| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 2,337,701 | (CTT)3→2 | coding (1718‑1720/2628 nt) | gyrA ← | DNA gyrase subunit A |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2337697 = | 4 (0.050) | 51 (0.650) | 37/262 | 0.8 | 92.9% | coding (1724/2628 nt) | gyrA | DNA gyrase subunit A |
| ? | NC_000913 | = 2337693 | 4 (0.050) | coding (1728/2628 nt) | gyrA | DNA gyrase subunit A | |||||
CAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGTCTTCTTCTTTAATACGTGCGGCAGATTTACCTTTCCCGCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCT > NC_000913/2337555‑2337828 | cAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGt > 1:71131‑M2/1‑139 (MQ=255)cAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGt > 1:368370‑M2/1‑139 (MQ=255)cAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGt > 2:578603‑M2/1‑139 (MQ=255)cAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGt > 1:331820‑M2/1‑139 (MQ=255) aGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtc > 1:1032000‑M2/1‑138 (MQ=255) aGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtc > 1:277315‑M2/1‑138 (MQ=255) aGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTAGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtc > 2:903189‑M2/1‑138 (MQ=255) cGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttcttta > 2:597928‑M2/1‑131 (MQ=255) cGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttcttta > 1:727556‑M2/1‑131 (MQ=255) cGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatac < 2:60808‑M2/140‑14 (MQ=255) ggACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacg < 1:163535‑M2/140‑15 (MQ=255) gacgacCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgt < 2:407016‑M2/140‑16 (MQ=255) acgacCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtg > 1:335652‑M2/1‑124 (MQ=255) gacCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcg > 1:407016‑M2/1‑122 (MQ=255) gacCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcg > 1:686412‑M2/1‑122 (MQ=255) gcgcgcgcCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcag > 1:1174503‑M2/1‑118 (MQ=255) cgcgcgcCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcaga < 1:982574‑M2/140‑24 (MQ=255) cgcgcgcCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcaga < 1:455114‑M2/140‑24 (MQ=255) cgcgcgcCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcaga < 1:205265‑M2/140‑24 (MQ=255) gcgcgcCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcagat < 1:293836‑M2/140‑25 (MQ=255) gcCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcagatttac < 1:415095‑M2/140‑29 (MQ=255) gcCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcg < 2:756235‑M2/130‑19 (MQ=255) gcCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcg > 1:756235‑M2/1‑112 (MQ=255) gggggctcCCGCCACCTAATAAATTTTCATCGAATAGACGCGACCACGGCGGGAGAACCACAGAATATGGTCGTGAGTTTCCGCCCCCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcagttttccctttcc > 2:835079‑M2/4‑106 (MQ=255) aGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcagatttacctttcc < 1:1037227‑M2/140‑35 (MQ=255) aGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCAAAAAATATGGTGGTGAGTGTCCCCCCCCAGCAGTCGGTCGATAAAGtcttctttaatccgtgcggaagttttccctttcc > 2:754874‑M2/1‑106 (MQ=255) aaCTGATAAACTTTCATCAAATAGCCGCGACCACGGCGGGAGAAGCACAGAATAGGGTCGGGGGTGTTCCCCACCAGCAGTCGGTCAATAAAGTCT‑‑TT‑TTTAATACGTGCGGCAGTTTTCCCTTTCCCGCCACGACGCTg < 2:943852/140‑1 (MQ=255) gATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcagatttccctttcccgccacgacgctgcgct > 2:774970‑M2/1‑89 (MQ=255) aTAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcagatttacctttcccgccccgacgctgcgctt < 2:311392‑M2/140‑53 (MQ=255) aaaaCTTTCATCGAATAGCCGCGACCACGGCGGGAGAAGCAAAAAATATGGTCGTGAGTGTCCCCCACCAGCAGTCGGTCGATAAAGT‑TT‑TT‑TTTAATCCGGGCGGAAGATTTCCCTTTCCCGCCACGACGCTGCGCTTc < 2:1065523/139‑1 (MQ=255) ttCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcagatttacctttcccgccacgacgctgcgcttcgtattc < 1:764949‑M2/140‑60 (MQ=255) aaTAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcagatttacctttcccgccacgacgctgcgcttcgtattcagaaagc < 2:348088‑M2/140‑67 (MQ=255) aGCCGCGACCACGGCGGGAAAAGCAAAAAATATGGTCGTGAGTTTTCGCCCCCAGCAGTCGGTCAAAAAAGtcttctttaatccgtgcggcagatttccctttcccgccacgacgctgcgcttcgtattcagaaagcggc > 2:764949‑M2/1‑71 (MQ=255) aGACGCGACCACGGCGGGAGAAGCACAAAATATGGTCGGGAGTGTCCGCCCCCAGCAGTCGGTCAAAAAAGtcttctttaatacgggcggcagttttaccttccccgccacgacgctgcgcttcgtattcagaaagcggc > 2:205265‑M2/1‑71 (MQ=255) gccgcgACCCCGGCGGGAAAAGCAAAAAATATGGTCGTGGGTGTCCGCCCCCAGCAGTCGGTCGATAAAGTCT‑‑TT‑TTTAATGCGGGCGGAAGATTTCCCTTCCCCGCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCt < 2:982574/138‑1 (MQ=255) cgcgACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcagatttacctttcccgccacgacgctgcgcttcgtattcagaaagcggctga < 1:855288‑M2/140‑73 (MQ=255) cccaGGGCGGGAGAAGCACAGAATTTGGTCGTGAGTTTCCCCCACCAGCAGTCGGTCAATAAAGtcttttttaatccgtggggcagatttccttttcccgccacgacgctgcgcttcgtattcagaaagcggctgatact > 2:455114‑M2/2‑64 (MQ=255) aCCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcagatttacctttcccgccacgacgctgcgcttcgtattcagaaagcggctgatact < 1:1243466‑M2/140‑77 (MQ=255) cGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcagatttacctttcccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaac < 1:665519‑M2/140‑81 (MQ=255) ggggagAAGCACAGAATTTGGTCGTGAGTGTTCCCCACCAGCAGTCGGTCGATAAAGtcttttttaatacgtgcggcagatttccctttcccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgta > 2:665519‑M2/3‑57 (MQ=255) agaagaAAAGAATTTGGTCGTGGGTTTCCCCCACCACGAGTCGGTCGATAAAGT‑TT‑TT‑TTTAATCCGGGCGGAAGTTTTCCTTTCCCCGCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGccc < 2:1365748/140‑1 (MQ=255) aaGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcagatttacctttcccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccctg < 2:179613‑M2/140‑90 (MQ=255) cacaGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcagatttacctttcccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccccggtg < 1:709478‑M2/140‑93 (MQ=255) ggTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcagatttacctttcccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccctggtgagagagcgtc < 1:745093‑M2/140‑103 (MQ=255) tGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcagatttacctttcccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccctggtgagagagcgtcacgac < 1:382622‑M2/140‑108 (MQ=255) gtgtCCCCCCCCAGCAGTGGGTCGATAAAGttttttttaatacgtgcggaagatttccctttcccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccctggtgagagagcgtcacgaccac > 2:1037227‑M2/1‑30 (MQ=255) cGCCACCAGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcagatttacctttcccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccctggtgagagagcgtcacgaccacatctt < 1:19107‑M2/140‑116 (MQ=255) caccaGCAGTCGGTCGATAAAGtcttctttaatacgtgtggcagatttacctttcccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccctggtgagagagcgtcacgaccacatcttcct < 2:122022‑M2/140‑119 (MQ=255) ccaGCAGTCGGTCGATAAAGtcttctttaatacgtgcggcagatttccctttcccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccctggtgagagagcgtcacgaccacatcttcctgg > 1:162046‑M2/1‑20 (MQ=255) ccaGCAGTCGGTCGATAAAGtcttctttaatacgggcggcagttttccttttcccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccctggtgagagagcgtcacgaccacatcttcctgg > 1:60808‑M2/1‑20 (MQ=255) cagcagTCGGTCGATAAAGtcttctttaatacgtgcggcagatttacctttcccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccctggtgagagagcgtcacgaccacatcttcctggg < 2:174121‑M2/140‑122 (MQ=255) cagcagTCGGTCGATAAAGtcttctttaatacgtgcggcagatttacctttcccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccctggtgagagagcgtcacgaccacatcttcctggg < 1:354181‑M2/140‑122 (MQ=255) gcagTCGGTCGATAAAGtcttctttaatacgtgcggcagatttacctttcccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccctggtgagagagcgtcacgaccacatcttcctgggtg < 1:1304943‑M2/140‑124 (MQ=255) gggtcgaTAAATtcttttttaatccgtgcggcagttttcctttccccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccctggtgagagagcgtcacgaccacatcttcctgggtgatcag > 1:1224417‑M2/2‑12 (MQ=255) cggtcgATAAAGtcttctttaatacgtgcggcagatttacctttcccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccctggtgagagagcgtcacgaccacatcttcctgggtgatcag > 1:348088‑M2/1‑12 (MQ=255) ggtcgATAAATtttttttaaatacgtgcggcagatttccctttcccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccctggtgagagagcgtcacgaccacatcttcctgggtgatcaga > 2:1243466‑M2/1‑11 (MQ=255) gtcgATAAAGtcttctttaatacgtgcggcagatttacctttcccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccctggtgagagagcgtcacgaccacatcttcctgggtgatcagat < 1:573867‑M2/140‑131 (MQ=255) gtcgATAAAGtcttctttaatacgtgcggcagacttacctttcccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccctggtgagagagcgtcacgaccacatcttcctgggtgatcagat < 1:63840‑M2/140‑131 (MQ=255) cgATAAAGtcttctttaatacgtgtggcagatttacctttcccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccctggtgagagagcgtcacgaccacatcttcctgggtgatcagatct < 2:207272‑M2/140‑133 (MQ=255) aaaagttttctttactgcgtgcggcagttttcccttccccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccctggtgagagagcgtcacgaccacatcttcctgggtgatcagatcttcc > 2:19107‑M2/2‑5 (MQ=255) aaaagtcttttttaatacgggcggcagttttcccttccccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccctggtgagagagcgtcacgaccacatcttcctgggtgatcagatcttcc > 1:711946‑M2/2‑5 (MQ=255) aaaagtcttttttaatacgggcggaagttttcctttccccgccacgacgctgcgcttcgtattcagaaagcggctgatacttaacgtagccctggtgagagagcgtcacgaccacatcttcctgggtgatcagatcttcc > 2:293836‑M2/2‑5 (MQ=255) | CAGGTTGACGATCGGACGACCGCGCGCGCCACGAGTGGCTTCCGGCAACTGATAAACTTTCATCGAATAGACGCGACCACGGCTGGAGAAGCACAGAATATGGTCGTGAGTGTTCGCCACCAGCAGTCGGTCGATAAAGTCTTCTTCTTTAATACGTGCGGCAGATTTACCTTTCCCGCCACGACGCTGCGCTTCGTATTCAGAAAGCGGCTGATACTTAACGTAGCCCTGGTGAGAGAGCGTCACGACCACATCTTCCTGGGTGATCAGATCT > NC_000913/2337555‑2337828 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |