Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5120CA20.0% 187.9 / 18.3 65R3L (CGT→CTT) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base C (7/45);  new base A (13/0);  total (20/45)
Fisher's exact test for biased strand distribution p-value = 4.72e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01
Rejected as consensus: Frequency below/above cutoff threshold.

ACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACA  >  NC_000913/4568376‑4568647
                                                                                                                                        |                                                                                                                                         
aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                        <  1:884249/140‑1 (MQ=255)
aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                        <  2:835584/140‑1 (MQ=255)
aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                        <  1:650701/140‑1 (MQ=255)
aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                        <  1:676492/140‑1 (MQ=255)
    aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGTGAAAAAAAAGAGGCaa                                                                                                                                    >  2:1047533/1‑139 (MQ=255)
    aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAt                                                                                                                                    >  1:124389/1‑140 (MQ=255)
    aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCaa                                                                                                                                    >  1:1259962/1‑139 (MQ=255)
    aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCaa                                                                                                                                    >  2:204871/1‑139 (MQ=255)
     cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATa                                                                                                                                   >  1:754732/1‑140 (MQ=255)
      aTCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaa                                                                                                                                  >  1:20225/1‑140 (MQ=255)
        cGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaaca                                                                                                                                <  1:204871/140‑1 (MQ=255)
          gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACTGGCATaacaaa                                                                                                                              >  2:1079131/1‑140 (MQ=255)
              tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAaaaaaaaaa                                                                                                                          >  2:252777/1‑139 (MQ=255)
                 aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                       <  1:1236810/140‑1 (MQ=255)
                    cACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCAAAACAAAAAAATCCttt                                                                                                                    >  2:711760/1‑139 (MQ=255)
                      cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAACAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGCGGCATAACAAAAAAATCCCTGTc                                                                                                                  >  2:46530/1‑140 (MQ=255)
                        tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCg                                                                                                                >  1:1367027/1‑140 (MQ=255)
                        tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCg                                                                                                                <  2:335692/140‑1 (MQ=255)
                        tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCg                                                                                                                <  2:1305648/140‑1 (MQ=255)
                                     aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCCCTGTCCGGAGAACCCCAACg                                                                                                 >  1:1356217/1‑140 (MQ=255)
                                     aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAACAACACCCTGTTCCGAGAACCCCAACg                                                                                                 >  1:1237149/1‑140 (MQ=255)
                                       cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTTATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACATGGCATAAAAAACAAAACCTTGTCCGGGGAAACCCAACggg                                                                                               >  2:97167/1‑140 (MQ=255)
                                       cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAAACCCAACggg                                                                                               >  1:1159769/1‑140 (MQ=255)
                                       cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAAAAACACCCTTTCCGGGGAAACCCCACcgg                                                                                               >  2:1347824/1‑140 (MQ=255)
                                       cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACACCATCGGGAAAAACAGCGTGGCGGCATGGCGGGCAAAAAAAAGTGGCCTAACAAACAAATCCTTGTCCCGAGAACCCCCACggg                                                                                               >  1:222148/1‑140 (MQ=255)
                                        ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACgggg                                                                                              >  1:16770/1‑140 (MQ=255)
                                        ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACgggg                                                                                              >  1:482357/1‑140 (MQ=255)
                                        ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAAAAACCCCTTGTCCGGAGAACCCCAACgggg                                                                                              >  2:443950/1‑140 (MQ=255)
                                        ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAACAACTCCTTGTCCGGGGAACCCCCACgggg                                                                                              >  1:91442/1‑140 (MQ=255)
                                          aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAATGGGAGAAAAAAAAAAACCCTGTCCGGAGAAACCCAACAGGGaa                                                                                            >  2:658231/1‑140 (MQ=255)
                                            gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGaaaa                                                                                          <  1:769765/140‑1 (MQ=255)
                                            gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGaaaa                                                                                          >  1:657431/1‑140 (MQ=255)
                                            gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCAAAAAAAAAAAACCCTTTTCCGGGGAACCCCAACGGGGgaaa                                                                                          >  2:1098076/1‑140 (MQ=255)
                                              tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg                                                                                        <  2:959849/140‑1 (MQ=255)
                                              tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg                                                                                        <  1:555358/140‑1 (MQ=255)
                                                gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGGATAACAAAAAACTCCTTTTCCGGAGAACCCCAACGGGGAAAAAGaa                                                                                      >  1:591185/1‑140 (MQ=255)
                                                gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGaa                                                                                      <  2:234511/140‑1 (MQ=255)
                                                gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACCCCTTGTCCGGGGAACCCCAACGGGGGAAAAGaa                                                                                      >  2:289916/1‑140 (MQ=255)
                                                gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGAGGCATAAAAAAAAACTCCTTTTCCCGAGAACCCCAACGGGGAAAAAGaa                                                                                      >  2:660411/1‑140 (MQ=255)
                                                gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGAGAAACCCAACGGGGGAAAAGaa                                                                                      >  2:1336873/1‑140 (MQ=255)
                                                gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGGATAAAAAACAACCCCCTTTCCCGAGAAACCCAACGGGGGAAAAGaa                                                                                      >  2:1006603/1‑140 (MQ=255)
                                                gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGGAAAAAAAAAAAACCCTTGTCCGGGGAAACCCCACGGGGGAAACGaa                                                                                      >  2:565485/1‑140 (MQ=255)
                                                gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAAAAAAAAAATCCCTGTCCCGAGAACCCCAACGGGGGAAAAGaa                                                                                      >  2:1202629/1‑140 (MQ=255)
                                                 aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGaaa                                                                                     >  1:198992/1‑140 (MQ=255)
                                                 aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGCGGCATAACAAAAAACACCCTTTCCGGGGAACCCCAACGGGGAAAACGaaa                                                                                     >  2:741595/1‑140 (MQ=255)
                                                 aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGCGGGATAAAAAACAAAACCTTGTCCGGGGAACCCCCCAGGGGGAAACGaaa                                                                                     >  1:318749/1‑140 (MQ=255)
                                                 aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGGATAACAAAAAACCCCTTTTCCCGAGAACCCCCACGGGGGAAAAGaaa                                                                                     >  2:297089/1‑140 (MQ=255)
                                                 aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAAAAACTCCTTTTCCGGAGAACCCCAACGGGGGAAACGaaa                                                                                     >  1:946690/1‑140 (MQ=255)
                                                 aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAAAAACTCCTTTTCCGGAGAAACCCAACGGGGAAAACGaaa                                                                                     >  1:173087/1‑140 (MQ=255)
                                                 aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAAAAACCCCTTTTCCGGAGAACCCCAACGGGGGAAAAGaaa                                                                                     >  1:627853/1‑140 (MQ=255)
                                                     gATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAACAACTCCTTGTCCGGAGAAACCCCACGGGGGAAAAGAAAttta                                                                                 >  1:956209/1‑138 (MQ=255)
                                                      aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGTGAAAAAAAACAGGGGTAACAAAAAACTCCTTGTCCGGAGAAACCCAACCGGGGAAACGAAAATCaa                                                                                >  2:737812/1‑140 (MQ=255)
                                                      aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCaa                                                                                <  1:954085/140‑1 (MQ=255)
                                                      aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAACTCCTTGTCCGGAGAACCCCAACGGGGGAAACGAAAATCaa                                                                                >  2:124144/1‑140 (MQ=255)
                                                      aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAAAAAACAACCCCTTGTCCGGGGAACCCCAACGGGGAAAAAAAAAATCaa                                                                                >  2:198475/1‑140 (MQ=255)
                                                        ccGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATa                                                                              <  1:1340422/140‑1 (MQ=255)
                                                          gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATAcc                                                                            <  2:198992/140‑1 (MQ=255)
                                                          gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCTTTTCCGGAGAACCCCCACGGGGGAAAAGAAAATCAATaac                                                                            >  2:181551/1‑138 (MQ=255)
                                                          gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGCAAAAAAAAAAATGCCAAAAAAAAAAAACCTTTTCCGTAGAACCCCAACGGGGGAAAAGAAAATAAAAAcc                                                                            >  2:201028/1‑140 (MQ=255)
                                                           tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAAAAAAAAAATCCTTGTCCGGAGAACCCCAACGGGGGAAAAGAAAATTAATaacc                                                                           >  2:1355835/1‑137 (MQ=255)
                                                              aCAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAAAAACTCCTTGTCCGGGGAACCCCAACGGGGGAAAAGAAATTCAATAACGTCg                                                                        >  2:954085/1‑140 (MQ=255)
                                                                aGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGGAAAAAAAGTGGCATAACAAACAAATCCCTGTCCGGGGAACCCCAACGGGGGAAAAGAAATTTAAAACCGTCggg                                                                      >  2:235386/1‑139 (MQ=255)
                                                                       cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg                                                               <  1:1371181/140‑1 (MQ=255)
                                                                          caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                            <  1:687448/140‑1 (MQ=255)
                                                                          caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                            <  2:20225/140‑1 (MQ=255)
                                                                            aaGTTATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                          <  1:97167/140‑1 (MQ=255)
                                                                            aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                          <  1:1355835/140‑1 (MQ=255)
                                                                            aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAACAAACCCCTTTCCGGGGAAACCCCAACGGGGAAAACAAAATCAAAACCCTCCGGAATGACGaaaag                                                          >  2:674270/1‑138 (MQ=255)
                                                                              gTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCa                                                        <  2:16770/140‑1 (MQ=255)
                                                                                   aCAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTga                                                   <  2:1013300/140‑1 (MQ=255)
                                                                                    cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag                                                  <  1:936366/140‑1 (MQ=255)
                                                                                     aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGTAGGTgaga                                                 <  2:392971/140‑1 (MQ=255)
                                                                                     aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                                 <  1:1336873/140‑1 (MQ=255)
                                                                                       aaTCAACGCCATCGGGAAATACAGCGTGGCGGCAAGGCGGGCAAAAAAACAACGTTTTAAAAAAAAATTCCTGTGCGGAGGAAACCGAAAGGGGAAACTAAATTCAATAACTACGGCTATCAACAAACGCAGGTGAGaaa                                               >  2:1140689/1‑139 (MQ=255)
                                                                                         tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCCTTGTCCGGGGAACCCCAACGGGGGAAAAGAAAATCAATAACCTCGGGAATGACGAAAAGCAGGGGAGAAggg                                             >  2:740546/1‑140 (MQ=255)
                                                                                         tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGGCTAAAAAAAAAAACCCTCTCCGGAGAACCCCCACCGGGGAAACAAAATTCAATAACCTCCGGAATGACCGAAAGCAGGGGAGAAagg                                             >  2:914754/1‑140 (MQ=255)
                                                                                               ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                       <  2:124389/140‑1 (MQ=255)
                                                                                               ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                       <  1:297089/140‑1 (MQ=255)
                                                                                                cATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACgag                                      <  2:657431/140‑1 (MQ=255)
                                                                                                 aTCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAAAAAAACCTTGTCCGGAGGACCCCCACGGGGAAAACGAAAATTAATACCGTCGGGAATGACGAAAAGCAGGGGGGAAGGGGAAAgaga                                     >  2:451748/1‑140 (MQ=255)
                                                                                                  tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                                    <  1:1079131/140‑1 (MQ=255)
                                                                                                  tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                                    <  2:627853/140‑1 (MQ=255)
                                                                                                    gggAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTg                                  <  2:956209/140‑1 (MQ=255)
                                                                                                    gggAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTg                                  <  2:754732/140‑1 (MQ=255)
                                                                                                       aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                               <  1:1347824/140‑1 (MQ=255)
                                                                                                       aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                               <  2:1367027/140‑1 (MQ=255)
                                                                                                       aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                               <  1:1202629/140‑1 (MQ=255)
                                                                                                         aaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAAt                             <  1:565485/140‑1 (MQ=255)
                                                                                                             aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                         <  1:1006603/140‑1 (MQ=255)
                                                                                                                 tGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAAAAACTCCTTGTCCGGAGAACCCCAACGGGGGAAAAGAAAATCAATACCCTCGGGAATGACGAAAAGCAGGGGGGAAAGGGAAAGAGACTGCAAATGTACTGaa                     >  2:80643/1‑140 (MQ=255)
                                                                                                                    cggcATGGCGGGGAAAAAAACGTGGGATAACAAAAAAACCCTTTTCCGGAGAACCCCAACGGGGGAAAAGAAAATCAATACCGTCGGTGATGACGAAAAGCAGGGGGGAAGGGGAACGAGGCTGCAAATGGACTGAAttt                  >  2:954958/1‑140 (MQ=255)
                                                                                                                    cggcATGGCGGGGAAAAAAAAGTGGGATAAAAAACAACCCCCTTTCCGGAGAACCCCCACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAAttt                  >  2:779679/1‑140 (MQ=255)
                                                                                                                       cATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCAt               <  1:674270/140‑1 (MQ=255)
                                                                                                                        aTGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg              <  1:658231/140‑1 (MQ=255)
                                                                                                                          ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa            <  1:198475/140‑1 (MQ=255)
                                                                                                                          ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa            <  2:482357/140‑1 (MQ=255)
                                                                                                                          ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa            <  2:591185/140‑1 (MQ=255)
                                                                                                                                tAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAc      <  2:1356217/140‑1 (MQ=255)
                                                                                                                                    aaaaCGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACcaca  <  1:443950/140‑1 (MQ=255)
                                                                                                                                    aaaaCGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACcaca  <  1:124144/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                         
ACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACA  >  NC_000913/4568376‑4568647

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: