Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG28.9% 305.3 / 20.2 160T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (34/79);  new base G (46/0);  total (81/79)
Fisher's exact test for biased strand distribution p-value = 2.62e-18
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 167 total aligned reads displayed.

GCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAT  >  NC_000913/4568365‑4568639
                                                                                                                                            |                                                                                                                                         
gcagGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGt                                                                                                                                           >  1:584860/1‑140 (MQ=255)
    gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGaaaa                                                                                                                                       >  1:312368/1‑140 (MQ=255)
         aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACg                                                                                                                                  <  1:1135632/140‑1 (MQ=255)
           aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTg                                                                                                                                <  2:1564376/140‑1 (MQ=255)
           aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTg                                                                                                                                <  1:1695460/140‑1 (MQ=255)
                cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATa                                                                                                                           <  1:1099107/140‑1 (MQ=255)
                cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATa                                                                                                                           >  1:139475/1‑140 (MQ=255)
                cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGAGGCATa                                                                                                                           >  2:1801588/1‑140 (MQ=255)
                 aTCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATaa                                                                                                                          <  1:2398990/140‑1 (MQ=255)
                 aTCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAATGGGATaa                                                                                                                          >  1:590572/1‑140 (MQ=255)
                     gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATaaaaaa                                                                                                                      >  2:982824/1‑140 (MQ=255)
                     gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACCTGGCATaacaaa                                                                                                                      >  1:722008/1‑140 (MQ=255)
                     gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAATGGCATaacaaa                                                                                                                      >  2:706106/1‑140 (MQ=255)
                         tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAaacaac                                                                                                                  >  1:1555729/1‑140 (MQ=255)
                         tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAaacaac                                                                                                                  >  1:1827527/1‑140 (MQ=255)
                         tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAaacaac                                                                                                                  >  1:315555/1‑140 (MQ=255)
                                aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAACTGGGATAACAAAAAACTCCTTGt                                                                                                           >  2:945868/1‑140 (MQ=255)
                                aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGAGGCATAAAAAACAACACCtttt                                                                                                           >  2:49069/1‑138 (MQ=255)
                                aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGACATGGC‑GGGTAAAAAAAAGTGGGATAAAAAACAACCCCtctt                                                                                                           >  2:327836/1‑137 (MQ=255)
                                 cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGGGGGATAACAAAAAACTCCTTGTc                                                                                                          >  1:852287/1‑140 (MQ=255)
                                 cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGAAAAAAAAAAGGGCATAAAAAAAAACCCCTTGTc                                                                                                          >  2:1035393/1‑140 (MQ=255)
                                      cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGga‑g                                                                                                    <  2:173449/140‑1 (MQ=255)
                                          ttAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAAAAAACAACTCCTTTTCCGGG‑GAAcc                                                                                                >  1:1407743/1‑140 (MQ=255)
                                           tAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGAGGCATAACAAACAAATCCCTTTCCGGG‑GAAccc                                                                                               >  2:2463006/1‑140 (MQ=255)
                                              tGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAAAAAAAAAATCCTTGTCCGGG‑GAACCCC‑aa                                                                                           >  1:1999546/1‑140 (MQ=255)
                                                aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAAAAAAAAAACCCTTGTCCCGG‑GAAACCC‑AAcc                                                                                         >  2:1288554/1‑139 (MQ=255)
                                                  cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACGGGGCA‑AACAAAAAAAACCTTTTCTCGG‑GAACCCC‑CACagg                                                                                       >  2:2386513/1‑140 (MQ=255)
                                                  cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGAGGCGTAAAAAACAAAACCCTTTCCGGG‑GAAACCC‑AACggg                                                                                       >  2:2179894/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACgggg                                                                                      >  1:2301973/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACgggg                                                                                      >  1:2122088/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAAAAAACAACTCCTTGTCCGGA‑GAAACCC‑AACgggg                                                                                      >  1:2296545/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGGATAACAAAAAACTCCTTGTCCGGG‑GAACCCC‑AACgggg                                                                                      >  1:1832971/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAACAACTCCTTTTCCGGA‑GAACCCC‑AACgggg                                                                                      >  1:658626/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGCAAAAAAACGTGGCATAAAAAACAACACCTTCTCCCGA‑GAAacccccagcgg                                                                                       >  1:884038/1‑133 (MQ=255)
                                                     aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGTGGCATAAAAAACAACTCCTTGTTCGGA‑GAACCCC‑AACggggga                                                                                    >  1:2274776/1‑138 (MQ=255)
                                                       gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGG‑‑GAGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAAc                                                                                 >  1:1159079/1‑140 (MQ=255)
                                                        cTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGG‑‑GAGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACg                                                                                <  2:1159079/140‑1 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACg                                                                                <  1:2029389/140‑1 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACg                                                                                <  1:201475/140‑1 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACg                                                                                <  2:789418/140‑1 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACg                                                                                <  2:584860/140‑1 (MQ=255)
                                                           gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACAGGGCATAACAAACAACTCCTTGTCCGGG‑GAACCCC‑AACGGGGAAAAAGaa                                                                              >  1:1439399/1‑140 (MQ=255)
                                                           gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAAAAAACAAACCCTTTTCCGGA‑GAAACCC‑AACAGGGGAAAAGaa                                                                              >  2:689059/1‑140 (MQ=255)
                                                           gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAAGGGCCTAAAAAACAAATCCTTTTCCGGG‑GTAACCC‑ACAGGGGGAAACGaa                                                                              >  2:164142/1‑140 (MQ=255)
                                                           gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAAAAAAAAAAACCTTTTCCGGG‑GGACCCC‑AACGGGGGAAAAGaa                                                                              >  2:1156084/1‑140 (MQ=255)
                                                           gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGAGGCATAACAAAAAACTCCTTGTCCCGG‑GAACCCC‑AACGGGGGAAACGaa                                                                              >  2:594457/1‑140 (MQ=255)
                                                            aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTGAAAAAAAAAGACATAAAAAAAAAAACCCCATACGGG‑GGAGCCC‑CACGGGGAAAAcacaa                                                                             >  2:1895893/1‑136 (MQ=255)
                                                                gATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAAAAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGGAAACGAAAATCa                                                                         >  2:2124960/1‑140 (MQ=255)
                                                                 aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAACAAAAAACTCCCTGTCCGGG‑GAACCCC‑AACGGGGAAAACGAAAATCaa                                                                        >  1:1625599/1‑140 (MQ=255)
                                                                 aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACCAGGGATAACAAAAAACTCCTTTGCCCGA‑GAACCCC‑AACGGGGGAAAAGaaaattaa                                                                        >  2:277457/1‑135 (MQ=255)
                                                                 aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGGAAAAGAAATTCaa                                                                        >  2:1418252/1‑140 (MQ=255)
                                                                 aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATAAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAACTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCaa                                                                        >  2:323476/1‑140 (MQ=255)
                                                                  tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAAt                                                                       <  2:2156195/140‑1 (MQ=255)
                                                                     gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATAcc                                                                    <  2:2101552/140‑1 (MQ=255)
                                                                     gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAAAAAAAAACTCCTTGTCCGGA‑GAAACCC‑CACGGGGGAAACGAAAATCAATAcc                                                                    >  2:1366623/1‑140 (MQ=255)
                                                                      tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAAAAAACAACTCCTTGTCCGGA‑GAACCCC‑CACGGGGGAAAAGAAAATCAATAccc                                                                   >  2:78605/1‑139 (MQ=255)
                                                                           aGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTTTCCGGA‑GAACCCC‑CACGGGGGAAAAGAAATTCAAAACCGTCggg                                                              >  2:2078200/1‑139 (MQ=255)
                                                                             aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTaa                                                            <  1:985327/140‑1 (MQ=255)
                                                                             aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTaa                                                            <  1:907854/140‑1 (MQ=255)
                                                                             aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTaa                                                            <  1:615319/140‑1 (MQ=255)
                                                                             aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTaa                                                            >  1:39274/1‑140 (MQ=255)
                                                                                  cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg                                                       <  1:2226481/140‑1 (MQ=255)
                                                                                    gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaa                                                     <  1:2225018/140‑1 (MQ=255)
                                                                                     caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                    <  1:2157107/140‑1 (MQ=255)
                                                                                     caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGGATAAAAAAAAAATCCTTGTCCGGA‑GGACCCC‑AACGGGGGAAAAGAAAATCAATACCGTCGGGAATGACGaaa                                                    >  2:2157107/1‑140 (MQ=255)
                                                                                     caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGA‑GAAACCC‑CACGGGGGAAACGAAAATCAATAACCTCGGGAATGACGaaa                                                    >  2:445548/1‑140 (MQ=255)
                                                                                       aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                  <  2:1553555/140‑1 (MQ=255)
                                                                                       aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                  <  2:1016776/140‑1 (MQ=255)
                                                                                          tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg                                               <  1:82489/140‑1 (MQ=255)
                                                                                          tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg                                               <  1:682761/140‑1 (MQ=255)
                                                                                                aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                         <  1:125502/140‑1 (MQ=255)
                                                                                                aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                         <  2:88068/140‑1 (MQ=255)
                                                                                                  aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg                                       <  1:194592/140‑1 (MQ=255)
                                                                                                  aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGAGGCATAAAAAAAAACTCCTTTTCCGGA‑GAACCCC‑AAAGGGGGAAAAGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGCGAGaaa                                       >  2:624628/1‑139 (MQ=255)
                                                                                                   aTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAA‑GGGGCATAACAAACAACACCTTTTGCGGG‑GAACCCCAAAAGGGGAAACCAAAATTC‑ATAACATCGGAAATGACGGAAAGCAGGGGGGAAggg                                     >  2:1858246/1‑140 (MQ=255)
                                                                                                       aCGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaa                                  <  2:1806583/140‑1 (MQ=255)
                                                                                                        cGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACAAGGCATAACAAAAAACCCCTTTTCCGGAGGAACCCC‑AACGGGGAAAA‑GAAAATTAATACCCACCGGAAAGACTGAAAGCAGGGGAGGAGGGCaaa                                 >  2:1125551/1‑139 (MQ=255)
                                                                                                        cGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGAGGCATAACAAAAAACTCCTTGTCCGGG‑GAACCCC‑CAAGGGGGAAAAGAAAATTAATACCCTCGGGAATGACGAAAAGCAGGGGAGAAGGGccaa                                 >  2:1645660/1‑137 (MQ=255)
                                                                                                        cGCCATCGGGAAAAACAGCGTGGCGACATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAAc                                 <  1:327836/140‑1 (MQ=255)
                                                                                                          ccATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                               <  1:179553/140‑1 (MQ=255)
                                                                                                            aTCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAAAAAAAAACTCCTTGTCCGGA‑GAACCCC‑AACAGGGAAAACGAAAATCAAAACCGTCGGGAATGACGAAAAGGAGGGGAGAAGGGCAACgaga                             >  2:194592/1‑140 (MQ=255)
                                                                                                             tCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                            <  1:1549473/140‑1 (MQ=255)
                                                                                                              cGGGAAAAACAGCGTGGCGGCATGGT‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                            >  2:2446891/1‑139 (MQ=255)
                                                                                                               gggAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTg                          <  2:851874/140‑1 (MQ=255)
                                                                                                               gggAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTg                          <  1:1035393/140‑1 (MQ=255)
                                                                                                                  aaaaaCAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                       <  2:2229971/140‑1 (MQ=255)
                                                                                                                  aaaaaCAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                       <  2:139475/140‑1 (MQ=255)
                                                                                                                  aaaaaCAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                       <  1:794522/140‑1 (MQ=255)
                                                                                                                  aaaaaCAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                       <  1:1645660/140‑1 (MQ=255)
                                                                                                                         gCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAAAAAATCCTTTTCCGGA‑GAAACCC‑AACGGGGGAAAAGAAAATCAATACCCTCGGGAATGACGAAAAGCAGGGGGGAAGGGGAACGAGACTGCAAAAGTACt                >  2:1327522/1‑140 (MQ=255)
                                                                                                                          cGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAAAAAACAACTCCTTGTCCGGA‑GAAACCC‑AACGGGGGAAAAGAAAATCAATACCCTCGGGAATGACGAAAAGCAGGGGGGAAGGGGAACGAGACTGCAAATGTACTg               >  2:794522/1‑140 (MQ=255)
                                                                                                                              gcggcATGGC‑GGGTAAAAAAAAGTGGGATAAAAAAAAACTCCTTGTCCGGG‑GAAACCC‑CACGGGGGAAAAGAAAATTAATACCCTCGGGAATGACGAAAAGGAGGGGAGAAGGGGAACGAGACTGCAAATGTACTGAAtt           >  2:438142/1‑140 (MQ=255)
                                                                                                                                ggcATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTc         <  2:2294447/140‑1 (MQ=255)
                                                                                                                                 gcATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCa        <  2:39274/140‑1 (MQ=255)
                                                                                                                                   aTGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg      <  2:1999546/140‑1 (MQ=255)
                                                                                                                                   aTGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg      <  1:2078200/140‑1 (MQ=255)
                                                                                                                                     ggC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa    <  1:1366623/140‑1 (MQ=255)
                                                                                                                                     ggC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa    <  1:392265/140‑1 (MQ=255)
                                                                                                                                       c‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt  <  2:573374/140‑1 (MQ=255)
                                                                                                                                       c‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt  <  1:467850/140‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                         
GCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAT  >  NC_000913/4568365‑4568639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑