Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG39.1% 218.5 / 51.2 164T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (31/67);  new base G (63/0);  total (97/67)
Fisher's exact test for biased strand distribution p-value = 1.81e-21
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 168 total aligned reads displayed.

CAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568366‑4568641
                                                                                                                                          |                                                                                                                                         
cagGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTa                                                                                                                                          >  1:157010/1‑140 (MQ=255)
   gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaa                                                                                                                                       >  2:1343466/1‑140 (MQ=255)
          aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                <  1:1343466/140‑1 (MQ=255)
              aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAt                                                                                                                            >  1:1015056/1‑140 (MQ=255)
               cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATa                                                                                                                           >  1:738350/1‑140 (MQ=255)
               cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATa                                                                                                                           >  2:1679964/1‑140 (MQ=255)
               cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATa                                                                                                                           >  2:337120/1‑140 (MQ=255)
                  cGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaaca                                                                                                                        <  1:1720046/140‑1 (MQ=255)
                    gCATTAAAATCACGTACCACATTAAGGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATaacaaa                                                                                                                      >  1:569798/1‑140 (MQ=255)
                     cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaaac                                                                                                                     >  1:2167859/1‑140 (MQ=255)
                      aTTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg                                                                                                                                  >  2:1293510/1‑126 (MQ=255)
                      aTTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaaaca                                                                                                                    <  1:1745323/140‑1 (MQ=255)
                      aTTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAATGGCATaacaaaca                                                                                                                    >  2:421131/1‑140 (MQ=255)
                                cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTc                                                                                                          <  1:742053/140‑1 (MQ=255)
                                  tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCg                                                                                                        <  1:2140698/140‑1 (MQ=255)
                                  acagacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCg                                                                                                        <  1:2217454/136‑1 (MQ=255)
                                  acagacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCg                                                                                                        <  1:2192712/136‑1 (MQ=255)
                                  acagacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCg                                                                                                        <  1:2085182/136‑1 (MQ=255)
                                     cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGgag                                                                                                     <  2:502690/140‑1 (MQ=255)
                                     cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAAGGCATAAAAAAAAAATCCCTTTCCGgag                                                                                                     >  2:1321380/1‑140 (MQ=255)
                                      acaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAAAAAACAACACCCTTTCCGgaga                                                                                                    >  2:218142/1‑140 (MQ=255)
                                       gagacaggATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGaa                                                                                                   <  1:147620/133‑1 (MQ=255)
                                       caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAAAAACCCCTTGTTCGGAGaa                                                                                                   >  2:781910/1‑140 (MQ=255)
                                        aTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAACGGCATAAAAAAAAAATCCTTGTCCGGGGAAc                                                                                                  >  2:172289/1‑140 (MQ=255)
                                        aTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAAAGGCATAACAAACAACACCCTTTCCGGAGaaa                                                                                                  >  2:1910033/1‑139 (MQ=255)
                                               aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAACGGGCATAACAAAAAACTCCTTGTCCGGGGAAACCCAACg                                                                                           >  2:2162207/1‑140 (MQ=255)
                                               aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGGGAACCCCCACg                                                                                           >  2:67769/1‑140 (MQ=255)
                                               aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGGGAAACCCCACg                                                                                           >  2:1357705/1‑140 (MQ=255)
                                               aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAACACCCTTTCCGGAGAACCCCCACg                                                                                           >  1:1023076/1‑140 (MQ=255)
                                               aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAAACCCTTGTCCGGGGAAACCCAACg                                                                                           >  2:270436/1‑140 (MQ=255)
                                               aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCATAACAAAAAAAACCTTGTCCGGAGGAACCCAACg                                                                                           >  1:75140/1‑140 (MQ=255)
                                               aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGGATAAAAAAAAACTCCCTGTCCCGAGGACCCCAACg                                                                                           >  2:864699/1‑140 (MQ=255)
                                                 cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAAAAACCCCCTTTCCGGGGAACCCCCACggg                                                                                         >  2:965533/1‑140 (MQ=255)
                                                 cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAAAAAAAAACTCCTTGTCCGGGGAACCCCAActgt                                                                                         >  2:2217454/1‑137 (MQ=255)
                                                 cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGGATAAAAAAAAACACCTTGTCCGGGGGACCCCAACggg                                                                                         >  2:889301/1‑140 (MQ=255)
                                                 cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAAAAAAAAAAACCTTTTCCCGAGAAACCCCAcacc                                                                                         >  2:1866023/1‑137 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGAGGGATAACAAAAAAATCCTTGTCCGGAGAACCCCAACgggg                                                                                        >  2:2206363/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACGGGCATAAAAAACAAAACCCTTTCCGGGGGAACCCAAAgggg                                                                                        >  2:2189330/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAAGGCATAAAAAAAAACACCCTTTCCGGAGGACCCCCACgggg                                                                                        >  2:1283233/1‑140 (MQ=255)
                                                   cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGa                                                                                       <  2:1423534/140‑1 (MQ=255)
                                                   cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGa                                                                                       <  2:903906/140‑1 (MQ=255)
                                                   cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGa                                                                                       <  2:1015056/140‑1 (MQ=255)
                                                      gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAAAGGGGaaaa                                                                                    >  1:940206/1‑140 (MQ=255)
                                                      gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAAAAACTCCTTGTCCGGAGAACCCCAAAGGGGgaaa                                                                                    >  2:1664609/1‑140 (MQ=255)
                                                        tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg                                                                                  <  1:1623332/140‑1 (MQ=255)
                                                        tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg                                                                                  <  1:1500986/140‑1 (MQ=255)
                                                        tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg                                                                                  <  2:2342551/140‑1 (MQ=255)
                                                        tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg                                                                                  <  1:965533/140‑1 (MQ=255)
                                                        tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg                                                                                  <  1:640318/140‑1 (MQ=255)
                                                        tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg                                                                                  <  1:1633101/140‑1 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGAGAACCCCAACGGGGGAAAAGaa                                                                                >  2:286051/1‑140 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTTTCCGGAGAACCCCCACGGGGGAAAAGaa                                                                                >  1:703491/1‑140 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAAACCCTTGTCCGGAGAAACCCAAAGGGGGAAACGaa                                                                                >  2:816470/1‑140 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCATAACAAAAAAATCCTTGTCCGGAGGACCCCAAAGGGGGAAAAGaa                                                                                >  2:1986885/1‑140 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAAAAACACCTTGTCCGGAGAACCCCAACGGGGGAAAAGaaa                                                                               >  2:2079012/1‑140 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAAAAAAAAACCCCTTGTCCGGAGAAACCCAACGGGGGAAAAGaaa                                                                               >  1:2041963/1‑140 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGAGGCAAAAAAAAAAACACCCTGTCCGGGGAACCCCAACGGGGAAAACGaaa                                                                               >  2:1109177/1‑140 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGAGAACCCCAACGGGGGAAAAGaaa                                                                               >  1:1265807/1‑140 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCCAAACAAAAAACTCCTTTTGCCGAGAAACCCCACGGGGAAAACaaaa                                                                               >  1:1387832/1‑140 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAAAAAATCCCTGTTCGGAGAACCCCCACGGGGGAAAAGaaa                                                                               >  2:1960023/1‑140 (MQ=255)
                                                                aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCaa                                                                          <  2:2225283/140‑1 (MQ=255)
                                                                aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGAGAACCCCAACGGGGGAAACGAAATTCaa                                                                          >  1:1509435/1‑140 (MQ=255)
                                                                aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAAAGAAAATCaa                                                                          >  1:1587641/1‑140 (MQ=255)
                                                                 tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAATGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAAt                                                                         <  1:286051/140‑1 (MQ=255)
                                                                  ccGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATa                                                                        <  1:2352894/140‑1 (MQ=255)
                                                                   cGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATAc                                                                       <  1:1216616/140‑1 (MQ=255)
                                                                    gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAAAGAAAATCaaaaac                                                                      >  2:241907/1‑136 (MQ=255)
                                                                    gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGCAAAAAAAAGTGGCATAAAAAACAACCCCTTTTCCGGAGAACCCCAACCGGGGAAACAAAAATCAATAcc                                                                      >  2:1069355/1‑140 (MQ=255)
                                                                     tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGGATAAAAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCg                                                                     >  2:492346/1‑140 (MQ=255)
                                                                          aGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGGGGCATAACAAAAAAATCCTTGTCCGGAGAACCCCAACGGGGGAAAAGAAAATCAATACCGTCggg                                                                >  2:2152897/1‑139 (MQ=255)
                                                                            aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGAGAACCCCCACGGGGAAAAAGAAAATCAAAACCGTCGGGaa                                                              >  2:1329597/1‑140 (MQ=255)
                                                                                      aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                    <  1:2152897/140‑1 (MQ=255)
                                                                                      aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAAAAAACAACTCCTTGTCCGGGGAAACCCAACGGGGGAAAAGAAAATCAATAACCTCGGTAATGACGaaaag                                                    >  2:1312142/1‑138 (MQ=255)
                                                                                      aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAAATCCCTGTCCGGGGAACCCCAACAGGGGAAAAGAAATTCAAAACCGTCGGGAATGACGaaaag                                                    >  2:6419/1‑138 (MQ=255)
                                                                                        gTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCCTGTGCGGAGAACCCCAACGGGGAAAAAGAAAATCAATACCGTCGGGAATGACGAAAGACa                                                  >  2:1871907/1‑140 (MQ=255)
                                                                                         tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAAAAAATCCTTGTCCGGAGAAACCCAACGGGGGAAACGAAAATCAAAACCGTCGGGAATGACGaaaaggag                                                 >  2:1369142/1‑135 (MQ=255)
                                                                                            tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAACAAATCCTTGTCCGGGGAACCCCAACGGGGAAAAAGAAAATCAATACCGTCGGGAATGACGAAAAGCAgggg                                              >  2:92247/1‑138 (MQ=255)
                                                                                               aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                           <  1:1146221/140‑1 (MQ=255)
                                                                                                   tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCATAACAAAAAACTCCTTGTCCGGGGAACCCCAACGGGGGAAAAGAAAATCAAAACCGTCGGGAATGACGAAAAGCAGGGGAGAAggg                                       >  2:2014926/1‑140 (MQ=255)
                                                                                                    cAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGc                                      <  1:948278/140‑1 (MQ=255)
                                                                                                        gCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCGAAAAAAACAACTCCATCGCCCGGGAACCCCCAAGGGGGAAACGAAAATCAATACCCCCGGAAATGACGGAAAGCAGGGGAGAAAGGCAAcc                                  >  2:1058257/1‑139 (MQ=255)
                                                                                                         ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  1:816470/140‑1 (MQ=255)
                                                                                                         ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  1:1883349/140‑1 (MQ=255)
                                                                                                            tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                              <  1:315882/140‑1 (MQ=255)
                                                                                                            tCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAAATCCTTGTCCCGGGAAACCCCACGGGGGAAAAGAAAATCAAAACCGTCGGTAATGACGAAAAGCAGGGGGGAAGGGGAACgagaa                              >  2:733827/1‑139 (MQ=255)
                                                                                                                 aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                         <  2:1544132/140‑1 (MQ=255)
                                                                                                                      cAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTa                    <  1:1783400/140‑1 (MQ=255)
                                                                                                                       aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                   <  1:1848679/140‑1 (MQ=255)
                                                                                                                        gCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt                  <  2:1491074/140‑1 (MQ=255)
                                                                                                                         cGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGGAAACGAAAATCAAAACCCTCGGGAATGACGAAAAGCAGGGGAGAAGGGGAACGAGACTGCAAAAGTACTg                 >  2:1843570/1‑140 (MQ=255)
                                                                                                                             gcggcATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAAtt             <  1:1636948/140‑1 (MQ=255)
                                                                                                                                gcATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCa          <  1:1304427/140‑1 (MQ=255)
                                                                                                                                  aTGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg        <  1:1369142/140‑1 (MQ=255)
                                                                                                                                  aTGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg        <  2:319970/140‑1 (MQ=255)
                                                                                                                                    ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  2:2061961/140‑1 (MQ=255)
                                                                                                                                    ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:781910/140‑1 (MQ=255)
                                                                                                                                    ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:342259/140‑1 (MQ=255)
                                                                                                                                      cGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt    <  1:1910033/140‑1 (MQ=255)
                                                                                                                                      cGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt    <  2:365566/140‑1 (MQ=255)
                                                                                                                                        ggTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCa  <  2:115751/140‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                         
CAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568366‑4568641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑