New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3363001 =148 (1.540)151 (1.590) 79/274 0.0 67.0% coding (195/2382 nt) yhcD putative fimbrial usher protein YhcD
?NC_000913 3766087 = 2 (0.020)coding (3905/4134 nt) rhsA rhs element protein RhsA

Only 100 of 158 total aligned reads displayed.

ACAATATATAGTCGTAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3363140‑3363001
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGACAGATGTGACGTACTTCAGGAACTAATTGA  >  NC_000913/3766087‑3766225
                                                                                                                                                                                                                                                                                         
ACAATATATAGTCGTAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACT                                                                                                                                             <  1:657116/140‑1
ACAATATATAGTCGTAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACT                                                                                                                                             >  1:662417/1‑140
 CAATATATAGTCGTAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTT                                                                                                                                            <  1:28321/140‑1
 CAATATATAGTCGTAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTT                                                                                                                                            <  1:742739/140‑1
 CAATATATAGTCGTAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTT                                                                                                                                            <  1:1371603/140‑1
    TATATAGTCGTAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGA                                                                                                                                         >  1:465081/1‑140
    TATATAGTCGTAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGA                                                                                                                                         >  2:179414/1‑140
     ATATAGTCGTAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGAT                                                                                                                                        <  2:716721/140‑1
     ATATAGTCGTAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGAT                                                                                                                                        >  2:320589/1‑140
         AGTCGTAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAA                                                                                                                                    >  2:1045428/1‑140
         AGTCGTAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAA                                                                                                                                    >  1:1577481/1‑140
         AGTCGTAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAA                                                                                                                                    >  1:85588/1‑140
          GTCGTAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAAC                                                                                                                                   >  2:501831/1‑140
          GTCGTAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAAC                                                                                                                                   >  2:1521195/1‑140
          GTCGTAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAAC                                                                                                                                   >  1:1411249/1‑140
           TCGTAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACA                                                                                                                                  >  1:19146/1‑140
            CGTAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAA                                                                                                                                 >  2:690691/1‑140
            CGTAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAA                                                                                                                                 >  1:276169/1‑140
              TAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATG                                                                                                                               >  1:403097/1‑140
              TAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATG                                                                                                                               >  2:587545/1‑140
              TAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATG                                                                                                                               >  1:33267/1‑140
              TAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATG                                                                                                                               >  1:302281/1‑140
              TAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACT                                                                                                                                             >  1:771217/1‑126
               AACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGA                                                                                                                              >  1:932408/1‑140
                ACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGAT                                                                                                                             >  1:901132/1‑140
                ACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGAT                                                                                                                             >  2:1494064/1‑140
                ACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGAT                                                                                                                             >  2:1589121/1‑140
                ACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGAT                                                                                                                             >  1:1034413/1‑140
                ACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGA                                                                                                                                         >  2:894616/1‑128
                ACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAAACGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGAT                                                                                                                             >  2:1331119/1‑140
                     CATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTT                                                                                                                        >  1:1118735/1‑140
                      ATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTC                                                                                                                       <  2:314340/140‑1
                              CTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAA                                                                                                               >  1:24345/1‑140
                                    AAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTG                                                                                                         >  2:1181632/1‑140
                                    AAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTG                                                                                                         >  2:1093219/1‑140
                                     AGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGC                                                                                                        <  2:766862/140‑1
                                      GGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCA                                                                                                       <  2:1554707/140‑1
                                         ATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGAC                                                                                                    <  1:1098530/140‑1
                                         ATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGAC                                                                                                    <  1:304296/140‑1
                                          TTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACA                                                                                                   <  1:587545/140‑1
                                          TTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACA                                                                                                   <  1:1498275/140‑1
                                           TTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACAC                                                                                                  <  1:182545/140‑1
                                           TTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACAC                                                                                                  <  1:768122/140‑1
                                           TTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACAC                                                                                                  <  1:1494064/140‑1
                                           TTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACAC                                                                                                  <  1:1012284/140‑1
                                           TTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACAC                                                                                                  <  2:133901/140‑1
                                           TTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACAC                                                                                                  <  2:1434890/140‑1
                                            TTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACA                                                                                                 <  2:1469117/140‑1
                                             TTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAG                                                                                                <  2:1144230/140‑1
                                              TAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGG                                                                                               <  1:1589121/140‑1
                                               AAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCATTGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGG                                                                                              <  2:1000934/140‑1
                                               AAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGG                                                                                              <  2:1592394/140‑1
                                                         GTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACGATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATC                                                                                    <  2:1223428/140‑1
                                                         GTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATC                                                                                    <  1:839952/140‑1
                                                         GTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATC                                                                                    <  1:10884/140‑1
                                                         GTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATC                                                                                    <  2:1120447/140‑1
                                                         GTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATC                                                                                    <  2:760310/140‑1
                                                          TTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCATAGCAATGTTGCC‑TCTTTTCTTCGCCATTTTCTTAGATATATCAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATC                                                                                    <  2:996354/140‑1
                                                              AGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATAAAAGCGCGTAGCAATGTTGCC‑T‑TTGTTTTCGCCATTTACTTAGATATAGCAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTC                                                                               <  1:864478/140‑1
                                                                AAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAA                                                                             <  1:120342/140‑1
                                                                AAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAA                                                                             <  2:559074/140‑1
                                                                 AATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAAT                                                                            <  1:114475/140‑1
                                                                       TGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATA                                                                      <  1:478711/140‑1
                                                                       TGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATA                                                                      >  1:74735/1‑140
                                                                         ATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAAT                                                                    <  1:1342273/140‑1
                                                                          TCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATA                                                                   >  1:357471/1‑140
                                                                          TCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACA                                                                        <  2:420781/135‑1
                                                                          TCAAGACAAATGTCGCCATTTTCATCAAAGAGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATA                                                                   >  2:1185695/1‑140
                                                                           CAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAA                                                                  <  2:1346974/140‑1
                                                                              GACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATG                                                               >  2:1097072/1‑140
                                                                                CAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGAC                                                             <  2:302281/140‑1
                                                                                CAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGAC                                                             <  1:1520678/140‑1
                                                                                 AAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACA                                                            <  2:90571/140‑1
                                                                                   ATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGA                                                          <  2:1212084/140‑1
                                                                                   ATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGA                                                          >  2:186252/1‑140
                                                                                        GCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGTAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTG                                                     >  1:1421325/1‑140
                                                                                        GCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTG                                                     >  1:504316/1‑140
                                                                                           ATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAG                                                  <  1:1307534/140‑1
                                                                                               TCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGAT                                              <  1:1093219/140‑1
                                                                                                CATCAAAGCGCGTAGCAATGTTGCCTT‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGAT                                              >  1:1466166/1‑140
                                                                                                      AGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAA                                       >  1:1036763/1‑140
                                                                                                             AGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGA                                <  1:1015011/140‑1
                                                                                                              GCAATGTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGAC                               <  1:690691/140‑1
                                                                                                                   GTTGCCTT‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGACAGAT                           <  1:1510813/140‑1
                                                                                                                   GTTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGACAGATG                          <  1:1128573/140‑1
                                                                                                                    TTGCC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGACAGATGT                         >  2:514626/1‑140
                                                                                                                       CC‑T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGACAGATGTGAC                      >  2:947019/1‑140
                                                                                                                          T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGACAGATGTGACGT                    >  1:984340/1‑140
                                                                                                                          T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGACAGATGTGACG                     <  1:52239/139‑1
                                                                                                                          T‑TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGACAGATG                          <  2:1400384/134‑1
                                                                                                                            TTTTTTTCGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGACAGATGTGACGTA                   <  2:355052/140‑1
                                                                                                                                 TTCGCCATTTACTTAGATATAACAATGATAACTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGACAGATGTGACGTACTTCA              <  1:1185695/140‑1
                                                                                                                                   CGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGACAGATGTGACGTACTTCAGG            <  2:901132/140‑1
                                                                                                                                   CGCCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGACAGATGTGACGTACTTCAGG            <  2:1466166/140‑1
                                                                                                                                     CCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGACAGATGTGACGTACTTCAGGAA          >  1:729618/1‑140
                                                                                                                                     CCATTTACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGACAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGACAGATGTGACGTACTTCAGGAA          <  1:1145002/140‑1
                                                                                                                                          TACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGACAGATGTGACGTACTTCAGGAACTAAT     <  2:504316/140‑1
                                                                                                                                           ACTTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGACAGATGTGACGTACTTCAGGAACTAATT    <  2:853143/140‑1
                                                                                                                                             TTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGACAGATGTGACGTACTTCAGGAACTAATTGA  <  1:538737/140‑1
                                                                                                                                             TTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGACAGATGTGACGTACTTCAGGAACTAATTGA  <  2:1215272/140‑1
                                                                                                                                                                                                                                                                                         
ACAATATATAGTCGTAACAGCCATTTTTTTCTTCAGAAGGAATTTTTAAACCGGCTTGTTGCAGAAATGCCTGATCAAGACAAATGTCGCCATTTTCATCAAAGCGCGTAGCAATGTTGCC‑T‑TTTTTTTCGCCATTTACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3363140‑3363001
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTAGATATAACAATGATAGCTTCTCGTGGAAATGTTGCAGACACAGGGATAACTGATCGTGTCAATGACATAATAAATGACAGATTCTGGAGTGATGGGAAAAAACCCGACAGATGTGACGTACTTCAGGAACTAATTGA  >  NC_000913/3766087‑3766225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.