                                                                             >  2:710593/1‑140 (MQ=255)
                                  gTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGCAAAAAAAATGGAATAACAAAAAACTCCTTTTcc                                                                                                           >  1:233681/1‑140 (MQ=255)
                                   tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCg                                                                                                          <  1:586419/140‑1 (MQ=255)
                                   tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCg                                                                                                          <  2:1433999/140‑1 (MQ=255)
                                      cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                 >  1:2410346/1‑130 (MQ=255)
                                      cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGgag                                                                                                       <  2:2830950/140‑1 (MQ=255)
                                           tAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGGATAAAAAAAAAATCCTTGTCCGGAG‑AAccc                                                                                                 >  2:2720387/1‑140 (MQ=255)
                                                aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTTTCCGGAG‑AACCCCA‑ACg                                                                                           >  1:1149707/1‑140 (MQ=255)
                                                aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAAAAAAAAACTCCTTGTCCGGAG‑AAACCCA‑ACg                                                                                           >  2:2917402/1‑140 (MQ=255)
                                                  cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACggg                                                                                         <  1:1513828/140‑1 (MQ=255)
                                                  cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAAAAACACCTTGTCCGGAG‑AACCCCC‑ACcgg                                                                                         >  2:169617/1‑140 (MQ=255)
                                                  cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAAAAAAAAACTCCCTGTCCGGAG‑AACCCCA‑ACggg                                                                                         >  2:383069/1‑140 (MQ=255)
                                                  cccAGGCTGGATCAGAACCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAAATCCTTGTCCGGAG‑AACCCCA‑ACggg                                                                                         >  2:607977/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTTAAAAAACGCGGCATAAAAAACAACTCCTTTTTCGGGG‑GACCCCA‑ACgggg                                                                                        >  2:947212/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAAATCCTTGTCCGGAG‑AACCCCC‑ACgggg                                                                                        >  2:2014911/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAACAACTCCTTTTCCGGAG‑AAACCCC‑ACgggg                                                                                        >  1:1419711/1‑140 (MQ=255)
                                                    cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGa                                                                                       <  1:499206/140‑1 (MQ=255)
                                                     aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGGGGCATAAAAAAAAAAACCCTTTCCCGAG‑GACCCCC‑ACcgggga                                                                                      >  2:3353396/1‑138 (MQ=255)
                                                     aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGaa                                                                                      >  2:1763660/1‑140 (MQ=255)
                                                       gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGaaaa                                                                                    <  1:2223493/140‑1 (MQ=255)
                                                       gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCCTTTTCCGGGG‑AACCCCA‑ACGGGGgaaa                                                                                    >  2:2128330/1‑140 (MQ=255)
                                                       gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAAACCCTTTTCCGGAG‑GACCCCA‑AAGGGGaaaa                                                                                    >  2:1714693/1‑140 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACg                                                                                  <  2:941162/140‑1 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACg                                                                                  <  2:2754116/140‑1 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACg                                                                                  <  1:1459735/140‑1 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACg                                                                                  <  1:2244197/140‑1 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACg                                                                                  <  1:2598827/140‑1 (MQ=255)
                                                         tGGATCAGATCCGTCAACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACg                                                                                  <  1:1985044/140‑1 (MQ=255)
                                                         gggATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACg                                                                                  <  1:1067101/139‑1 (MQ=255)
                                                           gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGaa                                                                                >  1:438969/1‑140 (MQ=255)
                                                           gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAAAACCTTTTCCCGAGAAACCCCA‑CCGGGGAAAAcaa                                                                                 >  2:2102152/1‑138 (MQ=255)
                                                            aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGaaa                                                                               <  2:3274927/140‑1 (MQ=255)
                                                            aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAAAAAATCCTTTTCCGGGG‑AAACCCA‑ACGGGGAAAAAGaaa                                                                               >  2:1389255/1‑140 (MQ=255)
                                                                gATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCa                                                                           <  1:2128330/140‑1 (MQ=255)
                                                                 aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAACAACTCCTTTTCCGGAG‑AAACCCC‑ACGGGGGAAAAGAAAATCaa                                                                          >  2:2420095/1‑140 (MQ=255)
                                                                 aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAATGGCATAACAAACAACCCCTTTTCCGGAG‑AACCCCC‑ACAGGGGAAACAAAAATCaa                                                                          >  2:1111627/1‑140 (MQ=255)
                                                                 aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAACAACTCCTTTTCCGGAG‑AACCCCA‑ACGGGGGAAACGAAATTCaa                                                                          >  1:1875935/1‑140 (MQ=255)
                                                                 aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAACTCCCTGTCCGGAG‑AACCCCA‑ACGGGGAAAAAGAAATTTaa                                                                          >  1:2887350/1‑140 (MQ=255)
                                                                 aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAAAAAAAAACACCTTTTCCGGAG‑AAACCCC‑ACGGGGAAAAAGAAAATCaa                                                                          >  2:4345/1‑140 (MQ=255)
                                                                 aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAAAAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCaa                                                                          >  1:1297428/1‑140 (MQ=255)
                                                                     gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACATGGCCTAACAAACAACCCCCTGTCCGGGG‑AACCCCA‑AACGGGAAAAAGAAAATTAATAcc                                                                      >  2:1067101/1‑140 (MQ=255)
                                                                     gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAAAAAAAAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGGAAAAGAAAATCAAAAcc                                                                      >  2:2563779/1‑140 (MQ=255)
                                                                      tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAAAAAAAAACTCCTTGTCCGGAG‑AAACCCA‑ACGGGGGAAAAGAAAATCAATaacc                                                                     >  2:597496/1‑137 (MQ=255)
                                                                      tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCCTGTCCGGAG‑AAACCCA‑ACGGGGAAAAAGAAAATCAATACCg                                                                     >  1:913064/1‑140 (MQ=255)
                                                                      tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACACCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAAATCAATAccc                                                                     >  2:2544765/1‑139 (MQ=255)
                                                                      tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGGAAAAGAAAATCAATACCg                                                                     >  2:3233308/1‑140 (MQ=255)
                                                                      tCGACAGATACGCAGCAAAGTAATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGCATCAAAAACAACACCCTTTCCGGAG‑AAACCCACAAAGGGAAAA‑GAAAATCAAAAccc                                                                     >  2:2973982/1‑139 (MQ=255)
                                                                             aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTaa                                                              <  1:2715991/140‑1 (MQ=255)
                                                                             aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAACAACTCCTTTTCCGGAG‑AACCCCA‑ACGGGGAAAAAGAAAATTAATACCGTCGGGaa                                                              >  2:2592307/1‑140 (MQ=255)
                                                                                cGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGa                                                           <  2:1743274/140‑1 (MQ=255)
                                                                                  cagcaAAGTAATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg                                                         <  1:2973982/140‑1 (MQ=255)
                                                                                     caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                      <  1:3339578/140‑1 (MQ=255)
                                                                                       aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                    <  1:1349778/140‑1 (MQ=255)
                                                                                       aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                    <  1:1013533/140‑1 (MQ=255)
                                                                                        aGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAAAAAAAAAACCCTTGTTCGGGG‑GACCCCC‑ACGGGGGAAAAGAAAATTAAAACCGTCGGGAATGAAGaaaagg                                                   >  2:1612169/1‑137 (MQ=255)
                                                                                          tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGAG‑AACACCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAAGCAg                                                 >  1:1774462/1‑140 (MQ=255)
                                                                                            aTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGt                                               <  1:2102152/140‑1 (MQ=255)
                                                                                              gacagaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTga                                             <  1:1800054/135‑1 (MQ=255)
                                                                                              aCAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTga                                             <  1:1714693/140‑1 (MQ=255)
                                                                                               cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag                                            <  1:149335/140‑1 (MQ=255)
                                                                                                  aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg                                         <  2:1623531/140‑1 (MQ=255)
                                                                                                    tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAACAAATCCTTGTCCGGAG‑AACCCCC‑ACGGGGGAAACGAAAATCAATAACGTCGGGAATGACGAAAAGGAGGGGGGAAggg                                       >  2:1550859/1‑140 (MQ=255)
                                                                                                       aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaa                                    <  1:383069/140‑1 (MQ=255)
                                                                                                        cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACCCCTTTTCCGGAG‑AACCCCC‑ACGGGGGAAAAAAAAATTAATAACGTCGGGAATGACGAAAAGCAGGGGAGAAGGGCaaa                                   >  2:2269617/1‑139 (MQ=255)
                                                                                                        cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAACAACTCCCTGTCCGGGG‑AACCCCA‑ACGGGGGAAAAGAAAATCAAAACCCCCGGGAAAGAAGAAAAGCAGGggggaaggggaaa                                   >  2:187873/1‑139 (MQ=255)
                                                                                                          ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  1:2501182/140‑1 (MQ=255)
                                                                                                          ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  1:3148493/140‑1 (MQ=255)
                                                                                                          ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  1:710593/140‑1 (MQ=255)
                                                                                                          ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  2:3074278/140‑1 (MQ=255)
                                                                                                               gggAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTg                            <  2:1492860/140‑1 (MQ=255)
                                                                                                                  aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                         <  2:905952/140‑1 (MQ=255)
                                                                                                                    aaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAAt                       <  2:233681/140‑1 (MQ=255)
                                                                                                                        aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                   <  1:1278941/140‑1 (MQ=255)
                                                                                                                        aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                   <  2:1809811/140‑1 (MQ=255)
                                                                                                                          cGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAAATCCTTGTCCGGGG‑AACCCCA‑ACGGGGGAAACGAAATT‑AATACCGTCGGGAATGACGAAAGGCAGGGGAGAAGGGGAAAGAGACTGCAAATGTACTGa                >  2:1931074/1‑140 (MQ=255)
                                                                                                                            tGGCGGCATGGCGGGTAAAAAAACCTGGGATAACAAAAAACTTCTT‑TTTGGGG‑AACCCCC‑AATGGGGAAACGAAAATAAATACCCTTGGCCATAACGAAAGGCGGGGGAGAAGGGCAACCAGACTTCAAATGTACTGAAt              >  2:1281256/1‑140 (MQ=255)
                                                                                                                            tGGCGGCATGGCGGGGAAAAAAACGTGGGATAAAAAACAACTCCTTGTCCCGAG‑AACCCCA‑ACGGGGAAAACGAAAATCAATAACCTCGGGAAAGACGAAAGGCAGGGGAGAAGGGGAACCAGACTGCAAATGTACttta               >  2:1355180/1‑137 (MQ=255)
                                                                                                                             ggcggtATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAAt              <  1:1542020/140‑1 (MQ=255)
                                                                                                                               cggcATGGCGGGGAAAAAAAAGTGGCATAACAAAAAAATCCTTGTCCGGAG‑AACCCCC‑ACGGGGGAAACGAAAATCAATACCGTCGGGAATGACGAAAAGCAGGGGAGAAAGGCAACGAGACTGCCAAAGTACTGAAatt            >  2:459501/1‑140 (MQ=255)
                                                                                                                                   aTGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg        <  1:3169759/140‑1 (MQ=255)
                                                                                                                                   aTGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg        <  1:947212/140‑1 (MQ=255)
                                                                                                                                    tGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGC‑AATGTACTGAATTTCATGTa      <  1:252659/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  2:1297428/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:2286362/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  2:3163073/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  2:131640/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                           
GCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCA‑ACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568365‑4568641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑