New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1432951NA (NA)7 (0.170) 7/276 1.8 NA coding (541/576 nt) tfaR Rac prophage; putative tail fiber assembly protein TfaR
?NC_000913 = 1433168 NA (NA)coding (507/591 nt) pinR Rac prophage; putative site‑specific recombinase

ATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATTGCAACGGAGGAAGAAATCTCGTTGCTGGAAGCATGGAAAAAGTATCGGGTATTGCTGAACCGTGTTGATACGTCAACTGCACAGGATATTGAATGGCCAGCACTGCCGTAGGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTT  >  NC_000913/1432838‑1433084
                                                                                                                 |                                                                                                                                     
atgttGCGCCGCTTCAGGATGCTGCAGATTTGGAAATGGCAAAGGAGGAAGAAATGTCGTTGATGAAAGCAGGGAAAATTCGTCGGGTAGTGCTGATCGTGGTTAATACGTCAACTTAAAAGGATTTTGAATGGTCAGcg                                                                                                             <  2:56458/137‑2 (MQ=0)
                                                                                                           acatCAACTGCACAGGATATTGAATGGCCAGCACTGCCGTAGGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTAttttt  <  1:365292/137‑1 (MQ=1)
                                                                                                                 |                                                                                                                                     
ATATTGCGCCGCTTCAGGATGCTGCAGATCTGGAAATTGCAACGGAGGAAGAAATCTCGTTGCTGGAAGCATGGAAAAAGTATCGGGTATTGCTGAACCGTGTTGATACGTCAACTGCACAGGATATTGAATGGCCAGCACTGCCGTAGGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTT  >  NC_000913/1432838‑1433084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.