Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,619,2680TG20.0% 221.0 / 12.9 95V26G (GTA→GGA) rhsBrhs element protein RhsB
Reads supporting (aligned to +/- strand):  ref base T (25/51);  new base G (19/0);  total (44/51)
Fisher's exact test for biased strand distribution p-value = 3.13e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 103 total aligned reads displayed.

AAGTTTTTCTTCGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGT  >  NC_000913/3619129‑3619405
                                                                                                                                           |                                                                                                                                         
aaGTTTTTCTTCGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGt                                                                                                                                           <  2:1216446/140‑1 (MQ=255)
 aGTTTTTCTTCGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTa                                                                                                                                          <  1:1114551/140‑1 (MQ=255)
       tcttcGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTAtt                                                                                                                                    <  2:1815302/140‑1 (MQ=255)
       tcttcGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTAtt                                                                                                                                    <  1:1425060/140‑1 (MQ=255)
        cttcGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTg                                                                                                                                   <  1:317897/140‑1 (MQ=255)
            gCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGc                                                                                                                               <  2:1868015/140‑1 (MQ=255)
             cTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGt                                                                                                                                 <  2:1662697/137‑1 (MQ=255)
             cTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGt                                                                                                                                 >  1:1662697/1‑137 (MQ=255)
                 ttCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCa                                                                                                                          <  1:1683650/140‑1 (MQ=255)
                 ttCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCa                                                                                                                          <  2:245930/140‑1 (MQ=255)
                 ttCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCa                                                                                                                          <  2:1361349/140‑1 (MQ=255)
                 ttCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCa                                                                                                                          <  2:747876/140‑1 (MQ=255)
                      aTGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGc                                                                                                                     <  1:1338653/140‑1 (MQ=255)
                          aGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTgg                                                                                                                 <  2:1054441/140‑1 (MQ=255)
                               cTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGGTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGt                                                                                                            >  1:1942830/1‑140 (MQ=255)
                                tGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGtt                                                                                                           >  1:1306106/1‑140 (MQ=255)
                                tGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGtt                                                                                                           <  2:1046052/140‑1 (MQ=255)
                                tGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGtt                                                                                                           >  1:1695530/1‑140 (MQ=255)
                                tGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGtt                                                                                                           >  2:67712/1‑140 (MQ=255)
                                  tCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTTGTGCCCCCACCGGCGTGGCCTGTTCg                                                                                                         >  2:2036876/1‑140 (MQ=255)
                                  tCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCg                                                                                                         <  1:693815/140‑1 (MQ=255)
                                  tCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGGACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCg                                                                                                         >  2:552649/1‑140 (MQ=255)
                                  tCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGCTCAGCCGGGGGACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCg                                                                                                         >  1:614958/1‑140 (MQ=255)
                                   cATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGGTCAGCCGGGGGACGTATTGGTGCCCCCCCCGGCGTGGCCCGTTCgg                                                                                                        >  2:1497732/1‑140 (MQ=255)
                                    aTTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGGACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCggg                                                                                                       >  1:1462357/1‑139 (MQ=255)
                                    aTTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGGTCAGCCGGGGGACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGgt                                                                                                       >  1:452494/1‑140 (MQ=255)
                                     ttAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGgtg                                                                                                      <  2:1171757/140‑1 (MQ=255)
                                     ttAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGGACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGgtg                                                                                                      >  2:1921818/1‑140 (MQ=255)
                                          ataataGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGccc                                                                                                 <  2:987619/140‑1 (MQ=255)
                                          ataataGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGccc                                                                                                 >  2:38975/1‑140 (MQ=255)
                                          ataataGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGccc                                                                                                 <  2:608923/140‑1 (MQ=255)
                                          ataataGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGccc                                                                                                 <  1:351933/140‑1 (MQ=255)
                                            aataGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCcg                                                                                               <  2:2059175/140‑1 (MQ=255)
                                            aataGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGGACGGATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGGGCCCcg                                                                                               >  2:1457831/1‑140 (MQ=255)
                                            aataGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGGTCAGCCGGGGGACGGATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGGGgcccc                                                                                               >  2:1933785/1‑139 (MQ=17)
                                             ataGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTTTTCAGGGGTCAGCCGGGGGACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCcgg                                                                                              >  2:360844/1‑140 (MQ=255)
                                                  aaaGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAg                                                                                         <  2:1966522/140‑1 (MQ=255)
                                                   aaGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAgg                                                                                        >  1:70368/1‑139 (MQ=255)
                                                   aaGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGGTCAGTCGGGGGACGTATTGGTGCCCCCCCCGGCGTGGCCTGTTCGGGGTGCCCccgcggggg                                                                                        >  2:2082240/1‑137 (MQ=14)
                                                   aaGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGAAGCAATGTTCAGGGGTCAGCCGGGGGACGCATTAGTGCCCCCCCCGGCGTGGCCTCTTTGGCGTGCCCcggggcggg                                                                                        >  2:1180733/1‑134 (MQ=14)
                                                     ggATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGa                                                                                      >  1:1064219/1‑140 (MQ=255)
                                                           tACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCg                                                                                >  1:1591290/1‑140 (MQ=255)
                                                           tACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCg                                                                                <  1:972510/140‑1 (MQ=255)
                                                                tGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCAt                                                                           <  1:552649/140‑1 (MQ=40)
                                                                tGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGGGCCCCCGCGGAGGGACggccggcccc                                                                           >  2:658694/1‑138 (MQ=14)
                                                                tGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGGACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGGGTGCCCCGGCGGGGGGACGTCCGGcccc                                                                           >  2:1102429/1‑138 (MQ=11)
                                                                 gAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATc                                                                          <  1:1921818/140‑1 (MQ=40)
                                                                 gAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCACCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATc                                                                          >  1:328557/1‑140 (MQ=255)
                                                                 gAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGGACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGGGTGCCCCGGCGGGGGGACGGCCGGCCCTc                                                                          >  2:223089/1‑140 (MQ=11)
                                                                  aGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATcc                                                                         >  2:1278473/1‑140 (MQ=40)
                                                                     ggAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGt                                                                      <  1:38975/140‑1 (MQ=40)
                                                                     ggAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGt                                                                      <  2:1591290/140‑1 (MQ=40)
                                                                      gAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTc                                                                     <  1:994901/140‑1 (MQ=40)
                                                                       aaaaCCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGTCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCa                                                                    <  1:2082240/140‑1 (MQ=255)
                                                                       aaaaCCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCa                                                                    <  2:1948268/140‑1 (MQ=40)
                                                                         aaCCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAAt                                                                  <  2:1487523/140‑1 (MQ=40)
                                                                            cggcggCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGGTCAGCCGGGGGACGTATTGGTGCCCCCCCCGGCGTGGGCTGTTCGGGGTGCCCCGGCGGGGGGACGGCCGGCCATCCAGTCAATccc                                                               >  2:1444576/1‑140 (MQ=11)
                                                                              gcggcgCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCt                                                             <  2:958099/140‑1 (MQ=40)
                                                                               cggcgCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTg                                                            <  1:1829500/140‑1 (MQ=39)
                                                                                 gcgcGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTTTTCCGGGGTCAGCCGGGGTACGGATTGGTGTCCCCCCCGGCGGGGCCTGTTCCGTGTGGCCCGGCGGGGTGGCGTCCGGCCCTCCGGTCAATCCCCttcc                                                          >  2:2048168/1‑137 (MQ=11)
                                                                                 gcgcGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCt                                                          <  2:1064219/140‑1 (MQ=37)
                                                                                 gcgcGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCt                                                          <  1:1153256/140‑1 (MQ=37)
                                                                                 gcgcGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCt                                                          <  2:2020387/140‑1 (MQ=37)
                                                                                 gcgcGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCt                                                          <  1:1933785/140‑1 (MQ=37)
                                                                                    cgTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCgg                                                       <  2:1942830/140‑1 (MQ=37)
                                                                                     gTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGt                                                      >  1:1759215/1‑140 (MQ=37)
                                                                                      tCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGGGGGCCCCGGCGGAGTGACGTCCGGCCATCCGGGCAATCCCCTGCTCgggg                                                     >  2:319734/1‑138 (MQ=255)
                                                                                         gggTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCaa                                                  <  1:1278473/140‑1 (MQ=37)
                                                                                         gggTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCaa                                                  <  1:886507/140‑1 (MQ=37)
                                                                                            tGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGGTCAGCCGGGGGACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGGGACGTCCGGCCATCCGGTCAATCCCCCGCTCGGGGCAAAgg                                               >  2:1400927/1‑140 (MQ=11)
                                                                                             gACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGt                                              <  2:1695530/140‑1 (MQ=34)
                                                                                             gACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGt                                              <  2:1306106/140‑1 (MQ=34)
                                                                                              aCATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTc                                             >  1:381846/1‑140 (MQ=34)
                                                                                              aCATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGGACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTc                                             >  1:1764815/1‑140 (MQ=21)
                                                                                                aTGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCt                                           >  1:788008/1‑140 (MQ=34)
                                                                                                    cGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGGACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCCTCCGGGCAATCCCCCGCTCGGTGCAAAGGTCCTTccc                                       >  2:825180/1‑140 (MQ=11)
                                                                                                    cGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGGACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCACGGCGGAGGGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTccc                                       >  1:1969604/1‑140 (MQ=255)
                                                                                                         tATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGGACGTATTGGTGCCCCCACCGGCGTGGGCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGGCAATCCCCTGCTCGGTGCAAAGGGCCTTCCCggggg                                  >  2:656856/1‑137 (MQ=11)
                                                                                                          aTGGCGGTAGCATTTTTCAGGGGTCCGCCGGGGGACGGATTGGTGCCCCCACCGGCGTGGGCTGTGCGGGGTGCCCCCGCGGAGGGACGTCCGGCCAACCGGACCATTCCCTGGTTGGTGCAAAGGGCCTTCCCCGTGaa                                 >  2:679828/1‑140 (MQ=2)
                                                                                                          aTGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGGACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCCGCTCGGTGCAAAGGGCCTTCCCGGGGaa                                 >  2:911083/1‑140 (MQ=255)
                                                                                                            ggCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAAc                               <  1:1457831/140‑1 (MQ=34)
                                                                                                              cGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCg                             >  2:772610/1‑140 (MQ=34)
                                                                                                                 tAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACa                          <  1:1102429/140‑1 (MQ=34)
                                                                                                                 tAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACa                          <  2:1759215/140‑1 (MQ=34)
                                                                                                                 tAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACa                          <  1:223089/140‑1 (MQ=34)
                                                                                                                 tAGCATTGTTCAGGGTTCAGCCGGGGTACGGATTGGTGCCCCCACCGGCGTGGCCTGTTCGGGGTGCCCCGGGGGGGGGGCGTCCGGCCCTCCGGGCAATCCCCCGCTCGGGGCAAAGGCCCTTCCCGGGGAAACCGACa                          >  2:114041/1‑140 (MQ=11)
                                                                                                                 tAGCATTGTTCAGGGTTCAGCCGGGGGACGTATTGGTGCCCCCACCGGCGTGGCCTGTTTGGTGTGCCCCGGCGGGGTGACGTCCCGCCCTCCCGGCAATCCCCCGCTCGGTGCAAAGGGCCTTCCCGGTGAAAACGACa                          >  2:448877/1‑140 (MQ=11)
                                                                                                                     aTTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGc                      >  2:1832635/1‑140 (MQ=34)
                                                                                                                      ttGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCACCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGcc                     <  2:328557/140‑1 (MQ=21)
                                                                                                                       tGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGccc                    >  1:1912872/1‑140 (MQ=34)
                                                                                                                                ttCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTgcccggcc           <  1:861165/140‑1 (MQ=34)
                                                                                                                                   aGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGc        >  2:1592883/1‑140 (MQ=34)
                                                                                                                                   aGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGc        >  2:1493395/1‑140 (MQ=35)
                                                                                                                                   aGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGAGCAAAAGTCCTTCCCGGTGCAACCGACATCGCCCTGCCCGGCCCGc        >  2:502644/1‑140 (MQ=255)
                                                                                                                                     ccGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTg      <  1:679828/140‑1 (MQ=34)
                                                                                                                                     ccGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTg      <  1:911083/140‑1 (MQ=34)
                                                                                                                                       ggggTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGcc    <  1:2048168/140‑1 (MQ=34)
                                                                                                                                        gggTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCg   >  1:2070777/1‑140 (MQ=34)
                                                                                                                                        gggTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCg   >  2:1969197/1‑140 (MQ=34)
                                                                                                                                         ggTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGt  <  2:1678359/140‑1 (MQ=34)
                                                                                                                                           |                                                                                                                                         
AAGTTTTTCTTCGCTTTTTCGTATGAAGATACTGTCATTAAAATAATAGAAAAGGATTTTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGT  >  NC_000913/3619129‑3619405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑