mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,001,918 | 0 | A | C | 50.0% | 3.6 / 21.4 | 24 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 4,111,747 | 0 | G | T | 43.5% | 33.7 / 15.9 | 23 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 3,206,435 | 0 | C | T | 38.1% | 20.1 / 12.4 | 21 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 4,604,344 | 0 | C | T | 37.0% | 30.8 / 13.2 | 27 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 29,496 | 0 | T | A | 35.0% | 28.3 / 10.2 | 20 | intergenic (+301/‑155) | dapB/carA | 4‑hydroxy‑tetrahydrodipicolinate reductase/carbamoyl phosphate synthetase subunit alpha |
| * | NC_000913 | 4,287,719 | 0 | T | A | 21.6% | 85.7 / 10.7 | 37 | intergenic (‑348/‑45) | acs/nrfA | acetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 20.8% | 106.3 / 20.4 | 48 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 36 (1.000) | 4 (0.120) | 4/258 | 3.2 | 9.9% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 39 (1.160) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 2130916 | 24 (0.670) | 3 (0.090) | 3/258 | 3.6 | 9.8% | coding (1155/1218 nt) | wcaC | putative colanic acid biosynthesis glycosyl transferase |
| ? | NC_000913 | = 2131044 | 33 (0.980) | coding (1027/1218 nt) | wcaC | putative colanic acid biosynthesis glycosyl transferase | |||||
| * | ? | NC_000913 | = 4034954 | 34 (0.940) | 3 (0.080) | 3/272 | 3.8 | 7.5% | coding (347/546 nt) | hemG | protoporphyrinogen oxidase |
| ? | NC_000913 | = 4035048 | 41 (1.160) | coding (441/546 nt) | hemG | protoporphyrinogen oxidase | |||||