Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,600,426 C→T A272A (GCG→GCA lsrR ← DNA‑binding transcriptional repressor LsrR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,600,4260CT99.9% 3338.0 / NA 929A272A (GCG→GCAlsrRDNA‑binding transcriptional repressor LsrR
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base T (443/485);  total (444/485)
Fisher's exact test for biased strand distribution p-value = 4.78e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 938 total aligned reads displayed.

ACTACGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGCGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCTGA  >  NC_000913/1600291‑1600562
                                                                                                                                       |                                                                                                                                        
 cTACGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCt                                                                                                                                     <  2:555211/140‑1 (MQ=255)
    cGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTaa                                                                                                                                  >  1:14267/1‑140 (MQ=255)
        aaaTCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGt                                                                                                                              <  2:513372/140‑1 (MQ=255)
        aaaTCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGt                                                                                                                              <  1:2611/140‑1 (MQ=255)
              ccgcTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGTACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCa                                                                                                                        >  1:397360/1‑140 (MQ=255)
                 ctgctgTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATc                                                                                                                     <  1:130369/140‑1 (MQ=255)
                 ctgctgTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATc                                                                                                                     <  1:173636/140‑1 (MQ=255)
                 ctgctgTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATc                                                                                                                     <  2:627570/140‑1 (MQ=255)
                  tgctgTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCa                                                                                                                    <  1:433802/140‑1 (MQ=255)
                    ctgTGTCTTGAGCGGTACCCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGt                                                                                                                  <  2:155223/140‑1 (MQ=255)
                    ctgTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGt                                                                                                                  <  2:588666/140‑1 (MQ=255)
                    ctgTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGt                                                                                                                  <  1:496739/140‑1 (MQ=255)
                    ctgTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGt                                                                                                                  <  1:521655/140‑1 (MQ=255)
                            tGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGtt                                                                                                             <  2:490687/137‑1 (MQ=255)
                            tGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGtt                                                                                                             >  1:490687/1‑137 (MQ=255)
                              aTCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTa                                                                                                        >  2:402741/1‑140 (MQ=255)
                              aTCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTa                                                                                                        >  2:465314/1‑140 (MQ=255)
                              aTCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTa                                                                                                        >  2:144627/1‑140 (MQ=255)
                              aTCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTa                                                                                                        >  2:109462/1‑140 (MQ=255)
                                  gTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAAt                                                                                                                      >  2:442396/1‑122 (MQ=255)
                                   tAACCAGTGCGTTGATATAACTGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTg                                                                                                   <  2:257156/140‑1 (MQ=255)
                                   tAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGtt                                                                                                             <  2:535780/130‑1 (MQ=255)
                                   tAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTAt                                                                                                           >  1:220019/1‑132 (MQ=255)
                                   tAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTg                                                                                                   >  2:243669/1‑140 (MQ=255)
                                   tAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTg                                                                                                   <  2:455191/140‑1 (MQ=255)
                                   tAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTg                                                                                                   >  1:630793/1‑140 (MQ=255)
                                   tAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTg                                                                                                   >  2:310901/1‑140 (MQ=255)
                                   tAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTg                                                                                                   <  2:86299/140‑1 (MQ=255)
                                   tAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTg                                                                                                   <  2:57962/140‑1 (MQ=255)
                                     aCCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGat                                                                                                 >  1:331466/1‑140 (MQ=255)
                                      ccAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGata                                                                                                <  2:347975/140‑1 (MQ=255)
                                       cAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGatat                                                                                               <  2:566063/140‑1 (MQ=255)
                                        ggtggtttGATTTAACCGCCTTTCATTGCAGCGGGAATTGCTTCGTCTTTATTTTCTCCCCCGGCCACGCCATCCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATAtt                                                                                              <  2:167956/134‑1 (MQ=255)
                                          tGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTTAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCg                                                                                            >  1:530128/1‑140 (MQ=255)
                                          tGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCg                                                                                            >  1:37882/1‑140 (MQ=255)
                                          tGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCg                                                                                            >  2:212677/1‑140 (MQ=255)
                                          tGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCg                                                                                            >  1:362358/1‑140 (MQ=255)
                                          tGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCg                                                                                            >  1:466640/1‑140 (MQ=255)
                                           gCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGt                                                                                           >  2:284133/1‑140 (MQ=255)
                                            cGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTg                                                                                          >  1:606818/1‑140 (MQ=255)
                                             gTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGa                                                                                         <  2:7553/140‑1 (MQ=255)
                                                 atatAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTg                                                                                                   >  1:59646/1‑126 (MQ=255)
                                                 atatAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAAc                                                                                     >  2:527270/1‑140 (MQ=255)
                                                 atatAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAAc                                                                                     >  1:120416/1‑140 (MQ=255)
                                                    taACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTc                                                                                  <  1:571156/140‑1 (MQ=255)
                                                         gCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCtt                                                                             <  2:337183/140‑1 (MQ=255)
                                                           cTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCtttt                                                                           >  1:343299/1‑140 (MQ=255)
                                                           cTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCtttt                                                                           >  2:654322/1‑140 (MQ=255)
                                                           cTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCtttt                                                                           >  2:36785/1‑140 (MQ=255)
                                                           cTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCtttt                                                                           >  2:397547/1‑140 (MQ=255)
                                                           cTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGCCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCtttt                                                                           >  1:421830/1‑140 (MQ=255)
                                                              tCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCa                                                                        >  2:501862/1‑140 (MQ=255)
                                                                       cGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAg                                                               <  1:541472/140‑1 (MQ=255)
                                                                                 ttCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTaaaa                                                     >  2:204957/1‑140 (MQ=255)
                                                                                     gCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAg                                                               >  2:610678/1‑126 (MQ=255)
                                                                                     gCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTc                                                 <  1:94756/140‑1 (MQ=255)
                                                                                      cTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCg                                                <  1:460348/140‑1 (MQ=255)
                                                                                          aTTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCaa                                            <  1:85696/140‑1 (MQ=255)
                                                                                              tctcCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAGGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGc                                        <  1:189457/140‑1 (MQ=255)
                                                                                              tctcCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCGCCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGc                                        <  2:434625/140‑1 (MQ=255)
                                                                                                tcCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGccc                                      >  1:204667/1‑140 (MQ=255)
                                                                                                   cccTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCtt                                   >  1:514589/1‑140 (MQ=255)
                                                                                                    ccTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCttt                                  <  1:616105/140‑1 (MQ=255)
                                                                                                     cTGCCACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCtttt                                 >  2:599561/1‑140 (MQ=255)
                                                                                                        ccACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCgg                              >  2:38299/1‑140 (MQ=255)
                                                                                                         cACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGc                             <  1:4060/140‑1 (MQ=255)
                                                                                                         cACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGc                             <  1:440360/140‑1 (MQ=255)
                                                                                                         cACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGc                             <  1:354739/140‑1 (MQ=255)
                                                                                                         cACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGc                             <  1:584486/140‑1 (MQ=255)
                                                                                                         cACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGc                             <  1:654322/140‑1 (MQ=255)
                                                                                                         cACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGc                             <  2:641252/140‑1 (MQ=255)
                                                                                                         cACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGc                             <  2:228213/140‑1 (MQ=255)
                                                                                                         cACGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGc                             <  2:666769/140‑1 (MQ=255)
                                                                                                          aCGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGcc                            >  1:452175/1‑140 (MQ=255)
                                                                                                           cGCCAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCa                           <  2:355483/140‑1 (MQ=255)
                                                                                                             ccAACCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAAt                         <  1:248897/140‑1 (MQ=255)
                                                                                                                aCCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCAt                      >  2:547795/1‑140 (MQ=255)
                                                                                                                aCCCGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCAt                      >  2:416502/1‑140 (MQ=255)
                                                                                                                 cccGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCAtt                     >  1:165080/1‑140 (MQ=255)
                                                                                                                 cccGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCAtt                     <  1:475890/140‑1 (MQ=255)
                                                                                                                  ccGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCTTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATAAAAAAAGTAGCCTAAAATGTCGCCAGCCGCCCCTTTTCGGCCAATCATTa                    <  1:319529/140‑1 (MQ=255)
                                                                                                                  ccGGACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTa                    <  2:130863/140‑1 (MQ=255)
                                                                                                                     gACGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGc                             >  1:641009/1‑128 (MQ=255)
                                                                                                                      aCGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTg                >  1:148413/1‑140 (MQ=255)
                                                                                                                      aCGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTg                >  2:320436/1‑140 (MQ=255)
                                                                                                                      aCGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGCATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTg                >  1:315974/1‑140 (MQ=255)
                                                                                                                       cGGGTATGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGt               <  1:306833/140‑1 (MQ=255)
                                                                                                                            aTGGTTTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAGAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGcc          <  2:331466/140‑1 (MQ=255)
                                                                                                                            aTGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGcc          <  1:559643/140‑1 (MQ=255)
                                                                                                                            aTGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGcc          <  1:111350/140‑1 (MQ=255)
                                                                                                                            aTGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGcc          <  2:190034/140‑1 (MQ=255)
                                                                                                                            aTGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGcc          <  1:68034/140‑1 (MQ=255)
                                                                                                                             tGGTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGccc         <  1:100528/140‑1 (MQ=255)
                                                                                                                               gTCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTg       <  1:74327/140‑1 (MQ=255)
                                                                                                                                tCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTgg      <  2:301260/140‑1 (MQ=255)
                                                                                                                                tCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTgg      <  2:120289/140‑1 (MQ=255)
                                                                                                                                tCTTCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTgg      <  1:27604/140‑1 (MQ=255)
                                                                                                                                  ttCAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTCTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCt    >  1:231848/1‑140 (MQ=255)
                                                                                                                                    cAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGcc          <  2:476977/132‑1 (MQ=255)
                                                                                                                                    cAGTGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCTGa  <  1:286823/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
ACTACGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCGGACGGGTATGGTCTTCAGCGCGCTTAAAGGTAAGCCAATCAGTTCGTTATGTATTTTGATATTCGTGACAACGTCACCTTTTGCATCAAAAAAGTAGCCTAAAATGTCGCCAACCGCCCCTTTTCGGCCAATCATTAACTGTTCGCCCTGGCTGA  >  NC_000913/1600291‑1600562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: