BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,884,028	G→T	M1M (ATG→ATT) †	ysdD →	protein YsdD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,884,028	0	G	T	100.0%	387.8 / NA	110	M1M (ATG→ATT) †	ysdD	protein YsdD
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (54/56); total (54/56)

Only 100 of 112 total aligned reads displayed.

GCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATGACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCC  >  NC_000913/3883892‑3884161

gCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGAATTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTAcc                                                                                                                                    <  2:428973/140‑1 (MQ=255)

  cTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCAt                                                                                                                                  >  1:539490/1‑140 (MQ=255)

    aaaCTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAg                                                                                                                                >  1:1123250/1‑140 (MQ=255)

    aaaCTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAg                                                                                                                                >  1:787266/1‑140 (MQ=255)

     aaCTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGTACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGa                                                                                                                               >  2:301668/1‑140 (MQ=255)

      aCTGCGCAAGAGATCTTCTGTTTCTCCCAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGAc                                                                                                                              >  1:413362/1‑140 (MQ=255)

      aCTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGAc                                                                                                                              <  1:394814/140‑1 (MQ=255)

      aCTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGAc                                                                                                                              >  2:1157254/1‑140 (MQ=255)

      aCTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCACCAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTTCCATAGAc                                                                                                                              <  2:821251/140‑1 (MQ=255)

         gcgcAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACaaa                                                                                                                           >  2:859736/1‑140 (MQ=255)

          cgcAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACaaaa                                                                                                                          >  2:966997/1‑140 (MQ=255)

          cgcAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACaaaa                                                                                                                          >  1:487449/1‑140 (MQ=255)

          cgcAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACaaaa                                                                                                                          >  1:194224/1‑140 (MQ=255)

          cgcAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACaaaa                                                                                                                          >  1:759592/1‑140 (MQ=255)

          cgcAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACaaaa                                                                                                                          >  1:946461/1‑140 (MQ=255)

          cgcAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACaaaa                                                                                                                          >  2:446566/1‑140 (MQ=255)

          cgcAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACaaaa                                                                                                                          >  2:549078/1‑140 (MQ=255)

          cgcAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACaaaa                                                                                                                          >  2:964744/1‑140 (MQ=255)

           gcAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGTACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACaaaaa                                                                                                                         <  1:301668/140‑1 (MQ=255)

           gcAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACaaaaa                                                                                                                         >  2:1226038/1‑140 (MQ=255)

           gcAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACaaaaa                                                                                                                         >  2:1436538/1‑140 (MQ=255)

           gcAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACaaaaa                                                                                                                         >  1:1413061/1‑140 (MQ=255)

           gcAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACaaaaa                                                                                                                         <  1:822949/140‑1 (MQ=255)

           gcAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACaaaaa                                                                                                                         <  2:800546/140‑1 (MQ=255)

           gcAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACaaaaa                                                                                                                         >  1:1139581/1‑140 (MQ=255)

                    cttctGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTaa                                                                                                                >  1:18129/1‑140 (MQ=255)

                    cttctGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTaa                                                                                                                <  2:946461/140‑1 (MQ=255)

                     ttctGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAAt                                                                                                               <  2:312103/140‑1 (MQ=255)

                     ttctGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAAt                                                                                                               <  1:919418/140‑1 (MQ=255)

                       ctGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCg                                                                                                             >  1:456296/1‑140 (MQ=255)

                         gTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGAt                                                                                                           <  2:362901/140‑1 (MQ=255)

                         gTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGAt                                                                                                           <  1:1206626/140‑1 (MQ=255)

                         gTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGAt                                                                                                           >  1:1142499/1‑140 (MQ=255)

                          tttCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATc                                                                                                          >  2:639396/1‑140 (MQ=255)

                             ctcACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGTACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAAt                                                                                                               >  1:1282460/1‑132 (MQ=255)

                             ctcACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGTACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAAt                                                                                                               <  2:1282460/132‑1 (MQ=255)

                             ctcACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCtaa                                                                                                       <  2:844728/140‑1 (MQ=255)

                             ctcACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCtaa                                                                                                       >  1:1328473/1‑140 (MQ=255)

                                acaGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCtaataa                                                                                                    <  2:18129/140‑1 (MQ=255)

                                acaGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCtaataa                                                                                                    <  1:549078/140‑1 (MQ=255)

                                acaGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCtaataa                                                                                                    <  2:1269577/140‑1 (MQ=255)

                                acaGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCtaataa                                                                                                    <  2:201813/140‑1 (MQ=255)

                                 caGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATaaa                                                                                                   >  2:195343/1‑140 (MQ=255)

                                    aTTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGAt                                                                                                <  2:240560/140‑1 (MQ=255)

                                     ttttCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATc                                                                                               <  1:725667/140‑1 (MQ=255)

                                            caattATCCAAAGGGCTTTCCAAAACTCGCTAAATGTAAAAGATCCTGCCCCGAAGCGGGCAAGATTTACCCCGCATATTGGAAAAATTAATTACCATAGACAAAAAATTGCTTAAACCAACTAATAAAGATCCAGGACg                                                                                        <  2:413362/137‑1 (MQ=255)

                                              tttATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCtaataa                                                                                                    <  1:136348/126‑1 (MQ=255)

                                              tttATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCtaataa                                                                                                    >  2:136348/1‑126 (MQ=255)

                                                tATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATcc                                                                                    <  1:243597/140‑1 (MQ=255)

                                                     acaGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTgcg                                                                               <  1:175065/140‑1 (MQ=255)

                                                            tttCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTAcc                                                                        >  1:338261/1‑140 (MQ=255)

                                                            tttCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTAcc                                                                        >  1:1118816/1‑140 (MQ=255)

                                                              tCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCCTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCa                                                                      >  2:440458/1‑140 (MQ=255)

                                                                cAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATc                                                                    <  1:846857/140‑1 (MQ=255)

                                                                cAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATc                                                                    <  1:195343/140‑1 (MQ=255)

                                                                   aaCTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTa                                                                          <  1:703667/131‑1 (MQ=255)

                                                                   aaCTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTa                                                                          >  2:703667/1‑131 (MQ=255)

                                                                   aaCTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGc                                                                 <  2:1328473/140‑1 (MQ=255)

                                                                   aaCTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGAGCCTTGCGCTTTACCCATCAGc                                                                 <  2:235660/140‑1 (MQ=255)

                                                                     cTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGccc                                                               <  2:374176/140‑1 (MQ=255)

                                                                        gCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGta                                                            >  1:930369/1‑140 (MQ=255)

                                                                        gCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGta                                                            <  2:1123250/140‑1 (MQ=255)

                                                                                  aaCGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCa                                                  >  1:559246/1‑140 (MQ=255)

                                                                                      aTCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCg                                              >  1:146407/1‑140 (MQ=255)

                                                                                      aTCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCg                                              >  1:1183216/1‑140 (MQ=255)

                                                                                      aTCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCg                                              >  1:567628/1‑140 (MQ=255)

                                                                                        ccTGCCGCGGGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGgc                                            >  1:1082917/1‑140 (MQ=255)

                                                                                        ccTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATTAGCCCGTATAATCCTCCACCCGgc                                            >  1:1267809/1‑140 (MQ=255)

                                                                                        ccTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGgc                                            >  2:624189/1‑140 (MQ=255)

                                                                                         cTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGgcg                                           <  1:1118314/140‑1 (MQ=255)

                                                                                           gCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGgcgcg                                         <  1:620648/140‑1 (MQ=255)

                                                                                            ccGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTCGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGgcgcgc                                        <  2:225425/140‑1 (MQ=255)

                                                                                                gAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATg                                    <  2:504678/140‑1 (MQ=255)

                                                                                                gAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATg                                    <  1:1002091/140‑1 (MQ=255)

                                                                                                 aGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATg                                    <  2:1362000/139‑1 (MQ=255)

                                                                                                 aGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATg                                    >  1:1362000/1‑139 (MQ=255)

                                                                                                 aGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGc                                   >  2:1179136/1‑140 (MQ=255)

                                                                                                 aGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGc                                   >  1:1282751/1‑140 (MQ=255)

                                                                                                 aGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGc                                   >  2:314881/1‑140 (MQ=255)

                                                                                                 aGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCAACCGGCGCGCCATGc                                   >  1:50214/1‑140 (MQ=255)

                                                                                                     gggCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGt                               <  1:123547/140‑1 (MQ=255)

                                                                                                      ggCACGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGtt                              >  2:86064/1‑140 (MQ=255)

                                                                                                          cGATTTACGCCGCATATTGGAAAATTTAATTACCATATACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCa                          <  2:50214/140‑1 (MQ=255)

                                                                                                          cGATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCa                          <  2:1139581/140‑1 (MQ=255)

                                                                                                           gATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCAc                         <  1:446566/140‑1 (MQ=255)

                                                                                                           gATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCAc                         <  1:1436538/140‑1 (MQ=255)

                                                                                                           gATTTACGCCGCATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCAc                         <  1:314881/140‑1 (MQ=255)

                                                                                                                     gcATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTg                                 >  2:150495/1‑122 (MQ=255)

                                                                                                                     gcATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTg                                 <  1:699137/122‑1 (MQ=255)

                                                                                                                     gcATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTg                                 >  2:699137/1‑122 (MQ=255)

                                                                                                                     gcATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTg                                 <  1:150495/122‑1 (MQ=255)

                                                                                                                     gcATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAgg               >  1:1247007/1‑140 (MQ=255)

                                                                                                                     gcATATTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAgg               >  2:1083257/1‑140 (MQ=255)

                                                                                                                        tatTGGAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCg            <  2:1309644/140‑1 (MQ=255)

                                                                                                                        tatTGGAAAATTTAATTACAATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCAc                         <  1:728197/127‑1 (MQ=255)

                                                                                                                        tatTGGAAAATTTAATTACAATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCAc                         >  2:728197/1‑127 (MQ=255)

                                                                                                                            ggAAAATTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACa        >  1:312098/1‑140 (MQ=255)

                                                                                                                                aaTTTAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACAtttt    <  2:1134664/140‑1 (MQ=255)

                                                                                                                                  tttAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTcc  >  1:574279/1‑140 (MQ=255)

                                                                                                                                  tttAATTACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTcc  >  2:1259341/1‑140 (MQ=255)

GCCTAAACTGCGCAAGAGATCTTCTGTTTCTCACAGATTTTCCCGATTTATCCACAGGACTTTCCAGAACTCGCTAAGTGTAAACGATCCTGCCGCGAGGCGGGCACGATTTACGCCGCATATTGGAAAATTTAATGACCATAGACAAAAATTGGCTTAATCGATCTAATAAAGATCCAGGACGATCCTTGCGCTTTACCCATCAGCCCGTATAATCCTCCACCCGGCGCGCCATGCTGGTTTCCACTGGTGTGAGGTCGTACATTTTCC  >  NC_000913/3883892‑3884161

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`