mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 35.9% | 82.2 / 31.7 | 64 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 753,125 | 0 | T | A | 29.5% | 125.7 / 23.2 | 61 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 3,401,459 | 0 | T | C | 25.4% | 126.1 / 20.8 | 71 | D625G (GAT→GGT) | csrD | regulator of CsrB and CsrC decay |
| * | NC_000913 | 2,326,450 | 0 | T | G | 25.0% | 76.7 / 18.3 | 40 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 445,558 | 0 | A | C | 24.3% | 70.9 / 14.3 | 37 | V370G (GTA→GGA) | yajR | putative major facilitator superfamily transport protein YajR |
| * | NC_000913 | 4,296,060 | 0 | C | T | 20.3% | 137.7 / 28.1 | 64 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 63 (0.910) | 16 (0.250) | 14/260 | 3.0 | 18.7% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 80 (1.230) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 4542682 = | 60 (0.870) | 6 (0.090) | 6/260 | 5.2 | 8.1% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 80 (1.230) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 2290113 | NA (NA) | 9 (0.130) | 4/278 | 6.4 | 15.0% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2406341 | 51 (0.740) | coding (301/939 nt) | lrhA | DNA‑binding transcriptional dual regulator LrhA | |||||
| * | ? | NC_000913 | = 4115226 | 46 (0.660) | 3 (0.040) | 3/276 | 6.9 | 5.5% | coding (354/1011 nt) | glpX | fructose‑1,6‑bisphosphatase 2 |
| ? | NC_000913 | 4115232 = | 57 (0.830) | coding (348/1011 nt) | glpX | fructose‑1,6‑bisphosphatase 2 | |||||