| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4180665 = | 147 (1.390) | 4 (0.040) | 4/258 | 8.2 | 2.8% | coding (106/366 nt) | rplL | 50S ribosomal subunit protein L12 |
| ? | NC_000913 | = 4180661 | 139 (1.420) | coding (102/366 nt) | rplL | 50S ribosomal subunit protein L12 | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTAGCTTCTTTCAGACCCAGGCCAGTTGCGCCACGTACTGCTTTGATAACAGCAACTTTGTTAGCGCCAGCAGCTTTCAGAATTACGTCGAATTCAGTTTTTTCTTCAGCAGCTTCAACCGGGCCAGCAGCTACAGCTACAGCAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4180813‑4180665‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcagcagcGGAAACACCGAATTTTTCTTCCATTGCAGAGATCAGTTCTACAACGTCCATTACAGACATAGCTGCAACTGCTTCAATGATTTGATCTTTAGTGATAGACATTTAAATTGTTCCTGAATATCAGAATAAGTTTATACG < NC_000913/4180661‑4180524 TTAGCTTCTTTCAGACCCAGGCCAGTTGCGCCACGTACTGCTTTGATAACAGCAACTTTGTTAGCGCCAGCAGCTTTCAGAATTACGTCGAATTCAGTTTTTTCTTCAGCAGCTTCAACCGGGCCAGCAGCTACAGCTAC > 1:623167/1‑140TTAGCTTCTTTCAGACCCAGGCCAGTTGCGCCACGTACTGCTTTGATAACAGCAACTTTGTTAGCGCCAGCAGCTTTCAGAATTACGTCGAATTCAGTTTTTTCTTCAGCAGCTTCAACCGGGCCAGCAGCTACAGCTAC > 1:1677606/1‑140 TCTTTCAGACCCAGGCCAGTTGCGCCACGTACTGCTTTGATAACAGCAACTTTGTTAGCGCCAGCAGCTTTCAGAATTACGTCGAATTCAGTTTTTTCTTCAGCAGCTTCAACCGGGCCAGCAGCTACAGCTACAGCAGC > 1:1236153/1‑140 CTTTCAGACCCAGGCCAGTTGCGCCACGTACTGCTTTGATAACAGCAACTTTGTTAGCGCCAGCAGCTTTCAGAATTACGTCGAATTCAGTTTTTTCTTCAGCAGCTTCAACCGGGCCAGCAGCTACAGCTACAGCAGCA > 1:746708/1‑140 CTTTCAGACCCAGGCCAGTTGCGCCACGTACTGCTTTGATAACAGCAACTTTGTTAGCGCCAGCAGCTTTCAGAATTACGTCGAATTCAGTTTTTTCTTCAGCAGCTTCAACCGGGCCAGCAGCTACAGCTACAGCAGCA > 2:434171/1‑140 CTTTCAGACCCAGGCCAGTTGCGCCACGTACTGCTTTGATAACAGCAACTTTGTTAGCGCCAGCAGCTTTCAGAATTACGTCGAATTCAGTTTTTTCTTCAGCAGCTTCAACCGGGCCAGCAGCTACAGCTACAGCAGCA > 1:1358559/1‑140 TTCAGACCCAGGCCAGTTGCGCCACGTACTGCTTTGATAACAGCAACTTTGTTAGCGCCAGCAGCTTTCAGAATTACGTCGAATTCAGTTTTTTCTTCAGCAGCTTCAACCGGGCCAGCAGCTACAGCTACAGCAGCAGC > 2:1267630/1‑140 AGGCCAGTTGCGCCACGTACTGCTTTGATAACAGCAACTTTGTTAGCGCCAGCAGCTTTCAGAATTACGTCGAATTCAGTTTTTTCTTCAGCAGCTTCAACCGGGCCAGCAGCTACAGCTACAGCAGCAGCGGAAACACC > 1:1145146/1‑140 ACTTTGTTAGCGCCAGCAGCTTTCAGAATTACGTCGAATTCAGTTTTTTCTTCAGCAGCTTCAACCGGGCCAGCAGCTACAGCTACAGCAGCAGCGGAAACACCGAATTTTTCTTCCATTGCAGAGATCAGTTCTACAAC < 2:1145146/140‑1 CGCCAGCAGCTTTCAGAATTACGTCGAATTCAGTTTTTTCTTCAGCAGCTTCAACCGGGCCAGCAGCTACAGCTACAGCAGCAGCGGAAACACCGAATTTTTCTTCCATTGCAGAGATCAGTTCTACAACGTCCATTACA > 2:895409/1‑140 TTCAGTTTTTTCTTCAGCAGCTTCAACCGGGCCAGCAGCTACAGCTACAGCAGCAGCGGAAACACCGAATTTTTCTTCCATTGCAGAGATCAGTTCTACAACGTCCATTACAGACATAGCTGCAACTGCTTCAATGATTT < 1:895409/140‑1 AGCAGCAGCGGAAACACCGAATTTTTCTTCCATTGCAGAGATCAGTTCTACAACGTCCATTACAGACATAGCTGCAACTGCTTCAATGATTTGATCTTTAGTGATAGACATTTAAATTGTTCCTG < 1:460168/125‑1 AGCAGCAGCGGAAACACCGAATTTTTCTTCCATTGCAGAGATCAGTTCTACAACGTCCATTACAGACATAGCTGCAACTGCTTCAATGATTTGATCTTTAGTGATAGACATTTAAATTGTTCCTG > 2:460168/1‑125 GCAGCAGCGGAAACACCGAATTTTTCTTCCATTGCAGAGATCAGTTCTACAACGTCCATTACAGACATAGCTGCAACTGCTTCAATGATTTGATCTTTAGTGATAGACATTTAAATTGTTCCTGAATATCAGAATAAGTT > 1:1558655/1‑140 GCAGCAGCGGAAACACCGAATTTTTCTTCCATTGCAGAGATCAGTTCTACAACGTCCATTACAGACATAGCTGCAACTGCTTCAATGATTTGATCTTTAGTGATAGACATTTAAATTGTTCCTGAATATCAGAATAAGTT > 1:963510/1‑140 GCAGCAGCGGAAACACCGAATTTTTCTTCCATTGCAGAGATCAGTTCTACAACGTCCATTACAGACATAGCTGCAACTGCTTCAATGATTTGATCTTTAGTGATAGACATTTAAATTGTTCCTGAATATCAGAATAAGTT > 2:191716/1‑140 CAGCAGCGGAAACACCGAATTTTTCTTCCATTGCAGAGATCAGTTCTACAACGTCCATTACAGACATAGCTGCAACTGCTTCAATGATTTGATCTTTAGTGATAGACATTTAAATTGTTCCTGAATATCAGAATAAGTTT < 1:918903/140‑1 CAGCAGCGGAAACACCGAATTTTTCTTCCATTGCAGAGATCAGTTCTACAACGTCCATTACAGACATAGCTGCAACTGCTTCAATGATTTGATCTTTAGTGATAGACATTTAAATTGTTCCTGAATATCAGAATAAGTTT > 2:1776550/1‑140 CAGCGGAAACACCGAATTTTTCTTCCATTGCAGAGATCAGTTCTACAACGTCCATTACAGACATAGCTGCAACTGCTTCAATGATTTGATCTTTAGTGATAGACATTTAAATTGTTCCTGAATATCAGAATAAGTTTATA > 1:154047/1‑140 AGCGGAAACACCGAATTTTTCTTCCATTGCAGAGATCAGTTCTACAACGTCCATTACAGACATAGCTGCAACTGCTTCAATGATTTGATCTTTAGTGATAGACATTTAAATTGTTCCTGAATATCAGAATAAGTTTATAC > 1:1742929/1‑140 GCGGAAACACCGAATTTTTCTTCCATTGCAGAGATCAGTTCTACAACGTCCATTACAGACATAGCTGCAACTGCTTCAATGATTTGATCTTTAGTGATAGACATTTAAATTGTTCCTGAATATCAGAATAAGTTTATACG > 1:569950/1‑140 TTAGCTTCTTTCAGACCCAGGCCAGTTGCGCCACGTACTGCTTTGATAACAGCAACTTTGTTAGCGCCAGCAGCTTTCAGAATTACGTCGAATTCAGTTTTTTCTTCAGCAGCTTCAACCGGGCCAGCAGCTACAGCTACAGCAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4180813‑4180665‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcagcagcGGAAACACCGAATTTTTCTTCCATTGCAGAGATCAGTTCTACAACGTCCATTACAGACATAGCTGCAACTGCTTCAATGATTTGATCTTTAGTGATAGACATTTAAATTGTTCCTGAATATCAGAATAAGTTTATACG < NC_000913/4180661‑4180524 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |