Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG31.4% 191.6 / 22.5 119T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (25/56);  new base G (37/0);  total (63/56)
Fisher's exact test for biased strand distribution p-value = 3.35e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 124 total aligned reads displayed.

GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAC  >  NC_000913/4568369‑4568643
                                                                                                                                       |                                                                                                                                             
gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaa                                                                                                                                           >  1:1288899/1‑140 (MQ=255)
gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaa                                                                                                                                           >  1:603854/1‑140 (MQ=255)
   ccAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaaaa                                                                                                                                        <  1:97386/140‑1 (MQ=255)
   ccAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaaaaa                                                                                                                                        >  1:262293/1‑140 (MQ=255)
    cAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaaaaa                                                                                                                                       >  2:386125/1‑139 (MQ=255)
       aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                    <  2:391169/140‑1 (MQ=255)
       aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTg                                                                                                                                    >  1:224913/1‑140 (MQ=255)
       aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAACAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                    <  2:701198/140‑1 (MQ=255)
          gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCa                                                                                                                                 <  2:897889/140‑1 (MQ=255)
           aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCAt                                                                                                                                >  1:871612/1‑140 (MQ=255)
           aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACTGGcca                                                                                                                                >  2:856430/1‑138 (MQ=255)
               cGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaaca                                                                                                                            <  1:1446132/140‑1 (MQ=255)
               cGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaaca                                                                                                                            <  1:374710/140‑1 (MQ=255)
               cGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaaca                                                                                                                            <  2:508410/140‑1 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaaa                                                                                                                          >  1:469622/1‑140 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaaa                                                                                                                          >  1:310889/1‑140 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATaacaaa                                                                                                                          >  1:1564449/1‑140 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATaaaaaa                                                                                                                          >  2:1287987/1‑140 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCATaaaaaa                                                                                                                          >  2:1271630/1‑140 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATaaaaaa                                                                                                                          >  2:265169/1‑140 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAAGGGATaacaaa                                                                                                                          >  2:885873/1‑140 (MQ=255)
                    ttAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAacaaacaa                                                                                                                       <  1:685403/140‑1 (MQ=255)
                       aaaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACCTGGCGAAAAAAAAAACTc                                                                                                                    >  2:321070/1‑140 (MQ=255)
                        aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                   <  2:1605940/140‑1 (MQ=255)
                            aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCa                                                                                                                                 <  1:1118573/122‑1 (MQ=255)
                            aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAAATCCtttt                                                                                                               >  2:685403/1‑138 (MQ=255)
                              gTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaac                                                                                                                             <  2:1030298/124‑1 (MQ=255)
                              gTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaac                                                                                                                             >  1:1030298/1‑124 (MQ=255)
                               tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACACAATCAACGCCATCGGGAAAAACAGCGTGGCAGCATGGCGGCCGAAAAAACGTCGCACAACAAACAAAACCGTGT‑ctc                                                                                                           >  2:1311377/1‑138 (MQ=255)
                                aCCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCgg                                                                                                          <  1:306275/140‑1 (MQ=255)
                                    caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAACAACACCTTGT‑CCGGAGaa                                                                                                      >  2:567072/1‑140 (MQ=255)
                                    caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAAAAAAAAACTCCTTGT‑CCGGAGaa                                                                                                      >  2:42033/1‑140 (MQ=255)
                                     aTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAAGGGATAAAAAAAAACACCTTTT‑CCGGGGaaa                                                                                                     >  2:746216/1‑139 (MQ=255)
                                          tGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCaa                                                                                               <  1:321070/140‑1 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCTGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAAAAACACCTTGT‑CCGGAGAA‑ACCCCACg                                                                                             >  2:1246293/1‑140 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACACCTTTT‑CCGGAGAA‑CCCCAACg                                                                                             >  2:1012330/1‑140 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAAAAAAACCTTTT‑CCGGAGAA‑ACCCCAcc                                                                                             >  2:1303917/1‑139 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAAAAAAAAAAACCTTGT‑CCGGGGGA‑CCCCCACg                                                                                             >  2:701657/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACggg                                                                                           <  2:1564449/140‑1 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGGATAAAAAAAAAACCCTTTT‑CCGGGGAA‑CCCCAACggg                                                                                           >  1:1027239/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAAAGGGAAAAAAAAAAAAACCTTGT‑GCAGAGAA‑CCCCCACagg                                                                                           >  2:684430/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGGATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACggg                                                                                           >  1:1078640/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATC‑GGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGCGGCATAAAAAACAACACCTTTT‑TCGGAGAA‑ACCCAACaggg                                                                                          >  2:214082/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACgggg                                                                                          >  1:151151/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAACAACTCCTTTT‑CCGGAGAA‑CCCCAACgggg                                                                                          >  1:417749/1‑140 (MQ=255)
                                                   gCTGGATCAGATCCGTCGACAGATACGTAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACAAGGCATAAAAAAAAACCACCCAT‑ACGGAGAA‑CCCCAAACGGGaaaa                                                                                      >  1:1527943/1‑140 (MQ=255)
                                                   gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAAAAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGgaaa                                                                                      >  1:1246609/1‑140 (MQ=255)
                                                   gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGGATAACAAAAAACTCCTTTT‑CCGGAGAA‑CCCCCACGGGGgaaa                                                                                      >  2:1056509/1‑140 (MQ=255)
                                                    cTGGATCAGATCCGTCGACAGATATGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAACACCCTGT‑CCGGAGAA‑CCCCCACGGGGaaaaa                                                                                     >  2:1485648/1‑139 (MQ=255)
                                                    cTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGCATAACAAAAAAAACCCTGT‑CCGGAGAA‑ACCCAACGGGGgaaaa                                                                                     >  2:1616320/1‑139 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCTGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACg                                                                                    <  2:1459654/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACg                                                                                    <  1:684430/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACg                                                                                    <  2:1213096/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACg                                                                                    <  2:745123/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACg                                                                                    <  1:885873/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACg                                                                                    <  2:1476217/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACg                                                                                    <  2:1323856/140‑1 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGGAAACGaa                                                                                  >  1:488207/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGGGGCATAACAAAAAACTCCTTGT‑CCGGAGAA‑ACCCAACCGGGAAAACGaa                                                                                  >  2:259752/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGGATAACAAAAAAATCCTTTT‑TCGGAGAA‑ACCCCACGGGGgaaaacaa                                                                                  >  2:1125247/1‑136 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGaaa                                                                                 <  2:151151/140‑1 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAAAAAACAAACCCTTGT‑TCCGAGAA‑AGCCAACGGGGAGAACGaaa                                                                                 >  2:17555/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGAATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGaaa                                                                                 >  1:101544/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAACAAAAAACACCTTGT‑CCGGAGAA‑CCCCAACAGGGAAAAAGaaa                                                                                 >  2:1121591/1‑140 (MQ=255)
                                                            gATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCa                                                                             <  1:444056/140‑1 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCaa                                                                            <  1:1121591/140‑1 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCGTAACAAACAAATCCTTTT‑CCGGGGAA‑CCCCCACGGGGGAAAAGAAAATCaa                                                                            >  2:1568610/1‑140 (MQ=255)
                                                               ccGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACTAAATTCAATa                                                                          <  2:51884/140‑1 (MQ=255)
                                                                 gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGCAAAAAAAAGTGGCACAAAAAAAAAATCCTTTTCCCGGGGAC‑CCCCAAC‑GGGAAAAAGAAAATAAATAcc                                                                        >  2:1580455/1‑140 (MQ=255)
                                                                   cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGt                                                                      <  1:1580455/140‑1 (MQ=255)
                                                                     aCAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCg                                                                    <  2:469622/140‑1 (MQ=255)
                                                                     aCAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAAAAAATCCTTTT‑CCGGAGAA‑CCCCAACGGGGGAAAAGAAAATTAATACCGTCg                                                                    >  2:160537/1‑140 (MQ=255)
                                                                         aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTaa                                                                >  1:1139113/1‑140 (MQ=255)
                                                                         aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAAAAAACAACACCTTGT‑CCGGAGAA‑CCCCCACGGGGGAAACGAAAATCAATAACGTCGGGaa                                                                >  2:326010/1‑140 (MQ=255)
                                                                          tACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGGAAACGAAATTCAATAACGTCCGTAAt                                                               >  2:1023085/1‑140 (MQ=255)
                                                                             gcagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGAc                                                            <  1:86619/140‑1 (MQ=255)
                                                                               agcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCGTAAAAAACAACTCCCTGT‑CCGGAGAA‑ACCCAACGGGGGAAAAGAAAATTAATAACGTCCGGAATGACGa                                                          >  2:43148/1‑140 (MQ=255)
                                                                                gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑ACGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaa                                                         <  1:1452979/140‑1 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                        <  1:1115025/140‑1 (MQ=255)
                                                                                   aggTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                      <  1:178820/138‑1 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCTTCGGTAATGACGAAAgg                                                      <  1:1038057/140‑1 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                      <  1:712206/140‑1 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                      <  2:916988/140‑1 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAAGGCATAAAAAACAACTCCTTGT‑CCGGGGAACCCCCAACGGGGAAAA‑GAAAATCAATAACCTCGGGAATTACGAAAgg                                                      >  2:1115025/1‑140 (MQ=255)
                                                                                    aGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAAAAAATCCTTGT‑CCGGGGAA‑CCCCAACGGGGAAAAAGAAAAACAAAACCGTCGGGGATGACGaaaagg                                                     >  2:808212/1‑137 (MQ=255)
                                                                                         tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGAGGCATAACAAAAAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGGAAAAGAAAATCAATACCGTCGGGAATGACGAAAGGCAGGTg                                                >  2:611121/1‑140 (MQ=255)
                                                                                           cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag                                              <  2:611665/140‑1 (MQ=255)
                                                                                            aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                             <  2:1580254/140‑1 (MQ=255)
                                                                                                tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAggg                                         >  1:955256/1‑140 (MQ=255)
                                                                                                tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAACAACCCCTTGT‑CCGGGGAA‑ACCCCACGGGGGAAAAGAAAATTAAAACCGTCGGGAATGACGAAAGGCAGGGGGGAAggg                                         >  2:273941/1‑140 (MQ=255)
                                                                                                    cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAAc                                     <  1:386125/140‑1 (MQ=255)
                                                                                                      ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                   <  1:1012330/140‑1 (MQ=255)
                                                                                                         tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                                <  2:955256/140‑1 (MQ=255)
                                                                                                              aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                           <  1:43148/140‑1 (MQ=255)
                                                                                                                aaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAAt                         <  2:310889/140‑1 (MQ=255)
                                                                                                                    aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                     <  1:370655/140‑1 (MQ=255)
                                                                                                                    aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                     <  1:970825/140‑1 (MQ=255)
                                                                                                                        tGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGaa                 <  1:746216/140‑1 (MQ=255)
                                                                                                                                 ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa        <  1:1303917/140‑1 (MQ=255)
                                                                                                                                       tAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAc  <  1:1574608/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                             
GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAC  >  NC_000913/4568369‑4568643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑