Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	729,659	0	T	G	24.2%	128.1 / 15.2	62	V26G (GTA→GGA)	rhsC	rhs element protein RhsC
Reads supporting (aligned to +/- strand):  ref base T (13/34);  new base G (15/0);  total (28/34)
Fisher's exact test for biased strand distribution p-value = 4.02e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

CTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCT  >  NC_000913/729528‑729791                                                                                                                                    |                                                                                                                                     cTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGGACGCATCg                                                                                                                              >  2:1042627/1‑140 (MQ=255) cTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAGCCGGGGTACGCATCg                                                                                                                              >  2:334637/1‑140 (MQ=255)   gTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGt                                                                                                                            >  1:485001/1‑140 (MQ=255)   gTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGGACGCATCGGt                                                                                                                            >  2:201749/1‑140 (MQ=255)    tAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTg                                                                                                                           >  2:893799/1‑140 (MQ=255)     aGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGc                                                                                                                          >  1:135611/1‑140 (MQ=255)     aGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGc                                                                                                                          <  1:1042627/140‑1 (MQ=255)         tttCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGccccc                                                                                                                      >  1:966795/1‑140 (MQ=255)         tttCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAACATTGTCCCGGGTTCAGCCGGGGTACGCATCGGTGccccc                                                                                                                      >  2:49889/1‑140 (MQ=255)          ttCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTATGCATCGGTGCCCCCa                                                                                                                     <  2:1104447/140‑1 (MQ=255)          ttCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCa                                                                                                                     <  1:717631/140‑1 (MQ=255)          ttCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCa                                                                                                                     <  2:1035736/140‑1 (MQ=255)          ttCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCa                                                                                                                     <  1:334637/140‑1 (MQ=255)          ttCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCa                                                                                                                     <  1:949098/140‑1 (MQ=255)          ttCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAGCCGGGGGACGCATCGGTGcccccc                                                                                                                     >  2:773671/1‑139 (MQ=255)           tCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCAc                                                                                                                    >  1:712282/1‑140 (MQ=255)           tCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCAc                                                                                                                    >  1:232893/1‑140 (MQ=255)           tCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAGCCGGGGGACGCATCGGGGCCCCCAc                                                                                                                    >  2:1058448/1‑140 (MQ=255)           tCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAGCCCGGGGACGCATCGGTGCCCCCAc                                                                                                                    >  2:608219/1‑140 (MQ=255)              ccTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCCGTGCCCCCACCgg                                                                                                                 >  1:466344/1‑140 (MQ=255)              ccTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAGCCGGGGGACGCATCGGTGGCCCCACCgg                                                                                                                 >  2:1092611/1‑140 (MQ=255)              ccTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAACCGGGGGACGCATCGGTGCCCCCCCCgg                                                                                                                 >  2:1246413/1‑140 (MQ=255)               cTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGc                                                                                                                <  1:893799/140‑1 (MQ=255)               cTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGc                                                                                                                <  2:232893/140‑1 (MQ=255)               cTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGc                                                                                                                <  2:82712/140‑1 (MQ=255)                  tCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAGCCGGGGGACGCATCGGGGCCCCCCCCGGCGTg                                                                                                             >  2:1231275/1‑140 (MQ=255)                       agACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTg                                                                                                        <  2:181479/140‑1 (MQ=255)                         aCAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGtt                                                                                                      <  1:1058448/140‑1 (MQ=255)                         aCAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGtt                                                                                                      <  1:1231275/140‑1 (MQ=255)                            aaTAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAGCCGGGGGACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCgg                                                                                                   >  1:252826/1‑140 (MQ=255)                                aCCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGtgtg                                                                                               >  2:483538/1‑140 (MQ=255)                                aCCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGGACGCATCGGGGCCCCCACCGGCGTGGCCTGTTCGGggtg                                                                                               >  1:281909/1‑140 (MQ=255)                                aCCCGATAAAACAAGGATGAGCAGATGAGCAGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAGCCGGGGGACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGtgtg                                                                                               >  1:466780/1‑140 (MQ=255)                                   cGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAGCCGGGGGACGCATCGGTGCCCCCCCCGGCGTGGCCTGGTCGGGGGGccc                                                                                            >  2:153968/1‑140 (MQ=17)                                     aTAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGGACGCATCGGTGCCCCCACCGGCGTGGGCCGTTCGGTGTGCCCcg                                                                                          >  2:526284/1‑140 (MQ=255)                                               gATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGAc                                                                                <  1:526284/140‑1 (MQ=255)                                                aTGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCTGCCGGGGGACGCGTCGGGGCCCCCACCGGCGGGGCCTGGTCGGTGTGGCCCGGCGGGGGGAcc                                                                               >  2:491528/1‑139 (MQ=14)                                                    gCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCg                                                                           <  1:541779/140‑1 (MQ=255)                                                    gCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCg                                                                           <  1:338663/140‑1 (MQ=255)                                                    gCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTTAGCCGGGGTACGCATCGGTGCCCCCACCCGCGGGGGCCGGTCGGTGTGCCCCGGGGGGGGgccggccg                                                                           >  2:323313/1‑140 (MQ=14)                                                        aTGAGCGGAAATCCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAGCCGGGGTACGCATCGGGGCCCCCACCGGCGTGGCCCGTTCGGTGTGCCCCGGCGGGGGGGCGGCCgggcc                                                                       >  2:1017029/1‑137 (MQ=14)                                                        aTGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCa                                                                       <  2:1118135/140‑1 (MQ=255)                                                         tGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGGACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCAt                                                                      >  1:1226234/1‑140 (MQ=255)                                                                   aCCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATc                                                            <  2:966795/140‑1 (MQ=255)                                                                     cggcggCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCg                                                          >  1:122319/1‑140 (MQ=255)                                                                          gcgcGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCgctgct                                                     <  2:1226234/140‑1 (MQ=255)                                                                          gcgcGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCgctgct                                                     <  2:135611/140‑1 (MQ=255)                                                                          gcgcGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCgctgct                                                     <  1:550278/140‑1 (MQ=255)                                                                          gcgcGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCgctgct                                                     <  1:491528/140‑1 (MQ=255)                                                                          gcgcGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCgctgct                                                     <  1:201749/140‑1 (MQ=255)                                                                          gcgcGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGGTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGGGGCCTGTTTGGGGTGCCCCGGCGGGGGGGCGGCCGGCCACCCCGGCCATCCcctgcc                                                     >  2:597247/1‑139 (MQ=11)                                                                                      gACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGCTGCTCGGTGCAAAGGt                                         <  1:1092611/140‑1 (MQ=255)                                                                                          tGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGGACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGCTGCTCGGTGCAAAGGTCCtt                                     >  1:417428/1‑140 (MQ=255)                                                                                              gCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGCTGCTCGGTGCAAAGGTCCTTCCCg                                 <  2:81736/140‑1 (MQ=255)                                                                                              gCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGCTGCTCGGTGCAAAGGTCCTTCCCg                                 <  1:337829/140‑1 (MQ=255)                                                                                                aGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGCTGCTCGGTGCAAAGGTCCTTCCCGGt                               <  2:485001/140‑1 (MQ=255)                                                                                                     ggCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAAc                          <  1:1221782/140‑1 (MQ=255)                                                                                                     ggCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCAACGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAAc                          <  1:323313/140‑1 (MQ=255)                                                                                                       cGGTAGCATTGTCCAGGGTTCAGCCGGGGGACGCATCGGTGCCCCCACCGGCGTGGGCTGTTCGGGGTGCCCCGGCGGGGGGACGTCCCGCCATCCGGGCAATCCGCTGCTCGGGGCAAAGGGCCTTCCCGGGGGAAccc                        >  2:861580/1‑139 (MQ=255)                                                                                                       cGGTAGCATTGTCCAGGGGTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGGGGCGTCCGGCCCTCCGGGCAATCCGCTGCTCCGGGCAAAGGGCCCTCCCCGGGGAAccc                        >  2:465368/1‑139 (MQ=14)                                                                                                       cGGTAGCATTGTCCAGGGGTCAGCCGGGGGACGCATCGGTGCCCCCCCCGGCGTGGCCTGTTCGGTGTGCCCCCGCGGGGGGGCTGCCGGCCACCCGGTCAATCCCCTGCTCGGTGCAAAGGGCCTTCCCCGTGGAAccc                        >  2:180479/1‑139 (MQ=11)                                                                                                          tAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCCCCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGGGACGTCCCGCCATCCCGGCAATCCCCTGCTCGGGGGAAAGGGCCTTCCCCGGGAAAACGACa                     >  2:496810/1‑140 (MQ=11)                                                                                                          tAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACa                     <  1:483538/140‑1 (MQ=255)                                                                                                               ttGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGcc                <  1:153968/140‑1 (MQ=255)                                                                                                                   ccAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGCTGCTCGGCGCAAAGGGCCTTCCCGGTGAAACCGACATCGCCCTgc            >  1:947307/1‑140 (MQ=255)                                                                                                                    cggggTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTgcc           <  1:58388/138‑1 (MQ=255)                                                                                                                      gggTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTgcccg         <  1:465368/140‑1 (MQ=40)                                                                                                                      gggTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTgcccg         <  1:861580/140‑1 (MQ=40)                                                                                                                            aGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCTGGCCAACCGGTCCATCCGCTGCTCGGGGCAAAGGTCCTTCCCGGGGAAACCTACATAGCCCTGCCCGGCCCGc   >  2:1097748/1‑140 (MQ=14)                                                                                                                            aGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCTTGCCCGGCCCGc   >  2:1195553/1‑140 (MQ=255)                                                                                                                            aGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGc   >  2:40900/1‑140 (MQ=40)                                                                                                                            aGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGc   >  1:877097/1‑140 (MQ=40)                                                                                                                             gCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCt  <  2:877097/140‑1 (MQ=40)                                                                                                                                    |                                                                                                                                     CTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGCAGATGAGCGGAAAACCGGCGGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTCCAGGGTTCAGCCGGGGTACGCATCGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCGCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCT  >  NC_000913/729528‑729791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑