Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,628,6490AC25.4% 260.8 / 30.4 126intergenic (+102/+206)nadR/ettADNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA
Reads supporting (aligned to +/- strand):  ref base A (82/12);  new base C (0/32);  total (82/44)
Fisher's exact test for biased strand distribution p-value = 2.54e-20
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 152 total aligned reads displayed.

GGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACA  >  NC_000913/4628511‑4628788
                                                                                                                                            |                                                                                                                                            
ggAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑c                                                                                                                                            >  1:169333/1‑140 (MQ=255)
       gTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACg                                                                                                                                     >  1:3123973/1‑140 (MQ=255)
        tGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGAT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACgg                                                                                                                                    >  1:1171658/1‑140 (MQ=255)
            ggAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGa                                                                                                                                >  2:1828257/1‑140 (MQ=255)
            ggAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGa                                                                                                                                >  2:304710/1‑140 (MQ=255)
                  gatgGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGc                                                                                                                                        >  1:2393374/1‑126 (MQ=255)
                  gatgGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGcc                                                                                                                          >  1:1901063/1‑140 (MQ=255)
                     gggggAGCAGAGATAACCGTGATGAAACTGCTAAAAGGCGAGGTATAAAATGATTTTTTTTGATGAGTTGAAACCCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAC‑CCTGCACGGGTGACCCGCCACg                                                                                                                       <  1:940726/140‑1 (MQ=255)
                          aGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAAtt                                                                                                                  >  2:1392305/1‑140 (MQ=255)
                            cAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGa                                                                                                                >  1:1658162/1‑140 (MQ=255)
                             agagATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGATTTTTTTTGATGAGTTAAAACCCTCTCTGGAAGAGGCT‑GTCGAAATTAAACAAGGTTT‑AAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAg                                                                                                               <  1:3169554/140‑1 (MQ=255)
                             agagATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAC‑CCTGCACGGGTGACCCGCCACGAAATTGAg                                                                                                               <  1:3334434/140‑1 (MQ=255)
                              aagaTAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTGGAGATAAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGCACCGCCACGAAATTGAgg                                                                                                              <  2:1700131/139‑1 (MQ=255)
                               agaTACCCGTGATAAAACTGCAAAAAGGCGGGTTATAAAAAGAGTTTTTTTGATGATATAAACCCCTCCCAGGAAG‑GGCTCAAGGAGAATAAAAAAGGTTT‑GAAAAAC‑CCGACACGGATGACCCGCCACGAAATTGAGGa                                                                                                             <  2:3342331/140‑1 (MQ=255)
                                 aTAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATg                                                                                                           >  1:51097/1‑140 (MQ=255)
                                  tAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGc                                                                                                          >  1:3284351/1‑140 (MQ=255)
                                   aaCCGTGATGAAACTGCTAAAAGGCGAGGTATAAAATGATTTTTTTTGATGATTTAAAACCCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCt                                                                                                         <  2:1267120/140‑1 (MQ=255)
                                     ccGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAACCCTCTCTGGAAGAGGCT‑GTCGAGATAAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTaa                                                                                                       <  1:1657825/140‑1 (MQ=255)
                                     ccGTAATGAAACTGCTAAAAGGGGAGGTAAAAAATGATTTTTTTTGATGATTAAAAACCCTCTCGGGAAGAGGTG‑GACGAGATAAAACAAGGTTA‑GAAAAAC‑CCTGCACGGGTCTCCCGCCACGAAATTGAGGATGCTaa                                                                                                       <  2:1658162/140‑1 (MQ=255)
                                      cGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAg                                                                                                      >  1:1523980/1‑140 (MQ=255)
                                      cGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAg                                                                                                      >  1:96577/1‑140 (MQ=255)
                                       gTGATGAAACTGCTCAAGGGCGGGGTAAAAAATGGTTTTTTTTGATGAGTTAAAACCCTCTCTGAAAGAGGCT‑GTCGAGATTAAAAAAGGTTT‑GAAAACC‑CCTGCGGGGGTCACCCGCCACGAAATTGAGGATGCTAAgg                                                                                                     <  2:3345491/140‑1 (MQ=255)
                                       gTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGATTTGAAACCCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAC‑CCTGCCCGGGTGACCCGCCACGAAATTGAGGATGCTAAgg                                                                                                     <  1:1309889/140‑1 (MQ=255)
                                       gTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAACCCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAC‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAgg                                                                                                     <  1:1486959/140‑1 (MQ=255)
                                       gTGATGAAACTGCTAAAAGGGGAGATATAAAATGATTTTTTTTGATGATTTAAAAACCTCTCTGGAGGAGGCT‑GTCGAAAATAACCAAGGTTT‑AAAAAAC‑CCTGCAGGGGTGACCCGCCACGAAATTGAGGATGCTAAgg                                                                                                     <  2:3030000/140‑1 (MQ=255)
                                         gatgaACGTTCTCAAAGGCGAGGTAAAAAATGTGTTTTTTTGATTAGTTAAAAACCTCTGTGGAAGAGGCT‑GTGGAGTTTAAACAGGTTTT‑GAAAAAC‑CTTGCCCGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCt                                                                                                   <  2:1753596/140‑1 (MQ=255)
                                         gatgaAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCt                                                                                                   >  1:1876016/1‑140 (MQ=255)
                                         gatgaAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCt                                                                                                   >  1:3340094/1‑140 (MQ=255)
                                         gatgaAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCt                                                                                                   >  2:601578/1‑140 (MQ=255)
                                         gatgaAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCt                                                                                                   >  1:1267120/1‑140 (MQ=255)
                                         gatgaAACTGCTAAAGGGCGAGGTAAAAAATGATTTTTTTTGATGATTTAAAACCCTCTCTGGAAGAGGCT‑GTCGAAATAAAACAAGGTTG‑AAAAAAC‑CCTGCAGGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCt                                                                                                   <  2:1563666/140‑1 (MQ=255)
                                          atgaAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCtg                                                                                                  >  2:2099793/1‑140 (MQ=255)
                                             aaaCTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATAAAACAAGGTTT‑AAAAAAC‑CCTGCAGGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCtgttg                                                                                               <  2:2358057/140‑1 (MQ=255)
                                              aaCTGCAAAAAGGCGAGGTATAAAATGATTTTTTTTGATGAGTTAAAACCCCCTCGGGAAGAGGCT‑GCCGAGATTAAACAAGGTTT‑GAAAAAC‑CCTCCGCGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCtgttgt                                                                                              <  2:1284049/140‑1 (MQ=255)
                                                   cTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCt                                                                                                         <  1:3152666/124‑1 (MQ=255)
                                                   cTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCt                                                                                                         >  2:3152666/1‑124 (MQ=255)
                                                   cTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGAcc                                                                                         >  1:2110475/1‑140 (MQ=255)
                                                      aagggCGAGGTAAAAAATGATTTTTTTTGATGAGTTGAAACCCTCTCGGGAAGGGGCT‑GTCGAGATAAAACAAGGTTT‑AAAAAAC‑CCTGCAGGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGa                                                                                      <  2:2762421/137‑1 (MQ=255)
                                                      aaaGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGa                                                                                      <  1:1105144/140‑1 (MQ=255)
                                                      aaaGGAGGGATATAAAATGAGTTTTTTTGATGACTTGAAAACCTCTCTGGAAGGGGCT‑GCCGAGATAAAACAGGTTTT‑GAAAAAA‑CCTGCCGGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGa                                                                                      <  2:3284351/140‑1 (MQ=255)
                                                       aaGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGaa                                                                                     >  2:1953298/1‑140 (MQ=255)
                                                         ggggAGGTAAAAAATGATTTTTTTTGATGATTTGAAACCCTTTCGGGAGGGGGCG‑GGAGAG‑TTAAAAAATGTTT‑TAAAAAACCCTGCAGGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAAc                                                                                   <  2:2493846/137‑1 (MQ=255)
                                                         ggCGAGGTATAAAATGATTTTTTTTGATGAGTTAAAACCCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGTTTT‑GAAAAAC‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAAc                                                                                   <  2:2541866/140‑1 (MQ=255)
                                                         ggCGAGGTAAAAAATGAGTTTTTTTGATGAGTTGAAACCCTCTCGGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑AAAAAAC‑CCTGCCCGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAAc                                                                                   <  1:2343430/140‑1 (MQ=255)
                                                         gacagggTAAAAAATGAGTTTTTTTGATGAGTTAAAACCCTCTCTGGAAGAGGCT‑GTCGAAATAAAAAAAGGTTT‑AAAAAAA‑CCTGCAGGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAAc                                                                                   <  2:2922843/135‑1 (MQ=255)
                                                          gCGAGGTAAAAAATGATTTTTTTTGATGAGTTGAAACCCTCTCTGGAAGAGGCT‑GTCGAGATAAAACAAGGTTT‑AAAAAAC‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACg                                                                                  <  2:3137932/140‑1 (MQ=255)
                                                             aGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGgtg                                                                               >  1:2541866/1‑140 (MQ=255)
                                                             aGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGgtg                                                                               >  1:2493846/1‑140 (MQ=255)
                                                                  taAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCAc                                                                          >  2:2598967/1‑140 (MQ=255)
                                                                         gttttttttGATGAGTTGAAACCCTCTTGGGAGGGGGCT‑GTGGA‑AATAAACAAAGTTTAGAAAACC‑CCTGCCGGGGGCACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCAt                                                                   <  2:3173254/138‑1 (MQ=255)
                                                                         aGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCAcgcctgtc                                                                   >  1:2922843/1‑136 (MQ=255)
                                                                         aGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCAt                                                                   >  1:882557/1‑140 (MQ=255)
                                                                          gTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATc                                                                  >  2:2613370/1‑140 (MQ=255)
                                                                                 tgatgaGTTAAAACCCTCTGGGGAAGGGGCT‑GTCGAGATAAAAAAAGGTTT‑AAAAAAC‑CCGGCAGGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCAtt                                                           <  2:1489283/140‑1 (MQ=255)
                                                                                   atgaGTTGAAACCCTCTCTGGAAGAGGCT‑GTCGAGATAAAACAAGTTTT‑AAAAAAC‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCg                                                         <  1:903188/140‑1 (MQ=255)
                                                                                    tgaGTTAAAACCCTCTCTGGAAGAGGCT‑GTCGAGATAAAACAAGGTTT‑AAAAAAC‑CCTGCACGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCgg                                                        <  1:491349/140‑1 (MQ=255)
                                                                                     gaGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGt                                                       >  1:2223366/1‑140 (MQ=255)
                                                                                        ttGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCt                                                    >  2:719007/1‑140 (MQ=255)
                                                                                         taaaacCCTCTCTGGAGGAGGTT‑GTGAAGATAAAACAAGGTTT‑AAAAAAC‑CCTGCAGGGGGGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTc                                                   <  2:2198015/138‑1 (MQ=255)
                                                                                               ccTCTCTGGAAGAGGCT‑GTCGAGATAAAAAAAGGTTT‑AAAAAAC‑CCTGCCCGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGcc                                             <  1:2221646/140‑1 (MQ=255)
                                                                                               ccTCTCTGGAAGAGCCT‑GCGGAGATAAAAAAAGGTTT‑AAAAAAA‑CCTCCGCGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGcc                                             <  1:2971477/140‑1 (MQ=255)
                                                                                               ccTCTCGGGAAGAGGCT‑GTGGAGATAAAACAGGTTTT‑AAAAAAC‑CCTGCAGGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGcc                                             <  2:1171658/140‑1 (MQ=255)
                                                                                                  ctctGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGa                                          >  1:1241837/1‑140 (MQ=255)
                                                                                                  ctctGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGa                                          >  1:2656243/1‑140 (MQ=255)
                                                                                                  ctctGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGa                                          >  1:568225/1‑140 (MQ=255)
                                                                                                  ctctGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGa                                          >  1:419145/1‑140 (MQ=255)
                                                                                                  ctctGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGa                                          >  2:1877568/1‑140 (MQ=255)
                                                                                                         aggggCT‑GTCGAGATAAAAAAAGGTTT‑GAAAAAC‑CCTGCAGGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACg                                   <  1:1537958/137‑1 (MQ=38)
                                                                                                          gagGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGc                                  >  1:2085663/1‑140 (MQ=255)
                                                                                                            ggCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCtt                                >  1:641189/1‑140 (MQ=255)
                                                                                                            ggCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCtt                                >  2:1876079/1‑140 (MQ=255)
                                                                                                            ggCT‑GTCGAGATTAAACAAGGTTT‑AAAAAAC‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCgccacgt                                <  1:1953298/140‑7 (MQ=37)
                                                                                                             gCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTa                               >  1:2105558/1‑140 (MQ=255)
                                                                                                              tt‑GTCGAGATAAAACAAGGTTA‑AAAAAAC‑CCTGCACGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTAc                              <  2:1241837/139‑1 (MQ=38)
                                                                                                               t‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTGGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTAcc                             >  1:750592/1‑140 (MQ=255)
                                                                                                               t‑GTCGAGATAAAAAAAGTTTT‑AAAAAAC‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTAcc                             <  1:1980175/140‑1 (MQ=38)
                                                                                                               cggccGAAATAAAACAAGTTTA‑AAAAAAA‑CCTGCAGGGAAAACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTAc                              <  2:419145/136‑1 (MQ=37)
                                                                                                                  tCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACcgc                           >  2:1410210/1‑140 (MQ=255)
                                                                                                                       aTTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCtt                      >  2:2129654/1‑140 (MQ=255)
                                                                                                                       aTTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCtt                      >  2:2267552/1‑140 (MQ=255)
                                                                                                                        ttAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTa                     >  2:1470536/1‑140 (MQ=255)
                                                                                                                         aaaaaaaGGTTA‑AAAAAAC‑CCTGCGGGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTAt                    <  2:445246/139‑1 (MQ=37)
                                                                                                                               ggtttt‑AAAAAAC‑CCTGCGGGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGcc              <  2:568225/137‑1 (MQ=37)
                                                                                                                               aGGTTT‑AAAAAAC‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGcc              <  1:1410210/140‑1 (MQ=255)
                                                                                                                                ggTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCt             >  1:1060793/1‑140 (MQ=255)
                                                                                                                                ggTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCt             >  1:594293/1‑140 (MQ=255)
                                                                                                                                ggTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCt             >  2:2032320/1‑140 (MQ=255)
                                                                                                                                agtttaaaaaaac‑CCGGCGCGGGTCCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGcc              <  2:1538622/133‑1 (MQ=37)
                                                                                                                                 gtgt‑GAAAAAG‑CCTCAGCGGGGGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTa            <  1:3298043/137‑1 (MQ=37)
                                                                                                                                 gTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTa            >  2:1102022/1‑140 (MQ=255)
                                                                                                                                 gTTT‑AAAAAAC‑CCTGCAGGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTa            <  1:304710/140‑1 (MQ=255)
                                                                                                                                 gTTT‑AAAAAAC‑CCTGCAGGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTa            <  1:674100/140‑1 (MQ=255)
                                                                                                                                 gTTT‑AAAAAAC‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTa            <  1:2081606/140‑1 (MQ=255)
                                                                                                                                  tttaaaaaaac‑CCGGCGGGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTa            <  2:882557/135‑1 (MQ=37)
                                                                                                                                  ttt‑GAAAAAC‑CCTGCACGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTAc           <  1:2613370/140‑1 (MQ=255)
                                                                                                                                   tt‑GAAAAAC‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACa          <  1:339278/140‑1 (MQ=255)
                                                                                                                                      gAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGt        >  1:92537/1‑140 (MQ=255)
                                                                                                                                       aaaaaa‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGtt       >  2:694825/1‑140 (MQ=255)
                                                                                                                                         aaac‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGtttt     <  1:1741813/140‑1 (MQ=255)
                                                                                                                                            a‑CCTGCCGGGGCGGCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACa  <  1:2551008/140‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                            
GGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCT‑GTCGAGATTAAACAAGGTTT‑GAAAAAA‑CCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACA  >  NC_000913/4628511‑4628788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑