| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,429,984 | 0 | T | G | 36.0% | 101.4 / 36.1 | 75 | L41V (TTG→GTG) | cycA | serine/alanine/glycine/cycloserine:H(+)symporter |
| Reads supporting (aligned to +/- strand): ref base T (7/41); new base G (27/0); total (34/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.93e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAAT > NC_000913/4429845‑4430119 | ggTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGgt < 2:647253/140‑1 (MQ=255)ggTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGgt < 2:342994/140‑1 (MQ=255)ggTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGgt < 1:314658/140‑1 (MQ=255)ggTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCAGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGgt < 1:830326/140‑1 (MQ=255)ggTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTACCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGgt < 2:173389/140‑1 (MQ=255) gTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGgtt < 1:663277/140‑1 (MQ=255) aCAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGGACGGGggtgt > 1:303414/1‑140 (MQ=255) cAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGggtgtt > 2:838341/1‑140 (MQ=255) aGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGttt > 1:897418/1‑140 (MQ=255) aGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGGG‑CCATTGGTACGGGGGTGttt > 2:640728/1‑140 (MQ=255) gaagaaAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCCTTTGGACGGGGGTGTTTAt > 1:100729/1‑140 (MQ=255) aagaaAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑g < 1:1416276/140‑1 (MQ=255) agaaAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑gg > 1:1136364/1‑140 (MQ=255) agaaAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGGACGGGGGTGTTTTT‑gg > 1:1148438/1‑140 (MQ=255) aaaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑GCATTGGTAAGGGGGTGTTTTT‑gggg > 1:1519707/1‑140 (MQ=255) aaaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCCTTGGTACGGGGGTGTTTAT‑gggg > 1:1083469/1‑140 (MQ=255) aaaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑gggg < 1:1176174/140‑1 (MQ=255) aaaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTTT‑gggg > 2:1229108/1‑140 (MQ=255) aaaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTAT‑gggg > 1:547745/1‑140 (MQ=255) aaaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTAT‑gggg > 1:1348344/1‑140 (MQ=255) aaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGt < 2:253553/140‑1 (MQ=255) aaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTTT‑ggggg > 1:1230772/1‑139 (MQ=255) aaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTAT‑ggggg > 1:708695/1‑139 (MQ=255) gtGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCaa < 1:1232185/139‑1 (MQ=255) aTGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTGGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCaa < 2:1352932/140‑1 (MQ=255) aTGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCaa < 1:1259934/140‑1 (MQ=255) ggTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCCTTGGTACGGGGGTGTTTTT‑GGGGGCTGGCaaaa > 2:1535693/1‑140 (MQ=255) ggTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCaaaa > 1:133823/1‑140 (MQ=255) gATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGTCCCTTGGAGCGGGGTTTTTTTT‑GGGG‑CTGGCaaaaacat > 2:1546517/1‑136 (MQ=255) aTCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTAT‑GGGGTCTGGCAAAACGAtt > 1:619353/1‑140 (MQ=255) cAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAg > 2:1199901/1‑140 (MQ=255) cAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTTT‑GGGGTCTTGCAAAAAGATTAg > 2:793532/1‑140 (MQ=255) cAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTAT‑GGGGTCTGGCAAAACGATTAg > 1:413411/1‑140 (MQ=255) gTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCCATTGTAAGGGGGTGTTTTT‑GGGGGCTGGCAAAACGATTAGccc > 2:1232185/1‑139 (MQ=255) tCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCggg < 1:1199901/140‑1 (MQ=255) ttGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCGTTCGGACGGGGGTGTTTAT‑GGGGGCTGGCCAAAAGATTAACCTTGGCGGGCCg > 2:784664/1‑140 (MQ=255) ttGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGGCTGGCAAAACGATTAGCCTTGCCGGGCCg > 1:1258092/1‑140 (MQ=255) cGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGa < 2:1348344/140‑1 (MQ=255) gatgatCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGAt < 2:1267297/140‑1 (MQ=255) atgatCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATc > 1:595047/1‑140 (MQ=255) atCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCAtt < 1:1459634/140‑1 (MQ=255) cAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCAtttt < 2:413411/140‑1 (MQ=255) cAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCAtttt < 2:901068/140‑1 (MQ=255) gggCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTATGGGGGTCTGACAAAACGATTAGCCTTGCCGGGCCGTCGATCAtttt < 1:102598/139‑1 (MQ=255) ggCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCg < 2:1044228/140‑1 (MQ=255) ggCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGGCGTCGATCATTTTct > 1:1477386/1‑139 (MQ=255) gCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGt < 2:946085/140‑1 (MQ=255) gCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGt < 2:35185/140‑1 (MQ=255) cTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGtt < 1:1534011/140‑1 (MQ=255) tCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTTT‑GGGGGCTGGCCAAAAGATTAGCCTTTTCGGGGCGTCGCTCCttttttttt > 2:1207690/1‑135 (MQ=255) cGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTtat < 1:149657/140‑1 (MQ=255) cGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTtat < 1:1592287/140‑1 (MQ=255) ggCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTtata < 2:545784/140‑1 (MQ=255) ggCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTtata < 2:133823/140‑1 (MQ=255) gCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTatat > 1:39507/1‑140 (MQ=255) gCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTatat > 1:1095272/1‑140 (MQ=255) gCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTAT‑GGGGTCTGGCAAAAAGATTAGCCTTTCCGGGGCGTCGATCATTTTTGTTTatat > 1:1578454/1‑140 (MQ=255) gAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGAt < 2:1113873/140‑1 (MQ=255) gAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGAt < 2:897418/140‑1 (MQ=255) aaCAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGGG‑GCCTTGGGACGGGGGGGTTTATGGGGGTCTTGCAAAACAACTAGGCTTCCCGGGCCGGCGATCAGTTTTGTTTatattac > 2:102598/1‑137 (MQ=255) cAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCAt < 1:1546517/140‑1 (MQ=255) cAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCAt < 2:512399/140‑1 (MQ=255) gTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTg < 1:792021/140‑1 (MQ=255) cgcAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGct < 1:1207690/140‑1 (MQ=255) gcAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCTGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGctc > 2:1565020/1‑140 (MQ=255) gcAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGctc < 2:990845/140‑1 (MQ=255) tctcACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTTT‑TGGGTCTGGCAAAACGATTAGCCTTTCCGGGGCGGCGATCATTTTCGTTTTTATGATCATTGGTTTTTTGCTCtttt > 2:333602/1‑140 (MQ=255) cacaAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCg < 1:967157/140‑1 (MQ=255) ccGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTTGTACGGGGTTGTTTTT‑TGGGGCTGGCAAAAAGATTAGCCTTGCCGGGGCGGCGATCATTTTTGTTTTTATGATCATTGGTTTTTTGCTCTTTTTTGTGATGc > 2:111714/1‑140 (MQ=255) cGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCg < 2:100729/140‑1 (MQ=255) cGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCg > 1:867045/1‑140 (MQ=255) cGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCg > 1:1219145/1‑140 (MQ=255) cGACATATTCAGCTTATTGCCATTGGCGGGG‑CCATTGGGACGGGGGTGTTTTT‑GGGGGCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCg > 2:471232/1‑140 (MQ=255) aCATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTAAGGGGGTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGGCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCggg > 1:1037414/1‑140 (MQ=255) cATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGc < 2:796107/140‑1 (MQ=255) atatTCAGCTTATTGCCATTGGCGGTG‑CCATTTGTACGGGGGTGTTTTT‑GGGGGCTGGCAAAACGATTAGCCTTTCCGGGGCGTCGGTCATTTTTGTTTTTATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCa > 2:576705/1‑140 (MQ=255) atatTCAGCTTATTGCCATTGGCGGTG‑CCATTGGGACGGGGGTGTTTAT‑GGGGGCTGGCAAAAAGATTAACCTTGCCGGGGCGTCGGTCATTTTTGTTTATATGATTATTGGTTTTATGGTCTTTTTTGTGATGCGGGCa > 2:1320351/1‑140 (MQ=255) atTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAAt < 2:1586289/140‑1 (MQ=255) tCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATgg > 1:288100/1‑140 (MQ=255) aGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTTT‑GGGGTCTGGCAAAACGATTAGCCTTTCCGGGGCGGCGATCATTTTCGTTTTTATGATCATTGGTTTTTTGCTCTTTTTTGTGATGCGGGCAATgggg > 2:439756/1‑140 (MQ=255) cTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATgggggg > 1:926557/1‑139 (MQ=255) ttGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATtg < 2:1116320/140‑1 (MQ=255) ttGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATtg < 2:39507/140‑1 (MQ=255) tGCCATTGGCGGTG‑CCATTGGTACGGGGGTGTTTAT‑GGGGGCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATtgc > 1:1329061/1‑140 (MQ=255) tGCCATTGGCGGTG‑CCATTGGGACGGGGGTGTTTTT‑GGGGGCTGGCAAAACGATTAGGCTTTCCGGGGCGTCGATCATTTTTGTTTTTATGATCATTGGGTTTTTGCTCTTTTTTGTGATGCGGGCAATGGGGGGATtgt > 2:744995/1‑139 (MQ=255) ttGGCGGTG‑GCATTGGTACGGGGGTGTTTTT‑GGGGTCTGGCAAAACGATTAGCCCTGCCGGGCCGTCGGTCATTTTTGTTTTTATGATTATTGGGTTTTTTCTCTTTTTTGTGATGCGGGGAATGGGGGGATTTCTGCtt > 2:347709/1‑140 (MQ=255) tGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCttt < 1:1210272/140‑1 (MQ=255) cGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGa < 1:1320351/140‑1 (MQ=255) tG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATc < 2:1519707/140‑1 (MQ=255) g‑CCATTGGTGCGGGGGTGTTTTT‑GGGGTCTGGCAAAAAGAATAGCCCTGCCGGGGCGTCGATCATTTTCGTTTTTATTATCATTGGTTTTTTGCTCTTTTTTGTGGTGCGGGCAATGGGGGAATTGCTGCTTTCGAATCt > 2:1606355/1‑140 (MQ=255) ccATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTg < 1:965662/140‑1 (MQ=255) ttGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGaa < 1:838341/140‑1 (MQ=255) aCGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGTCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACaa > 2:1350141/1‑140 (MQ=255) aCGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACaa < 2:1095557/140‑1 (MQ=255) cGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACaaa > 2:1223515/1‑140 (MQ=255) ggggTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAAt > 2:1617770/1‑140 (MQ=255) ggggTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAAt < 2:349862/140‑1 (MQ=255) | GGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTG‑CCATTGGTACGGGGTTGTTTAT‑GGGGTCTGGCAAAACGATTAGCCTTGCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTGATGCGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAAT > NC_000913/4429845‑4430119 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |