New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2437298 =	43 (0.900)	3 (0.060)	3/274	5.1	8.0%	coding (554/1137 nt)	pdxB	erythronate‑4‑phosphate dehydrogenase
	?	NC_000913	3677077 =	26 (0.550)					coding (1274/2061 nt)	yhjG	AsmA family protein YhjG
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAGCACTACGCTTAACTTCTGGCCTTCATTCAGGCAGGTCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCCGCGCGCTGGACTAACTCATCCAGCGAGCGGAAATCACCCTCATCCCCACGGTCGGCGCGAGGCGGATCGCAAAGTAAGGTTTTAATCC  >  NC_000913/2437159‑2437436                                                                                                                                            |                                                                                                                                           cAGCACTACGCTTAACTTCTGGCCTTCATTCAGGCAGGTCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCg                                                                                                                                            >  2:764345/1‑140 (MQ=255)       tACGCTTAACTTCTGGCCTTCATTCAGGCAGGTCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGt                                                                                                                                      <  1:764345/140‑1 (MQ=255)        aCGCTTAACTTCTGGCCTTCATTCAGGCAGGTCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTa                                                                                                                                     <  2:195621/140‑1 (MQ=255)             tAACTTCTGGCCTTCATTCAGGCAGGTCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGAc                                                                                                                                <  2:3390/140‑1 (MQ=255)                  tCTGGCCTTCATTCAGGCAGGTCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCt                                                                                                                           <  1:379932/140‑1 (MQ=255)                   cTGGCCTTCATTCAGGCAGGTCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCtt                                                                                                                          >  2:553305/1‑140 (MQ=255)                     ggCCTTCATTCAGGCAGGTCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTa                                                                                                                        <  1:529793/140‑1 (MQ=255)                          tcattcaGGCAGGTCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAagag                                                                                                                   <  1:537181/140‑1 (MQ=255)                           cattcaGGCAGGTCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGt                                                                                                                  >  2:777041/1‑140 (MQ=255)                           cattcaGGCAGGTCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGt                                                                                                                  >  2:252838/1‑140 (MQ=255)                            attcaGGCAGGTCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTg                                                                                                                 <  1:612339/140‑1 (MQ=255)                                     ggTCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAgaga                                                                                                                    <  2:462234/128‑1 (MQ=255)                                     ggTCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAaga                                                                                                                    >  1:462234/1‑128 (MQ=255)                                      gTCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAagag                                                                                                                   <  2:211325/128‑1 (MQ=255)                                      gTCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAagag                                                                                                                   >  1:211325/1‑128 (MQ=255)                                      gTCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAaga                                                                                                                    >  1:518368/1‑127 (MQ=255)                                      gTCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAaga                                                                                                                    <  2:518368/127‑1 (MQ=255)                                      gTCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGaa                                                                                                       >  1:729322/1‑140 (MQ=255)                                       tCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGaaa                                                                                                      <  1:553305/140‑1 (MQ=255)                                            aaCGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAg                                                                                                 >  1:100243/1‑140 (MQ=255)                                                cAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGa                                                                                                        <  1:659968/129‑1 (MQ=255)                                                cAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGa                                                                                                        >  2:659968/1‑129 (MQ=255)                                                        tCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCcgcgcg                                                                                     <  2:688522/140‑1 (MQ=255)                                                        tCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCcgcgcg                                                                                     <  1:596566/140‑1 (MQ=255)                                                           acgacTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCCGCGCGCTg                                                                                  >  1:657527/1‑140 (MQ=255)                                                             gacTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCcgcgcg                                                                                     <  1:583366/135‑1 (MQ=255)                                                             gacTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCcgcgcg                                                                                     >  2:583366/1‑135 (MQ=255)                                                             gacTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCCGCGCGCTGGa                                                                                >  1:709055/1‑140 (MQ=255)                                                             gacTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCCGCGCGCTGGa                                                                                <  2:100243/140‑1 (MQ=255)                                                             gacTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCCGCGCGCTGGa                                                                                <  1:492530/140‑1 (MQ=255)                                                                  cgcCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCCGCGCGCTGGACTAAc                                                                           >  1:606250/1‑140 (MQ=255)                                                                                     cAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCCGCGCGCTGGACTAACTCATCCAGCGAGCGGAAAt                                                        <  1:276234/140‑1 (MQ=255)                                                                                             cTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCCGCGCGCTGGACTAACTCATCCagcgagcg                                                             <  1:160164/127‑1 (MQ=255)                                                                                             cTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCCGCGCGCTGGACTAACTCATCCagcgagcg                                                             >  2:160164/1‑127 (MQ=255)                                                                                             cTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCCGCGCGCTGGACTAACTCATCCAGCGAGCGGAAATCACCCTCa                                                >  2:432546/1‑140 (MQ=255)                                                                                             cTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCCGCGCGCTGGACTAACTCATCCAGCGAGCGGAAATCACCCTCa                                                >  2:73722/1‑140 (MQ=255)                                                                                                            tACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCCGCGCGCTGGACTAACTCATCCAGCGAGCGGAAATCACCCTCATCCCCACGGTCGgcg                                 <  1:73722/140‑1 (MQ=255)                                                                                                             aCGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCCGCGCGCTGGACTAACTCATCCAGCGAGCGGAAATCACCCTCATCCCCACGGTCGgcgc                                >  2:586688/1‑140 (MQ=255)                                                                                                                     gTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCCGCGCGCTGGACTAACTCATCCAGCGAGCGGAAATCACCCTCATCCCCACGGTCGGCGCGAGGCGGa                        <  1:777041/140‑1 (MQ=255)                                                                                                                           cATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCCGCGCGCTGGACTAACTCATCCAGCGAGCGGAAATCACCCTCATCCCCACGGTCGGCGCGAGGCGGATCGCaa                  >  2:720878/1‑140 (MQ=255)                                                                                                                                         aGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCCGCGCGCTGGACTAACTCATCCAGCGAGCGGAAATCACCCTCATCCCCACGGTCGGCGCGAGGCGGATCGCAAAGTAAGGTTTTAAt    >  1:670884/1‑140 (MQ=255)                                                                                                                                          gCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCCGCGCGCTGGACTAACTCATCCAGCGAGCGGAAATCACCCTCATCCCCACGGTCGGCGCGAGGCGGATCGCAAAGTAAGGTTTTAATc   >  1:298061/1‑140 (MQ=255)                                                                                                                                           cGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCCGCGCGCTGGACTAACTCATCCAGCGAGCGGAAATCACCCTCATCCCCACGGTCGGCGCGAGGCGGATCGCAAAGTAAGGTTTTAATcc  >  1:473177/1‑140 (MQ=255)                                                                                                                                            |                                                                                                                                           CAGCACTACGCTTAACTTCTGGCCTTCATTCAGGCAGGTCAGCAACGCAGTATTATCGACGACTGCGCCACGGCAGGCGTTAATCAGAATCGCTCCGGGCTTCAGGCTACGGATCAGTTTTTCATCCGCCAGATGTAGCGTTTTGTACGGACCATCTTTAAAGAGTGGCGTATGGAAAGTCAGAATATCCGCGCGCTGGACTAACTCATCCAGCGAGCGGAAATCACCCTCATCCCCACGGTCGGCGCGAGGCGGATCGCAAAGTAAGGTTTTAATCC  >  NC_000913/2437159‑2437436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.