mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 41.2% | 46.6 / 30.0 | 51 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 3,206,435 | 0 | C | T | 36.7% | 28.6 / 19.2 | 30 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 770,897 | 0 | T | G | 32.4% | 44.9 / 15.1 | 37 | intergenic (+286/‑561) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I |
| * | NC_000913 | 4,101,514 | 0 | G | T | 30.9% | 99.3 / 16.5 | 42 | intergenic (+84/‑176) | sodA/kdgT | superoxide dismutase (Mn)/2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter |
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.8% | 121.0 / 49.6 | 72 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 753,125 | 0 | T | A | 24.6% | 137.7 / 15.7 | 57 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 1,068,173 | 0 | T | G | 23.1% | 109.6 / 10.0 | 53 | G31G (GGT→GGG) | ymdF | conserved protein YmdF |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 54 (0.760) | 11 (0.170) | 11/260 | 3.7 | 15.1% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 73 (1.110) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 2406443 | 88 (1.250) | 14 (0.200) | 9/278 | 4.5 | 13.7% | coding (199/939 nt) | lrhA | DNA‑binding transcriptional dual regulator LrhA |
| ? | NC_000913 | = 3131340 | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 3925107 | 95 (1.410) | 7 (0.100) +CAGCA |
3/256 | 6.6 | 6.9% | coding (527/1890 nt) | mnmG | 5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG |
| ? | NC_000913 | 3925108 = | 97 (1.370) | coding (526/1890 nt) | mnmG | 5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG | |||||
| * | ? | NC_000913 | 4040344 = | NA (NA) | 3 (0.040) | 3/264 | 6.7 | NA | noncoding (2826/2905 nt) | rrlA | 23S ribosomal RNA |
| ? | NC_000913 | = 4040340 | NA (NA) | noncoding (2822/2905 nt) | rrlA | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | 228583 = | 29 (0.410) | 3 (0.040) | 3/264 | 6.7 | 9.8% | noncoding (2825/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | NC_000913 | = 228579 | NA (NA) | noncoding (2821/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 697697 | 59 (0.840) | 3 (0.040) | 3/272 | 6.8 | 4.9% | coding (1481/1665 nt) | asnB | asparagine synthetase B |
| ? | NC_000913 | 697701 = | 58 (0.840) | coding (1477/1665 nt) | asnB | asparagine synthetase B | |||||
| * | ? | NC_000913 | = 733526 | 127 (1.800) | 3 (0.040) | 3/278 | 6.9 | 2.3% | coding (3944/4194 nt) | rhsC | rhs element protein RhsC |
| ? | NC_000913 | 733531 = | 129 (1.830) | coding (3949/4194 nt) | rhsC | rhs element protein RhsC | |||||