Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG33.0% 159.6 / 15.7 94T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (20/43);  new base G (31/0);  total (51/43)
Fisher's exact test for biased strand distribution p-value = 1.19e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 102 total aligned reads displayed.

CAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAC  >  NC_000913/4568366‑4568643
                                                                                                                                          |                                                                                                                                             
cagGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTa                                                                                                                                              >  1:335692/1‑140 (MQ=255)
   gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaa                                                                                                                                           >  1:1305648/1‑140 (MQ=255)
      ccAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaaaa                                                                                                                                        <  2:795452/140‑1 (MQ=255)
       cAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaaaaa                                                                                                                                       >  2:1340422/1‑139 (MQ=255)
          aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                    <  1:676492/140‑1 (MQ=255)
          aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                    <  2:835584/140‑1 (MQ=255)
          aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                    <  1:884249/140‑1 (MQ=255)
          aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                    <  1:650701/140‑1 (MQ=255)
              aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGTGAAAAAAAAGAGGCaa                                                                                                                                >  2:1047533/1‑139 (MQ=255)
              aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAt                                                                                                                                >  1:124389/1‑140 (MQ=255)
              aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCaa                                                                                                                                >  1:1259962/1‑139 (MQ=255)
              aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCaa                                                                                                                                >  2:204871/1‑139 (MQ=255)
               cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATa                                                                                                                               >  1:754732/1‑140 (MQ=255)
                aTCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaa                                                                                                                              >  1:20225/1‑140 (MQ=255)
                  cGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaaca                                                                                                                            <  1:204871/140‑1 (MQ=255)
                    gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACTGGCATaacaaa                                                                                                                          >  2:1079131/1‑140 (MQ=255)
                        tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAaaaaaaaaa                                                                                                                      >  2:252777/1‑139 (MQ=255)
                           aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                   <  1:1236810/140‑1 (MQ=255)
                              cACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCAAAACAAAAAAATCCttt                                                                                                                >  2:711760/1‑139 (MQ=255)
                                cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAACAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGCGGCATAACAAAAAAATCCCTGTc                                                                                                              >  2:46530/1‑140 (MQ=255)
                                  tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCg                                                                                                            <  2:1305648/140‑1 (MQ=255)
                                  tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCg                                                                                                            >  1:1367027/1‑140 (MQ=255)
                                  tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCg                                                                                                            <  2:335692/140‑1 (MQ=255)
                                               aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCCCTGTCCGGA‑G‑AACCCCAACg                                                                                             >  1:1356217/1‑140 (MQ=255)
                                               aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAACAACACCCTGTTCCGA‑G‑AACCCCAACg                                                                                             >  1:1237149/1‑140 (MQ=255)
                                                 cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AAACCCAACggg                                                                                           >  1:1159769/1‑140 (MQ=255)
                                                 cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAAAAACACCCTTTCCGGG‑G‑AAACCCCACcgg                                                                                           >  2:1347824/1‑140 (MQ=255)
                                                 cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACACCATCGGGAAAAACAGCGTGGCGGCATGGCGGGCAAAAAAAAGTGGCCTAACAAACAAATCCTTGTCCCGA‑G‑AACCCCCACggg                                                                                           >  1:222148/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACgggg                                                                                          >  1:16770/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACgggg                                                                                          >  1:482357/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAAAAACCCCTTGTCCGGA‑G‑AACCCCAACgggg                                                                                          >  2:443950/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAACAACTCCTTGTCCGGG‑G‑AACCCCCACgggg                                                                                          >  1:91442/1‑140 (MQ=255)
                                                    aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAATGGGAGAAAAAAAAAAACCCTGTCCGGA‑G‑AAACCCAACAGGGaa                                                                                        >  2:658231/1‑140 (MQ=255)
                                                      gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGaaaa                                                                                      <  1:769765/140‑1 (MQ=255)
                                                      gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGaaaa                                                                                      >  1:657431/1‑140 (MQ=255)
                                                        tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACg                                                                                    <  2:959849/140‑1 (MQ=255)
                                                        tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACg                                                                                    <  1:555358/140‑1 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGGATAACAAAAAACTCCTTTTCCGGA‑G‑AACCCCAACGGGGAAAAAGaa                                                                                  >  1:591185/1‑140 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGaa                                                                                  <  2:234511/140‑1 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACCCCTTGTCCGGG‑G‑AACCCCAACGGGGGAAAAGaa                                                                                  >  2:289916/1‑140 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGAGGCATAAAAAAAAACTCCTTTTCCCGA‑G‑AACCCCAACGGGGAAAAAGaa                                                                                  >  2:660411/1‑140 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGA‑G‑AAACCCAACGGGGGAAAAGaa                                                                                  >  2:1336873/1‑140 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGGATAAAAAACAACCCCCTTTCCCGA‑G‑AAACCCAACGGGGGAAAAGaa                                                                                  >  2:1006603/1‑140 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGGAAAAAAAAAAAACCCTTGTCCGGG‑G‑AAACCCCACGGGGGAAACGaa                                                                                  >  2:565485/1‑140 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAAAAAAAAAATCCCTGTCCCGA‑G‑AACCCCAACGGGGGAAAAGaa                                                                                  >  2:1202629/1‑140 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGaaa                                                                                 >  1:198992/1‑140 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGCGGCATAACAAAAAACACCCTTTCCGGG‑G‑AACCCCAACGGGGAAAACGaaa                                                                                 >  2:741595/1‑140 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGCGGGATAAAAAACAAAACCTTGTCCGGG‑G‑AACCCCCCAGGGGGAAACGaaa                                                                                 >  1:318749/1‑140 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGGATAACAAAAAACCCCTTTTCCCGA‑G‑AACCCCCACGGGGGAAAAGaaa                                                                                 >  2:297089/1‑140 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAAAAACTCCTTTTCCGGA‑G‑AACCCCAACGGGGGAAACGaaa                                                                                 >  1:946690/1‑140 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAAAAACTCCTTTTCCGGA‑G‑AAACCCAACGGGGAAAACGaaa                                                                                 >  1:173087/1‑140 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAAAAACCCCTTTTCCGGA‑G‑AACCCCAACGGGGGAAAAGaaa                                                                                 >  1:627853/1‑140 (MQ=255)
                                                               gATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAACAACTCCTTGTCCGGA‑G‑AAACCCCACGGGGGAAAAGAAAttta                                                                             >  1:956209/1‑138 (MQ=255)
                                                                aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGTGAAAAAAAACAGGGGTAACAAAAAACTCCTTGTCCGGA‑G‑AAACCCAACCGGGGAAACGAAAATCaa                                                                            >  2:737812/1‑140 (MQ=255)
                                                                aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCaa                                                                            <  1:954085/140‑1 (MQ=255)
                                                                aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGGAAACGAAAATCaa                                                                            >  2:124144/1‑140 (MQ=255)
                                                                aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAAAAAACAACCCCTTGTCCGGG‑G‑AACCCCAACGGGGAAAAAAAAAATCaa                                                                            >  2:198475/1‑140 (MQ=255)
                                                                  ccGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATa                                                                          <  1:1340422/140‑1 (MQ=255)
                                                                    gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATAcc                                                                        <  2:198992/140‑1 (MQ=255)
                                                                    gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCTTTTCCGGA‑G‑AACCCCCACGGGGGAAAAGAAAATCAATaac                                                                        >  2:181551/1‑138 (MQ=255)
                                                                    gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGCAAAAAAAAAAATGCCAAAAAAAAAAAACCTTTTCCGTA‑G‑AACCCCAACGGGGGAAAAGAAAATAAAAAcc                                                                        >  2:201028/1‑140 (MQ=255)
                                                                     tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAAAAAAAAAATCCTTGTCCGGA‑G‑AACCCCAACGGGGGAAAAGAAAATTAATaacc                                                                       >  2:1355835/1‑137 (MQ=255)
                                                                        aCAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAAAAACTCCTTGTCCGGG‑G‑AACCCCAACGGGGGAAAAGAAATTCAATAACGTCg                                                                    >  2:954085/1‑140 (MQ=255)
                                                                          aGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGGAAAAAAAGTGGCATAACAAACAAATCCCTGTCCGGG‑G‑AACCCCAACGGGGGAAAAGAAATTTAAAACCGTCggg                                                                  >  2:235386/1‑139 (MQ=255)
                                                                                 cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg                                                           <  1:1371181/140‑1 (MQ=255)
                                                                                    caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                        <  2:20225/140‑1 (MQ=255)
                                                                                    caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                        <  1:687448/140‑1 (MQ=255)
                                                                                      aaGTTATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                      <  1:97167/140‑1 (MQ=255)
                                                                                      aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                      <  1:1355835/140‑1 (MQ=255)
                                                                                      aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAACAAACCCCTTTCCGGG‑GAAACCCCAACGGGGAAAAC‑AAAATCAAAACCCTCCGGAATGACGaaaag                                                      >  2:674270/1‑138 (MQ=255)
                                                                                        gTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCa                                                    <  2:16770/140‑1 (MQ=255)
                                                                                             aCAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTga                                               <  2:1013300/140‑1 (MQ=255)
                                                                                              cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag                                              <  1:936366/140‑1 (MQ=255)
                                                                                               aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGTAGGTgaga                                             <  2:392971/140‑1 (MQ=255)
                                                                                               aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                             <  1:1336873/140‑1 (MQ=255)
                                                                                                 aaTCAACGCCATCGGGAAATACAGCGTGGCGGCAAGGCGGGCAAAAAAACAACGTTTTAAAAAAAAATTCCTGTGCGGAGG‑AAACCGAAAGGGG‑AAACTAAATTCAATAACTACGGCTATCAACAAACGCAGGTGAGaaa                                           >  2:1140689/1‑139 (MQ=255)
                                                                                                   tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCCTTGTCCGGG‑G‑AACCCCAACGGGGGAAAAGAAAATCAATAACCTCGGGAATGACGAAAAGCAGGGGAGAAggg                                         >  2:740546/1‑140 (MQ=255)
                                                                                                   tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGGCTAAAAAAAAAAACCCTCTCCGGA‑G‑AACCCCCACCGGGGAAACAAAATTCAATAACCTCCGGAATGACCGAAAGCAGGGGAGAAagg                                         >  2:914754/1‑140 (MQ=255)
                                                                                                         ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                   <  1:297089/140‑1 (MQ=255)
                                                                                                         ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                   <  2:124389/140‑1 (MQ=255)
                                                                                                          cATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACgag                                  <  2:657431/140‑1 (MQ=255)
                                                                                                           aTCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAAAAAAACCTTGTCCGGA‑G‑GACCCCCACGGGGAAAACGAAAATTAATACCGTCGGGAATGACGAAAAGCAGGGGGGAAGGGGAAAgaga                                 >  2:451748/1‑140 (MQ=255)
                                                                                                            tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                                <  1:1079131/140‑1 (MQ=255)
                                                                                                            tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                                <  2:627853/140‑1 (MQ=255)
                                                                                                              gggAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTg                              <  2:956209/140‑1 (MQ=255)
                                                                                                              gggAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTg                              <  2:754732/140‑1 (MQ=255)
                                                                                                                 aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                           <  2:1367027/140‑1 (MQ=255)
                                                                                                                 aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                           <  1:1202629/140‑1 (MQ=255)
                                                                                                                 aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                           <  1:1347824/140‑1 (MQ=255)
                                                                                                                   aaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAAt                         <  1:565485/140‑1 (MQ=255)
                                                                                                                       aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                     <  1:1006603/140‑1 (MQ=255)
                                                                                                                           tGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAAAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGGAAAAGAAAATCAATACCCTCGGGAATGACGAAAAGCAGGGGGGAAAGGGAAAGAGACTGCAAATGTACTGaa                 >  2:80643/1‑140 (MQ=255)
                                                                                                                              cggcATGGCGGGGAAAAAAACGTGGGATAACAAAAAAACCCTTTTCCGGA‑G‑AACCCCAACGGGGGAAAAGAAAATCAATACCGTCGGTGATGACGAAAAGCAGGGGGGAAGGGGAACGAGGCTGCAAATGGACTGAAttt              >  2:954958/1‑140 (MQ=255)
                                                                                                                              cggcATGGCGGGGAAAAAAAAGTGGGATAAAAAACAACCCCCTTTCCGGA‑G‑AACCCCCACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAAttt              >  2:779679/1‑140 (MQ=255)
                                                                                                                                 cATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCAt           <  1:674270/140‑1 (MQ=255)
                                                                                                                                  aTGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg          <  1:658231/140‑1 (MQ=255)
                                                                                                                                    ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa        <  1:198475/140‑1 (MQ=255)
                                                                                                                                    ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa        <  2:482357/140‑1 (MQ=255)
                                                                                                                                    ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa        <  2:591185/140‑1 (MQ=255)
                                                                                                                                          tAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAc  <  2:1356217/140‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                             
CAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑G‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAC  >  NC_000913/4568366‑4568643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑