Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG29.5% 235.4 / 20.5 123T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (25/61);  new base G (36/0);  total (62/61)
Fisher's exact test for biased strand distribution p-value = 1.61e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 130 total aligned reads displayed.

GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTA  >  NC_000913/4568369‑4568637
                                                                                                                                       |                                                                                                                                         
gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGAaaaa                                                                                                                                       >  1:231108/1‑140 (MQ=255)
     aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg                                                                                                                                  <  1:1272110/140‑1 (MQ=255)
       aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                <  2:373947/140‑1 (MQ=255)
       aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                >  2:1609565/1‑140 (MQ=255)
       aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                <  1:568895/140‑1 (MQ=255)
       aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTg                                                                                                                                >  1:629433/1‑140 (MQ=255)
          gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaaaaaaagggcg                                                                                                                             >  2:922016/1‑133 (MQ=255)
             aTCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaa                                                                                                                          <  1:1747828/140‑1 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATaaaaaa                                                                                                                      >  2:1592219/1‑140 (MQ=255)
                  cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGGATaaaaaaa                                                                                                                     >  2:845479/1‑139 (MQ=255)
                     tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAaaaaaaaaa                                                                                                                  >  1:1338943/1‑139 (MQ=255)
                     tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAaaaaacaaa                                                                                                                  >  2:1215668/1‑139 (MQ=255)
                     tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGGATAaaaaacaaa                                                                                                                  >  2:575549/1‑139 (MQ=255)
                             cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTc                                                                                                       <  2:526099/140‑1 (MQ=255)
                              gTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGAGGCATAAAAAACAACACCT‑‑‑TGTcc                                                                                                      >  2:500977/1‑140 (MQ=255)
                               tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAAAAACTCCC‑‑‑TGTCCg                                                                                                     >  1:292327/1‑140 (MQ=255)
                                     aTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑c                                                                                              <  1:1536045/140‑1 (MQ=255)
                                      ttAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAACAAACAACCCCT‑‑‑TGTTCGgaggaac                                                                                              >  2:820549/1‑136 (MQ=255)
                                          tGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCaa                                                                                         <  1:845479/140‑1 (MQ=255)
                                          tGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAAATCCT‑‑‑TTTCCGGAGAA‑CCCCaa                                                                                         >  1:718690/1‑140 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACg                                                                                       >  1:1111598/1‑140 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACGGGCATAAAAAACAAACCCC‑‑‑TGTCCGGGGAA‑ACCCAAcc                                                                                       >  2:1782727/1‑139 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAACGGGCATAAAAAAAAAAACCT‑‑‑TGTCCGGAGAA‑ACCCAACagg                                                                                     >  2:406528/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAAAAACTCCC‑‑‑TGTCCGGGGAA‑CCCCCACggg                                                                                     >  1:1588495/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGGGAA‑ACCCAACggg                                                                                     >  1:197139/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACggg                                                                                     >  2:1378166/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACgggg                                                                                    >  2:726402/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACgggg                                                                                    >  2:667044/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGAGGCATAAAAAAAAAACCCT‑‑‑TGTCCGGAGAA‑CCCCAACgggg                                                                                    >  2:171481/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACATGGCATAAAAAATAAATCCC‑‑‑TTTCCCGGGAA‑CCCCCACgggg                                                                                    >  1:402380/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGGGAA‑CCCCCACgggg                                                                                    >  2:1733920/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAACAACTCCT‑‑‑TTTCCGGAGAA‑CCCCAACgggg                                                                                    >  1:248832/1‑140 (MQ=255)
                                                cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGa                                                                                   <  1:370252/140‑1 (MQ=255)
                                                cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGa                                                                                   <  1:1666691/140‑1 (MQ=255)
                                                 aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAATGGCATAAAAAAAAACACCT‑‑‑TTTCCGGAGAA‑CCCCCACggggga                                                                                  >  2:394388/1‑138 (MQ=255)
                                                   gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGgaaa                                                                                >  1:1399956/1‑140 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACg                                                                              <  1:575549/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACg                                                                              <  1:820549/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACg                                                                              <  2:1160379/140‑1 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGaa                                                                            >  1:659821/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGaa                                                                            <  1:726402/140‑1 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGaa                                                                            >  1:295824/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAAAAACACCT‑‑‑TGTCCGGAGAA‑ACCCAACGGGGGAAACGaa                                                                            >  2:1564346/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCAGAACAAAAAACCCCT‑‑‑TGTTCGGAGAA‑ACCCAAAGGGGGAAACGaa                                                                            >  1:213902/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCCTAACAAAAAACCCCT‑‑‑TTTCCGGGGAA‑CCCCAACGGGGGAAAAGaa                                                                            >  1:102839/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAACAAAAAACCCCT‑‑‑TGTTCGGAGAA‑ACCCAACGGGGGAAAAGaa                                                                            >  2:1310831/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGAAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGaa                                                                            >  1:280504/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAACATGCACAACAAAAAACCCCC‑‑‑TGTTCAGCGAA‑CCCCAACCGGGTAAAAGaaa                                                                           >  2:1176106/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAAAGGGATAAAAAAAAACTCCT‑‑‑TGTTCGGGGAA‑CCCCAACGGGGGAAACGaaa                                                                           >  2:229741/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGaaa                                                                           >  1:928857/1‑140 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCaa                                                                      >  1:1380155/1‑140 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAACTGGCGCAAAAAAAAACCCCT‑‑‑TGTCCGGAGAA‑CCCCAAAGGGGAAAACGAAATTCaa                                                                      >  2:1382968/1‑140 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAAAAAACAACCCCT‑‑‑TGTCCGGAGAA‑CCCCCACGGGGGAAAAGAAAATCaa                                                                      >  1:1393350/1‑140 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGGAAAAGAAATTCaa                                                                      >  2:950708/1‑140 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGGATAAAAAAAAAATCCT‑‑‑TGTCCGGGGAA‑CCCCAACGGGGGAAAAGaaaattaa                                                                      >  2:538195/1‑135 (MQ=255)
                                                              tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGGATAAAAAAAAACACCC‑‑‑TGTCCGGAGAA‑CCCCAACGGGGGAAAAGAAATTCaaa                                                                     >  2:1059911/1‑139 (MQ=255)
                                                               ccGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATa                                                                    <  2:1139589/140‑1 (MQ=255)
                                                               ccGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATa                                                                    <  1:722744/140‑1 (MQ=255)
                                                                 gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATAcc                                                                  <  1:1782727/140‑1 (MQ=255)
                                                                 gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGGGCTACAAACAACTCCT‑‑‑TGTGCGGAGAA‑CCCCTACGGGGGAAAAGAAATTCGATaac                                                                  >  2:703593/1‑138 (MQ=255)
                                                                 gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGAAAAAAAAAGCGGCAAAACAAACAACACCT‑‑‑TCTGCGGGGAACCCCCCCCGGGGAAACAAAAATTCaaacc                                                                   >  2:321687/1‑137 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAAAAAACAACTCCC‑‑‑TTTCCGGAGAA‑ACCCCACCGGGAAAACGAAAATCAAAAccc                                                                 >  2:810491/1‑139 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGCGAAAAAAAGAGGGAGAAAAAAAAACTCCT‑‑‑TGTTCGGGGAA‑CGCCAACGGGGAAAACAAAATCCAAAAccc                                                                 >  2:1083004/1‑139 (MQ=255)
                                                                       aGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGt                                                            >  2:130629/1‑140 (MQ=255)
                                                                         aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTaa                                                          <  1:950708/140‑1 (MQ=255)
                                                                         aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAAAAACCCCT‑‑‑TGTCCGGAGGA‑CCCCCACGGGGGAAAAGAAAATCAAAAACCTCGGGaa                                                          >  2:1142203/1‑140 (MQ=255)
                                                                            cGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGa                                                       <  1:703593/140‑1 (MQ=255)
                                                                                gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaa                                                   <  1:1664273/140‑1 (MQ=255)
                                                                                gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaa                                                   <  1:144254/140‑1 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                  <  1:922016/140‑1 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                  <  1:171481/140‑1 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                <  1:1730802/140‑1 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                <  1:1272457/140‑1 (MQ=255)
                                                                                    aGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAACTGGGATAAAAAAAAAATCCT‑‑‑TGTTCGGAGAA‑ACCCAACGGGGGAAAAGAAAATCAAAAACGTCGGTAATGACGaaaagg                                               >  2:1416324/1‑137 (MQ=255)
                                                                                     gTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCa                                              <  1:51653/140‑1 (MQ=255)
                                                                                      tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGCTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                <  1:1617711/140‑1 (MQ=255)
                                                                                        aTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGt                                           <  2:928857/140‑1 (MQ=255)
                                                                                         tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTg                                          >  2:1657750/1‑140 (MQ=255)
                                                                                         tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAAACGGGGAAACGAAATTCAAAACCCTCGGGAATGAAGAAAAGCAgggg                                          >  2:1658868/1‑138 (MQ=255)
                                                                                          aCAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTga                                         <  1:1499030/140‑1 (MQ=255)
                                                                                          aCAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTga                                         <  2:1378406/140‑1 (MQ=255)
                                                                                            aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                       <  2:659821/140‑1 (MQ=255)
                                                                                              aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg                                     <  1:526428/140‑1 (MQ=255)
                                                                                                tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACGGGCCAAAAAAAAAACACCT‑‑‑TGTCCCGAGAA‑CCCCAACCGGGGAAACGAAAATCAATACCCTCGGGAAAGACGAAAAGCAGGAGAGGAggg                                   >  2:1094492/1‑140 (MQ=255)
                                                                                                    cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGGAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGGGAGAAGGGCAAc                               >  1:459670/1‑140 (MQ=255)
                                                                                                      ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                             <  1:1215668/140‑1 (MQ=255)
                                                                                                      ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                             <  2:373788/140‑1 (MQ=255)
                                                                                                      ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                             <  1:220162/140‑1 (MQ=255)
                                                                                                       cATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACgag                            <  1:500977/140‑1 (MQ=255)
                                                                                                        aTCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGGCTAAAAAAAAACACCT‑‑‑TGTTCGGGGAA‑ACCCCACGGGGAAAAAGGAAATCAATAACGTCGGTGATGAAGAAAGGCAGGGGGGGAGGGGAACgaga                           >  2:31716/1‑140 (MQ=255)
                                                                                                           gggAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTg                        <  1:114074/140‑1 (MQ=255)
                                                                                                              aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                     <  2:1760638/140‑1 (MQ=255)
                                                                                                                      cGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCT‑‑‑TGTCCGGAGAA‑CCCCCACGGGGAAAACGAAATTCAATAACGTCGGGAATGACGAAAGGCAGGTGGGAAGGGCAACGAGACTGCAAAAGTACTg             >  2:1016041/1‑140 (MQ=255)
                                                                                                                         ggcggcATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAAt          <  2:14626/140‑1 (MQ=255)
                                                                                                                         ggcggcATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAAt          <  2:1254140/140‑1 (MQ=255)
                                                                                                                           cggcATGGCGGGTAAAAAAACGGGGCATAACAAACAAACCCT‑‑‑TTTCCGGAGGA‑ACCCAACGGGGGAAAAGAAATTCAAAACCGTCGGTAATGACGAAAAGCAGGGGAGAAAGGCAAAGAGAATGCAAATAGACTTAAttt        >  2:166411/1‑140 (MQ=255)
                                                                                                                            ggcATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTc       <  2:280504/140‑1 (MQ=255)
                                                                                                                                 ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa  <  1:833309/140‑1 (MQ=255)
                                                                                                                                 ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa  <  2:167046/140‑1 (MQ=255)
                                                                                                                                 ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa  <  1:538195/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                         
GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCT‑‑‑TGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTA  >  NC_000913/4568369‑4568637

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑