BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	17,129	G→A	intergenic (+123/‑360)	sokC → / → nhaA	antisense RNA blocking mokC and hokC translation/Na(+):H(+) antiporter NhaA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	17,129	0	G	A	100.0%	537.5 / NA	150	intergenic (+123/‑360)	sokC/nhaA	antisense RNA blocking mokC and hokC translation/Na(+):H(+) antiporter NhaA
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (91/59); total (91/59)

Only 100 of 150 total aligned reads displayed.

ACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGACAACAAATTAATTATTACTTTTCC  >  NC_000913/16992‑17265

aCTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACg                                                                                                                                        >  2:2689831/1‑140 (MQ=255)

aCTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACg                                                                                                                                        >  1:3169300/1‑140 (MQ=255)

 cTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGt                                                                                                                                       >  2:1236946/1‑140 (MQ=255)

 cTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGt                                                                                                                                       <  1:197040/140‑1 (MQ=255)

      ggCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAAttt                                                                                                                                  >  1:163262/1‑140 (MQ=255)

                 ttCTGCCGTTCAGCTAATGCCTGAGACAGACAGCCTCAAGCCCCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGAttt                                                                                                                       <  1:764407/139‑1 (MQ=255)

                 aTCTGCCGTTCAGCTAATGCCTGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGAttt                                                                                                                       <  1:1105795/140‑1 (MQ=255)

                 aTCTGCCGTTCAGCTAATGCCTGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGAttt                                                                                                                       <  1:3360524/140‑1 (MQ=255)

                     gCCGTTCAGCTAATGCCTGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAatt                                                                                                                   >  1:1998774/1‑140 (MQ=255)

                     gCCGTTCAGCTAATGCCTGAGACAGACAGCCTCAAACACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGa                                                                                                                          >  2:893072/1‑133 (MQ=255)

                     gCCGTTCAGCTAATGCCTGAGACAGACAGCCTCAAACACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGa                                                                                                                          <  1:893072/133‑1 (MQ=255)

                       cGTTCAGCTAATGCCTGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAattat                                                                                                                 >  1:3307749/1‑140 (MQ=255)

                       cGTTCAGCTAATGCCTGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAattat                                                                                                                 >  1:308565/1‑140 (MQ=255)

                          tCAGCTAATGCCTGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTa                                                                                                              >  1:950648/1‑140 (MQ=255)

                            aGCTAATGCCTGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAAc                                                                                                            >  2:1521404/1‑140 (MQ=255)

                               tAATGCCTGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACttt                                                                                                         <  1:3140197/140‑1 (MQ=255)

                                 aTGCCTGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTaa                                                                                                       >  2:2680986/1‑140 (MQ=255)

                                      tGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTAt                                                                                                  >  1:2498281/1‑140 (MQ=255)

                                        agacagacAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTAtct                                                                                                >  1:2836735/1‑140 (MQ=255)

                                        agacagacAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTAtct                                                                                                >  1:891468/1‑140 (MQ=255)

                                        agacagacAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTAtct                                                                                                <  2:308565/140‑1 (MQ=255)

                                             aacccccTCAACCCCCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCa                                                                                           <  2:3267366/135‑1 (MQ=255)

                                              acagCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCAt                                                                                          <  1:2217665/140‑1 (MQ=255)

                                              acagCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCAt                                                                                          >  1:2095038/1‑140 (MQ=255)

                                              acagCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCAt                                                                                          >  1:2542400/1‑140 (MQ=255)

                                              acagCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCAt                                                                                          <  1:2680986/140‑1 (MQ=255)

                                                   cTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCaa                                                                                     >  1:1802315/1‑140 (MQ=255)

                                                    tCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCAt                                                                                          >  1:2789374/1‑134 (MQ=255)

                                                    tCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCAt                                                                                          <  2:2789374/134‑1 (MQ=255)

                                                    tCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAat                                                                                    >  2:3205948/1‑140 (MQ=255)

                                                       aGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAattat                                                                                 >  2:1284186/1‑140 (MQ=255)

                                                           cccGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTgac                                                                             <  1:2565180/140‑1 (MQ=255)

                                                            ccgccgCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTgacg                                                                            >  2:1269947/1‑140 (MQ=255)

                                                            ccgccgCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTgacg                                                                            >  1:655836/1‑140 (MQ=255)

                                                            ccgccgCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTgacg                                                                            >  2:2962949/1‑140 (MQ=255)

                                                              gccgcTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTgacgac                                                                          >  1:2364339/1‑140 (MQ=255)

                                                                cgcTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACaa                                                                        <  1:2962949/140‑1 (MQ=255)

                                                                 gcTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAg                                                                       <  1:2124026/140‑1 (MQ=255)

                                                                   tattatATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACTTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCt                                                                     >  1:2332838/1‑140 (MQ=255)

                                                                             ctctctTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTAtttt                                                           >  1:1481438/1‑140 (MQ=255)

                                                                             ctctctTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTAtttt                                                           >  1:1185859/1‑140 (MQ=255)

                                                                             ctctctTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTAtttt                                                           >  1:2170417/1‑140 (MQ=255)

                                                                             ctctctTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTAtttt                                                           >  2:1684408/1‑140 (MQ=255)

                                                                             ctctctTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTAtttt                                                           >  2:2968004/1‑140 (MQ=255)

                                                                               ctctTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTg                                                         >  1:105514/1‑140 (MQ=255)

                                                                               ctctTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTg                                                         <  2:3289269/140‑1 (MQ=255)

                                                                               ctctTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTg                                                         <  2:1481438/140‑1 (MQ=255)

                                                                               ctctTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTg                                                         >  1:2747691/1‑140 (MQ=255)

                                                                               ctctTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTg                                                         >  2:3063613/1‑140 (MQ=255)

                                                                                  tttAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGaaa                                                      >  2:842742/1‑140 (MQ=255)

                                                                                  tttAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGaaa                                                      >  1:1653636/1‑140 (MQ=255)

                                                                                    tAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAata                                                    <  2:2747691/140‑1 (MQ=255)

                                                                                    tAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAata                                                    <  1:665737/140‑1 (MQ=255)

                                                                                    tAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAata                                                    <  2:105514/140‑1 (MQ=255)

                                                                                     aaCCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAatat                                                   <  1:3256233/140‑1 (MQ=255)

                                                                                      aCCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATAtt                                                  <  1:93861/140‑1 (MQ=255)

                                                                                         cATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGc                                               <  2:910390/140‑1 (MQ=255)

                                                                                         cATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGc                                               <  1:842742/140‑1 (MQ=255)

                                                                                         cATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTAGc                                               <  2:1653636/140‑1 (MQ=255)

                                                                                          aTTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTg                                                         >  1:2716820/1‑129 (MQ=255)

                                                                                            tttGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTa                                            >  2:1155717/1‑140 (MQ=255)

                                                                                            tttGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTa                                            >  1:990065/1‑140 (MQ=255)

                                                                                            tttGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTa                                            >  1:297984/1‑140 (MQ=255)

                                                                                            tttGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTa                                            >  2:3145275/1‑140 (MQ=255)

                                                                                            tttGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTa                                            >  1:353856/1‑140 (MQ=255)

                                                                                            tttGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTa                                            >  2:1446213/1‑140 (MQ=255)

                                                                                            tttGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTa                                            >  2:472764/1‑140 (MQ=255)

                                                                                            tttGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTA‑TTTTGAAata                                                    <  2:1913659/131‑1 (MQ=255)

                                                                                             ttGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTaa                                           <  2:647817/140‑1 (MQ=255)

                                                                                                 tttATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTgg                                                <  1:2937049/131‑1 (MQ=255)

                                                                                                 tttATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTgg                                                >  2:2937049/1‑131 (MQ=255)

                                                                                                   tATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCa                                     >  2:2186313/1‑140 (MQ=255)

                                                                                                    aTCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCAt                                    >  2:1830488/1‑140 (MQ=255)

                                                                                                       gATTCTAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGc                                 <  2:3224936/140‑1 (MQ=255)

                                                                                                            tAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACt                            <  1:1446213/140‑1 (MQ=255)

                                                                                                            tAATCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACt                            <  1:3273549/140‑1 (MQ=255)

                                                                                                              aTCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGa                          >  2:613455/1‑140 (MQ=255)

                                                                                                               tCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACt                            >  1:3207286/1‑137 (MQ=255)

                                                                                                               tCCTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACt                            <  2:3207286/137‑1 (MQ=255)

                                                                                                                 cTGAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGacaa                       <  1:1242054/140‑1 (MQ=255)

                                                                                                                   gAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGacaaca                     >  1:1533024/1‑140 (MQ=255)

                                                                                                                   gAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGacaaca                     >  1:1542712/1‑140 (MQ=255)

                                                                                                                   gAAGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGacaaca                     >  1:1786350/1‑140 (MQ=255)

                                                                                                                    aaGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGa                              >  1:194092/1‑130 (MQ=255)

                                                                                                                    aaGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGa                              <  2:194092/130‑1 (MQ=255)

                                                                                                                    aaGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGAcaacaa                    >  2:689479/1‑140 (MQ=255)

                                                                                                                     aGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGACAACaaa                   <  2:2536751/140‑1 (MQ=255)

                                                                                                                     aGACGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGACAACaaa                   <  1:1729250/140‑1 (MQ=255)

                                                                                                                        cGCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGACAACAaatta                >  1:1851377/1‑140 (MQ=255)

                                                                                                                         gCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGACAACAaattaa               >  2:372542/1‑140 (MQ=255)

                                                                                                                         gCCTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGACAACAaattaa               >  2:2353006/1‑140 (MQ=255)

                                                                                                                         gCCTCGCA‑TTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGACAACAaattaat              >  2:853471/1‑140 (MQ=255)

                                                                                                                           cTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGACAACAaattaatt             >  1:615175/1‑140 (MQ=255)

                                                                                                                           cTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGACAACAaattaatt             >  1:1215132/1‑140 (MQ=255)

                                                                                                                           cTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGACAACAaattaatt             >  2:1579705/1‑140 (MQ=255)

                                                                                                                           cTCGCATTTTTGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGACAACAaattaatt             >  1:1477160/1‑140 (MQ=255)

                                                                                                                                 tttttGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGACAACAAATTAATTATTACt       <  1:472764/140‑1 (MQ=255)

                                                                                                                                   tttGTGACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGACAACAAATTAATTATTACttt     >  2:2058798/1‑140 (MQ=255)

                                                                                                                                     tgtgACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGACAACAAATTAATTATTACTTTTc   <  2:2484875/140‑1 (MQ=255)

                                                                                                                                      gtgACGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGACAACAAATTAATTATTACTTTTcc  <  1:3078067/140‑1 (MQ=255)

ACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGACAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCTTTAACCCATTTTGTTTTATCGATTCTAATCCTGAAGACGCCTCGCATTTTTGTGGCGTAATTTTTTAATGATTTAATTATTTAACTTTAATTTATCTCTTCATCGCAATTATTGACGACAAGCTGGATTATTTTTGAAATATTGGCCTAACAAGCATCGCCGACTGACAACAAATTAATTATTACTTTTCC  >  NC_000913/16992‑17265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`