BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3363001 =	127 (1.460)	146 (1.690)	73/274	0.0	69.8%	coding (195/2382 nt)	yhcD	putative fimbrial usher protein YhcD
*	?	NC_000913	3766087 =	0 (0.000)	146 (1.690)	73/274	0.0	69.8%	coding (3905/4134 nt)	rhsA	rhs element protein RhsA

Only 100 of 276 total aligned reads displayed.

TGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362866‑3363140

tGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑Taa                                                                                                                                         >  1:440195/1‑140 (MQ=255)

          aagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGaaaa                                                                                                                               <  2:135312‑M1/15‑1 (MQ=255)

           agtacgtcacatctgtcgcgttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGaaaaa                                                                                                                              >  2:158676‑M1/125‑140 (MQ=255)

              acgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGaaaaaaaa                                                                                                                           >  1:1338942‑M1/122‑140 (MQ=255)

               cgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAg                                                                                                                          <  1:315053‑M1/20‑1 (MQ=255)

                tacgtcactgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAgg                                                                                                                         >  2:512760‑M1/120‑140 (MQ=255)

                aTTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAgg                                                                                                                         <  2:736096/140‑1 (MQ=255)

                 tcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAATAAAAGGc                                                                                                                        <  2:815927‑M1/22‑1 (MQ=255)

                  tGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCa                                                                                                                       >  1:686652/1‑140 (MQ=255)

                  cacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtaattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCa                                                                                                                       <  1:98353‑M1/23‑1 (MQ=255)

                   gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCaa                                                                                                                      >  1:480315/1‑140 (MQ=255)

                   gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCaa                                                                                                                      >  1:233137/1‑140 (MQ=255)

                   gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCaa                                                                                                                      >  1:948066/1‑140 (MQ=255)

                   gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCaa                                                                                                                      >  2:682428/1‑140 (MQ=255)

                   gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCaa                                                                                                                      >  2:593557/1‑140 (MQ=255)

                     atctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACa                                                                                                                    >  2:643792‑M1/115‑140 (MQ=255)

                               ttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcgttgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTAcgcg                                                                                                          <  1:1315868‑M1/36‑1 (MQ=255)

                               ttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTAcgcg                                                                                                          <  2:299848‑M1/36‑1 (MQ=255)

                                  gATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCtt                                                                                                       <  1:425742/140‑1 (MQ=255)

                                      ccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTtgat                                                                                                   >  2:695402‑M1/98‑140 (MQ=255)

                                       ggAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTtgatg                                                                                                  >  1:268827/1‑140 (MQ=255)

                                                 gaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGa                                                                                        >  1:512962‑M1/87‑140 (MQ=255)

                                                 aaaTCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGa                                                                                        >  2:626394/1‑140 (MQ=255)

                                                    tctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     <  2:241524‑M1/57‑1 (MQ=255)

                                                    tCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     <  1:1275548/140‑1 (MQ=255)

                                                      aCTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAttt                                                                                   >  2:1409119/1‑140 (MQ=255)

                                                      aCTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAttt                                                                                   >  1:81808/1‑140 (MQ=255)

                                                       gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                  <  2:576410‑M1/60‑1 (MQ=255)

                                                       gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                  <  1:635840‑M1/60‑1 (MQ=255)

                                                       cTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                  >  2:1362202/1‑140 (MQ=255)

                                                       cTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                  >  1:192527/1‑140 (MQ=255)

                                                                  tgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAgg                                                                       <  2:390651‑M1/71‑1 (MQ=255)

                                                                  tgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAgg                                                                       >  1:625105‑M1/70‑140 (MQ=255)

                                                                   ccTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGc                                                                      <  1:857269/140‑1 (MQ=255)

                                                                     tAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAt                                                                    >  2:289676/1‑140 (MQ=255)

                                                                     tAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAt                                                                    >  2:767503/1‑140 (MQ=255)

                                                                     cattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAt                                                                    <  2:1258791‑M1/74‑1 (MQ=255)

                                                                      aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGc                                                                      >  2:1030710/1‑137 (MQ=255)

                                                                      aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGc                                                                      <  1:1030710/137‑1 (MQ=255)

                                                                        tgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTc                                                                 <  1:1369323‑M1/77‑1 (MQ=255)

                                                                             cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:75696/1‑140 (MQ=255)

                                                                             cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:1181421/1‑140 (MQ=255)

                                                                             cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:1185580/1‑140 (MQ=255)

                                                                             cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:953654/1‑140 (MQ=255)

                                                                             cGCATTATTTTTCCCGGTCAGCCCGTTTTTTGCTAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:1058632/1‑140 (MQ=255)

                                                                              gatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaac                                                           <  2:1033790‑M1/83‑1 (MQ=255)

                                                                               cATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaaca                                                          >  1:498790/1‑140 (MQ=255)

                                                                               atcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaaca                                                          <  1:1357427‑M1/84‑1 (MQ=255)

                                                                                  agttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       >  2:1152727‑M1/54‑140 (MQ=255)

                                                                                  agttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       >  1:100421‑M1/54‑140 (MQ=255)

                                                                                  agttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       >  2:835127‑M1/54‑140 (MQ=255)

                                                                                   attTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGcc                                                      <  1:1198706/140‑1 (MQ=255)

                                                                                    ttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCg                                                     <  2:28556‑M1/89‑1 (MQ=255)

                                                                                      tttCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGt                                                   <  2:944005/140‑1 (MQ=255)

                                                                                      atccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGt                                                   <  2:1283161‑M1/91‑1 (MQ=255)

                                                                                            gtgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  1:1351981‑M1/97‑1 (MQ=255)

                                                                                             tgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaaa                                            <  2:934738‑M1/98‑1 (MQ=255)

                                                                                             tgtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaaa                                            >  1:815927‑M1/43‑140 (MQ=255)

                                                                                              tCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           <  1:809454/140‑1 (MQ=255)

                                                                                              gtctgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           <  1:923990‑M1/99‑1 (MQ=255)

                                                                                                 tgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTcc                                        <  2:211326‑M1/102‑1 (MQ=255)

                                                                                                 tgcaacatttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTcc                                        <  2:1439087‑M1/102‑1 (MQ=255)

                                                                                                     gTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCt                                    <  2:547737/140‑1 (MQ=255)

                                                                                                      ttttttGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTg                                   <  1:1071097/140‑1 (MQ=255)

                                                                                                       atttccacgagaagctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTga                                  <  1:212216‑M1/108‑1 (MQ=255)

                                                                                                         tttGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaag                                <  1:767503/140‑1 (MQ=255)

                                                                                                                   agctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATgg                      <  1:879043‑M1/120‑1 (MQ=255)

                                                                                                                    gctatcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGc                     <  1:356644‑M1/121‑1 (MQ=255)

                                                                                                                       atcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  >  2:320878‑M1/17‑140 (MQ=255)

                                                                                                                        tcattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGtt                 >  1:576410‑M1/16‑140 (MQ=255)

                                                                                                                         tCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:1398530/140‑1 (MQ=255)

                                                                                                                         tCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:137639/140‑1 (MQ=255)

                                                                                                                         tCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:1439396/140‑1 (MQ=255)

                                                                                                                         tCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:460226/140‑1 (MQ=255)

                                                                                                                         tCACGGATAGTA‑CAGTTAAATGCCAAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:1223343/140‑1 (MQ=255)

                                                                                                                         cattgttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:298569‑M1/15‑140 (MQ=255)

                                                                                                                           aCTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:1295930/138‑1 (MQ=255)

                                                                                                                           aCTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  1:1418173/1‑140 (MQ=255)

                                                                                                                           aCTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  1:1086381/1‑140 (MQ=255)

                                                                                                                            cTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             <  2:492869/140‑1 (MQ=255)

                                                                                                                             gttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc            >  1:28556‑M1/11‑140 (MQ=255)

                                                                                                                              ttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:475155‑M1/10‑135 (MQ=255)

                                                                                                                              ttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  2:610321‑M1/10‑140 (MQ=255)

                                                                                                                              ttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  1:1102635‑M1/131‑1 (MQ=255)

                                                                                                                              ttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  2:1326373‑M1/10‑140 (MQ=255)

                                                                                                                              ttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  1:454147‑M1/10‑140 (MQ=255)

                                                                                                                              ttatatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  1:594135‑M1/10‑140 (MQ=255)

                                                                                                                              gATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGGCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCCGTTACGACt           <  1:1234856/140‑1 (MQ=255)

                                                                                                                               aTAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:975330/1‑134 (MQ=255)

                                                                                                                               aTAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:975330/134‑1 (MQ=255)

                                                                                                                                atatctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtat         <  1:628811‑M1/133‑1 (MQ=255)

                                                                                                                                  atctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatat       <  1:781182‑M1/135‑1 (MQ=255)

                                                                                                                                   tctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      >  2:356644‑M1/5‑140 (MQ=255)

                                                                                                                                   tctaAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      >  2:1133408‑M1/5‑140 (MQ=255)

                                                                                                                                   tATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:1303966/1‑130 (MQ=255)

                                                                                                                                   tATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      <  1:381970/140‑1 (MQ=255)

                                                                                                                                      aAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTg   <  2:1376105‑M1/139‑1 (MQ=255)

                                                                                                                                       AG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  1:109149‑M1/131‑1 (MQ=255)

                                                                                                                                       AG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  2:109149‑M1/1‑131 (MQ=255)

                                                                                                                                       AG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  <  1:1458218‑M1/140‑1 (MQ=255)

TGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAG‑TAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362866‑3363140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.