BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,082,546	A→T	T212S (ACC→TCC)	loiP →	metalloprotease LoiP

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,082,546	0	A	T	100.0%	493.5 / NA	139	T212S (ACC→TCC)	loiP	metalloprotease LoiP
Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (69/70); total (69/70)

Only 100 of 141 total aligned reads displayed.

GTTTATCTCAATCACAACTTGGTAATCTGGGCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCACCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTG  >  NC_000913/3082409‑3082680

gTTTATCTCAATCACAACTTGGTAATCTGGGCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGcctcc                                                                                                                                      >  2:2019449/1‑140 (MQ=255)

    aTCTCAATCACAACTTGGTAATCTGGGCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCt                                                                                                                                  >  2:1009879/1‑140 (MQ=255)

    aTCTCAATCACAACTTGGTAATCTGGGCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCt                                                                                                                                  >  1:935658/1‑140 (MQ=255)

         aaTCACAACTTGGTAATCTGGGCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGaa                                                                                                                             <  2:935658/140‑1 (MQ=255)

           tCACAACTTGGTAATCTGGGCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGaaaa                                                                                                                           >  2:880723/1‑140 (MQ=255)

           tCACAACTTGGTAATCTGGGCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGaaaa                                                                                                                           <  2:633791/140‑1 (MQ=255)

           tCACAACTTGGTAATCTGGGCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGaaaa                                                                                                                           >  1:971901/1‑140 (MQ=255)

           tCACAACTTGGTAATCTGGGCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGaaaa                                                                                                                           >  2:914121/1‑140 (MQ=255)

           tCACAACTTGGTAATCTGGGCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGaaaa                                                                                                                           >  2:2020517/1‑140 (MQ=255)

                 cTTGGTAATCTGGGCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGc                                                                                                                     <  1:2461042/140‑1 (MQ=255)

                    ggTAATCTGGGCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCaaa                                                                                                                  >  2:1131612/1‑140 (MQ=255)

                    ggTAATCTGGGCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCaaa                                                                                                                  >  2:2175419/1‑140 (MQ=255)

                      tAATCTGGGCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAAc                                                                                                                >  1:2021504/1‑140 (MQ=255)

                         tCTGGGCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTgg                                                                                                             >  2:1781661/1‑140 (MQ=255)

                            gggCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGgaag                                                                                                          <  2:900083/140‑1 (MQ=255)

                            gggCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGgaag                                                                                                          >  1:34801/1‑140 (MQ=255)

                            gggCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGgaag                                                                                                          >  1:486601/1‑140 (MQ=255)

                            gggCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGgaag                                                                                                          >  2:1677106/1‑140 (MQ=255)

                            gggCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGgaag                                                                                                          >  2:2143811/1‑140 (MQ=255)

                             ggCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGgaaga                                                                                                         >  2:711956/1‑140 (MQ=255)

                             ggCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGgaaga                                                                                                         >  2:503246/1‑140 (MQ=255)

                                 agaAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGt                                                                                                     <  2:486601/140‑1 (MQ=255)

                                     aTTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGcc                                                                                                 <  1:2042835/140‑1 (MQ=255)

                                       tAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCaa                                                                                               >  2:1230708/1‑140 (MQ=255)

                                       tAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCaa                                                                                               >  1:1131911/1‑140 (MQ=255)

                                       tAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCaa                                                                                               <  2:1978662/140‑1 (MQ=255)

                                           cAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCt                                                                                           <  1:451159/140‑1 (MQ=255)

                                            aaTTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTc                                                                                          >  1:2115569/1‑140 (MQ=255)

                                            aaTTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTc                                                                                          >  1:674342/1‑140 (MQ=255)

                                             aTTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCa                                                                                         >  1:2459479/1‑140 (MQ=255)

                                             aTTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCa                                                                                         >  1:2227481/1‑140 (MQ=255)

                                              ttCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGTATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCaa                                                                                        >  2:744102/1‑140 (MQ=255)

                                              ttCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCaa                                                                                        <  1:1225026/140‑1 (MQ=255)

                                              ttCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCaa                                                                                        >  2:1488156/1‑140 (MQ=255)

                                              ttCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCaa                                                                                        >  1:1972386/1‑140 (MQ=255)

                                              ttCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCaa                                                                                        >  2:737356/1‑140 (MQ=255)

                                                     ttCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTga                                                                                 <  1:817651/140‑1 (MQ=255)

                                                         cccAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTgacgac                                                                             <  2:1972386/140‑1 (MQ=255)

                                                             gcgcCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATc                                                                         >  1:228215/1‑140 (MQ=255)

                                                             gcgcCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATc                                                                         >  1:1342085/1‑140 (MQ=255)

                                                               gcCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTga                                                                                 >  1:2463415/1‑130 (MQ=255)

                                                               gcCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTga                                                                                 <  2:2463415/130‑1 (MQ=255)

                                                                   ggAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCAt                                                                   >  2:1942222/1‑140 (MQ=255)

                                                                    gAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCa                                                                    >  1:2063874/1‑138 (MQ=255)

                                                                    gAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCa                                                                    <  2:2063874/138‑1 (MQ=255)

                                                                       gCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATccgc                                                               <  2:1134888/140‑1 (MQ=255)

                                                                           aaGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGaa                                                           <  2:1800465/140‑1 (MQ=255)

                                                                               cGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAAcgcg                                                       <  1:922222/140‑1 (MQ=255)

                                                                               cGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAAcgcg                                                       <  1:880723/140‑1 (MQ=255)

                                                                               cGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAAcgcg                                                       <  1:2019449/140‑1 (MQ=255)

                                                                               cGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAAcgcg                                                       >  2:827171/1‑140 (MQ=255)

                                                                                 atgatTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGcc                                                     <  2:1342085/140‑1 (MQ=255)

                                                                                   gatTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCa                                                   <  2:674342/140‑1 (MQ=255)

                                                                                   gatTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCa                                                   <  2:1562876/140‑1 (MQ=255)

                                                                                       attCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCat                                               >  2:582480/1‑140 (MQ=255)

                                                                                          cTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATAtt                                            >  1:800549/1‑140 (MQ=255)

                                                                                             aCGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTcgc                                         >  2:1232420/1‑140 (MQ=255)

                                                                                              cGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGTCCAGCATATTcgcg                                        >  2:2122131/1‑140 (MQ=255)

                                                                                              cGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTcgc                                         <  2:1336347/139‑1 (MQ=255)

                                                                                              cGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTcgc                                         >  1:1345601/1‑139 (MQ=255)

                                                                                                 tcttctGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATc                                     >  2:1209395/1‑140 (MQ=255)

                                                                                                  cttctGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCg                                    <  2:167778/140‑1 (MQ=255)

                                                                                                   ttctGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGc                                                 <  2:1058327/126‑1 (MQ=255)

                                                                                                   ttctGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGc                                                 >  1:1058327/1‑126 (MQ=255)

                                                                                                   ttctGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGc                                   <  1:509470/140‑1 (MQ=255)

                                                                                                   ttctGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGc                                   >  2:1218014/1‑140 (MQ=255)

                                                                                                    tctGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCa                                  >  2:183583/1‑140 (MQ=255)

                                                                                                     ctGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCAt                                 <  1:503453/140‑1 (MQ=255)

                                                                                                        cgcCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAg                              >  1:1881888/1‑140 (MQ=255)

                                                                                                        cgcCAACGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTAAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAg                              <  2:2166909/140‑1 (MQ=255)

                                                                                                             aCGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCgg                         <  2:532769/140‑1 (MQ=255)

                                                                                                             aCGCGGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCgg                         >  2:44508/1‑140 (MQ=255)

                                                                                                              cgcgGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGa                        <  1:197423/140‑1 (MQ=255)

                                                                                                              cgcgGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGa                        <  1:2142597/140‑1 (MQ=255)

                                                                                                              cgcgGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGa                        <  1:1847321/140‑1 (MQ=255)

                                                                                                              cgcgGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGa                        <  2:1549103/140‑1 (MQ=255)

                                                                                                              cgcgGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGa                        <  1:1537030/140‑1 (MQ=255)

                                                                                                              cgcgGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGa                        <  1:1406530/140‑1 (MQ=255)

                                                                                                               gcgGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGAt                       <  1:737356/140‑1 (MQ=255)

                                                                                                               gcgGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGAt                       <  1:183583/140‑1 (MQ=255)

                                                                                                               gcgGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGAt                       <  1:1232420/140‑1 (MQ=255)

                                                                                                                cgGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATg                      <  2:915998/140‑1 (MQ=255)

                                                                                                                cgGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATg                      <  2:922299/140‑1 (MQ=255)

                                                                                                                cgGCATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATg                      <  1:1009879/140‑1 (MQ=255)

                                                                                                                   cATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGa                   <  2:2227481/140‑1 (MQ=255)

                                                                                                                   cATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGa                   <  1:1111841/140‑1 (MQ=255)

                                                                                                                   cATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGa                   <  1:719914/140‑1 (MQ=255)

                                                                                                                   cATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGa                   <  1:711956/140‑1 (MQ=255)

                                                                                                                   cATCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGa                   <  1:2101255/140‑1 (MQ=255)

                                                                                                                    aTCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGAt                  <  2:1200483/140‑1 (MQ=255)

                                                                                                                    aTCAGCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGAt                  >  1:2332504/1‑140 (MQ=255)

                                                                                                                        gCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGAt                  <  2:2263892/136‑1 (MQ=255)

                                                                                                                        gCCCGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGAt                  >  1:2263892/1‑136 (MQ=255)

                                                                                                                         cccGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGt             <  1:1131612/140‑1 (MQ=255)

                                                                                                                         cccGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGt             <  1:1723361/140‑1 (MQ=255)

                                                                                                                          ccGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTa            <  1:1781661/140‑1 (MQ=255)

                                                                                                                          ccGGCAGGTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTa            <  1:146514/140‑1 (MQ=255)

                                                                                                                                 gTCTTGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCtg     <  2:294301/140‑1 (MQ=255)

                                                                                                                                    ttGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCtggtg  <  1:221583/140‑1 (MQ=255)

                                                                                                                                    ttGCCTCCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCtggtg  <  1:1209395/140‑1 (MQ=255)

GTTTATCTCAATCACAACTTGGTAATCTGGGCGAGAAATTAGTCAATTCGCAATTCTCCCAGCGCCAGGAAGCAGAAGCCGATGATTATTCTTACGATCTTCTGCGCCAACGCGGCATCAGCCCGGCAGGTCTTGCCACCAGCTTTGAAAAACTGGCAAAACTGGAAGAAGGTCGCCAAAGCTCAATGTTTGACGACCATCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTG  >  NC_000913/3082409‑3082680

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`