BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3653230	NA (NA)	95 (0.990)	52/276	0.4	96.0%	noncoding (1/1195 nt)	IS5	repeat region
*	?	NC_000913	= 3766089	4 (0.040)	95 (0.990)	52/276	0.4	96.0%	coding (3907/4134 nt)	rhsA	rhs element protein RhsA

Only 100 of 101 total aligned reads displayed.

TTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGCG  >  NC_000913/3653101‑3653368

tttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGaca                                                                                                                                    >  2:358575/1‑140 (MQ=32)

      gTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑ttt                                                                                                                            >  2:895489/1‑140 (MQ=37)

      gTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑ttt                                                                                                                            >  1:1597241/1‑140 (MQ=37)

        cTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑ttttt                                                                                                                          <  1:1246863/140‑1 (MQ=39)

         tGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGTGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑tttttt                                                                                                                         >  1:397854/1‑140 (MQ=255)

          gACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑ttttttt                                                                                                                        <  2:667828/140‑1 (MQ=255)

           aCGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTa                                                                                                                       >  2:990834/1‑140 (MQ=255)

           aCGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTa                                                                                                                       >  2:1208391/1‑140 (MQ=255)

              gcgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACAt                                                                                                                    <  1:358575/140‑1 (MQ=255)

              gcgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACAt                                                                                                                    <  2:869426/140‑1 (MQ=255)

               cgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATa                                                                                                                   <  1:1437836/140‑1 (MQ=255)

                  ttACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAg                                                                                                                <  2:853844/140‑1 (MQ=255)

                    aCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGaa                                                                                                              <  2:113693/140‑1 (MQ=255)

                    aCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGaa                                                                                                              <  1:467036/140‑1 (MQ=255)

                    aCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGaa                                                                                                              <  1:1239346/140‑1 (MQ=255)

                    aCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGaa                                                                                                              <  1:791876/140‑1 (MQ=255)

                    aCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGaa                                                                                                              <  2:215268/140‑1 (MQ=255)

                    aCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGaa                                                                                                              <  2:1108950/140‑1 (MQ=255)

                     ctgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAac                                                                                                             <  2:265987/140‑1 (MQ=255)

                     ctgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAac                                                                                                             >  2:1352270/1‑140 (MQ=255)

                        ctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACAcc                                                                                                          <  1:89508/140‑1 (MQ=255)

                          gAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCt                                                                                                        >  1:352811/1‑140 (MQ=255)

                             ttCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTAcc                                                                                                     >  1:783115/1‑140 (MQ=255)

                              tCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTAccc                                                                                                    <  2:1269864/140‑1 (MQ=255)

                              tCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTAccc                                                                                                    <  2:537034/140‑1 (MQ=255)

                                aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTAccccc                                                                                                  <  1:390637/140‑1 (MQ=255)

                                aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTAccccc                                                                                                  >  2:359870/1‑140 (MQ=255)

                                   gTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCaaa                                                                                               <  1:380460/140‑1 (MQ=255)

                                   gTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCaaa                                                                                               <  2:838592/140‑1 (MQ=255)

                                   gTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCaaa                                                                                               <  1:898025/140‑1 (MQ=255)

                                     cGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAAtt                                                                                             >  2:361259/1‑140 (MQ=255)

                                            ggTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATaaa                                                                                      >  2:770593/1‑140 (MQ=255)

                                              tAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGa                                                                                    <  2:1597241/140‑1 (MQ=255)

                                              tAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGa                                                                                    <  2:575513/140‑1 (MQ=255)

                                              tAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGa                                                                                    >  2:258573/1‑140 (MQ=255)

                                                  ttGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGa                                                                                <  2:647257/140‑1 (MQ=255)

                                                   tgatgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGAc                                                                               <  2:1034055/140‑1 (MQ=255)

                                                   tgatgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGAc                                                                               <  1:359870/140‑1 (MQ=255)

                                                    gatgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACa                                                                              <  2:238957/140‑1 (MQ=255)

                                                               atgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGaca                                                                   <  1:258573/140‑1 (MQ=255)

                                                               atgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGaca                                                                   <  1:1436362/140‑1 (MQ=255)

                                                                      cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCTCAAATTATATAAAGATGGACAATATCTTGACAAACAAAt                                                            >  2:787171/1‑140 (MQ=255)

                                                                       tGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATc                                                           <  1:261753/140‑1 (MQ=255)

                                                                       tGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATc                                                           >  1:1598898/1‑140 (MQ=255)

                                                                        gTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCg                                                          >  1:338169/1‑140 (MQ=255)

                                                                        gTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCg                                                          >  2:454562/1‑140 (MQ=255)

                                                                          tCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGaa                                                        <  1:466575/140‑1 (MQ=255)

                                                                             aTGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGt                                                     <  1:951880/140‑1 (MQ=255)

                                                                              tGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGtt                                                    >  2:2930/1‑140 (MQ=255)

                                                                              tGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGtt                                                    >  2:395992/1‑140 (MQ=255)

                                                                                gCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTa                                                  <  2:1305606/140‑1 (MQ=255)

                                                                                 cTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTAt                                                 >  2:748769/1‑140 (MQ=255)

                                                                                 cTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTAt                                                 >  2:1541823/1‑140 (MQ=255)

                                                                                  tCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTAtt                                                <  1:395992/140‑1 (MQ=255)

                                                                                   ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGacaaa                                                                 >  2:1073877/1‑122 (MQ=255)

                                                                                   ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGacaaa                                                                 <  1:1073877/122‑1 (MQ=255)

                                                                                   ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTAttt                                               >  2:576984/1‑140 (MQ=255)

                                                                                   ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTAttt                                               >  1:282088/1‑140 (MQ=255)

                                                                                   ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑CTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTAttt                                               >  2:161075/1‑140 (MQ=255)

                                                                                      gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCa                                            <  2:13825/140‑1 (MQ=255)

                                                                                       aTGACAAACATGATCTCATATCAGGGACTTGTTCGCGCCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCaa                                           <  2:365667/140‑1 (MQ=255)

                                                                                       aTGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCaa                                           <  1:361259/140‑1 (MQ=255)

                                                                                       aTGACAAACATGATCTCATATCAGGGACTTGTTCACACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCaa                                           <  2:48761/140‑1 (MQ=255)

                                                                                         gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACa                                         <  1:770593/140‑1 (MQ=255)

                                                                                           cAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACatt                                       >  2:708258/1‑140 (MQ=255)

                                                                                                aTGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTaa                                  <  2:224184/140‑1 (MQ=255)

                                                                                                aTGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTaa                                  <  1:720342/140‑1 (MQ=255)

                                                                                                aTGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTaa                                  <  1:895489/140‑1 (MQ=255)

                                                                                                aTGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTaa                                  <  1:886244/140‑1 (MQ=255)

                                                                                                aTGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑CTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTaa                                  <  1:161075/140‑1 (MQ=255)

                                                                                                 tGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAAc                                 >  1:1078817/1‑140 (MQ=255)

                                                                                                   aTCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCa                               >  1:238823/1‑140 (MQ=255)

                                                                                                    tctcATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCAt                              <  2:783115/140‑1 (MQ=255)

                                                                                                    tctcATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCAt                              >  2:965405/1‑140 (MQ=255)

                                                                                                        atatCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACAttatta                                   >  1:1421639/1‑131 (MQ=255)

                                                                                                        atatCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACAttatta                                   <  2:1421639/131‑1 (MQ=255)

                                                                                                        atatCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAAt                          <  2:592088/140‑1 (MQ=255)

                                                                                                         tatCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATg                         <  1:965405/140‑1 (MQ=255)

                                                                                                          atCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGa                        <  1:235039/140‑1 (MQ=255)

                                                                                                           tCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGAc                       <  2:882789/140‑1 (MQ=255)

                                                                                                              gggACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAAc                    >  2:1556370/1‑140 (MQ=255)

                                                                                                               ggACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAAcc                   <  1:1311093/140‑1 (MQ=255)

                                                                                                               ggACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAAcc                   >  1:388374/1‑140 (MQ=255)

                                                                                                               ggACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAAcc                   >  2:1435911/1‑140 (MQ=255)

                                                                                                               ggACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAAcc                   >  1:963527/1‑140 (MQ=255)

                                                                                                               ggACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAAcc                   >  2:264634/1‑140 (MQ=255)

                                                                                                                  cTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCt                  >  1:1316701/1‑140 (MQ=255)

                                                                                                                  cTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCttt                >  1:940241/1‑140 (MQ=255)

                                                                                                                  cTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCttt                >  1:795421/1‑140 (MQ=255)

                                                                                                                    tGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTa              <  1:264634/140‑1 (MQ=255)

                                                                                                                    tGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTa              >  1:1291057/1‑140 (MQ=255)

                                                                                                                      ttCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGTTGGACAATATTTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACg            >  2:654835/1‑140 (MQ=255)

                                                                                                                      ttCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGAc                       <  1:911884/129‑1 (MQ=255)

                                                                                                                      ttCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGAc                       >  2:911884/1‑129 (MQ=255)

                                                                                                                      ttCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACg            >  1:541969/1‑140 (MQ=255)

                                                                                                                           aCCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCaa       >  1:412136/1‑140 (MQ=255)

                                                                                                                               tccttAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGc   >  1:164634/1‑140 (MQ=255)

                                                                                                                               tccttAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGc   >  2:60549/1‑140 (MQ=255)

                                                                                                                               tccttAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGc   >  2:1055448/1‑140 (MQ=255)

                                                                                                                                ccttAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGCg  >  2:443169/1‑140 (MQ=255)

TTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGCG  >  NC_000913/3653101‑3653368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.