Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,069,690 T→C T238A (ACC→GCC)  yihR ← putative aldose 1‑epimerase YihR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,069,6900TC98.8% 302.2 / ‑6.1 84T238A (ACC→GCC) yihRputative aldose 1‑epimerase YihR
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (42/41);  total (43/41)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TAAAGGCGTTAGGCGGGCAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCA  >  NC_000913/4069555‑4069826
                                                                                                                                       |                                                                                                                                        
tAAAGGCGTTAGGCGGGCAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCAtt                                                                                                                                      <  2:1171363/140‑1 (MQ=255)
   aGGCGTTAGGCGGGCAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTcc                                                                                                                                   >  2:529357/1‑140 (MQ=255)
    ggCGTTAGGCGGGCAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTccc                                                                                                                                  >  1:543630/1‑140 (MQ=255)
     gCGTTAGGCGGGCAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCca                                                                                                                                 <  2:1631196/140‑1 (MQ=255)
       gTTAGGCGGGCAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCcaca                                                                                                                               >  1:1038643/1‑140 (MQ=255)
       gTTAGGCGGGCAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCcaca                                                                                                                               >  1:457548/1‑140 (MQ=255)
         tAGGCGGGCAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACaaa                                                                                                                             >  2:357003/1‑140 (MQ=255)
               ggCAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGTTCATTTCCCACAAATCAttt                                                                                                                       >  2:972481/1‑139 (MQ=255)
               ggCAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTa                                                                                                                       >  1:1370072/1‑140 (MQ=255)
               ggCAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTa                                                                                                                       >  1:561478/1‑140 (MQ=255)
                 cAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGc                                                                                                                     <  2:561478/140‑1 (MQ=255)
                 cAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGc                                                                                                                     <  2:1473383/140‑1 (MQ=255)
                 cAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGc                                                                                                                     <  2:1370072/140‑1 (MQ=255)
                 cAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGc                                                                                                                     <  1:840086/140‑1 (MQ=255)
                 cAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGc                                                                                                                     <  1:642704/140‑1 (MQ=255)
                 cAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGc                                                                                                                     <  1:133413/140‑1 (MQ=255)
                   aCTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCgg                                                                                                                   <  1:729428/140‑1 (MQ=255)
                   aCTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCgg                                                                                                                   <  1:32171/140‑1 (MQ=255)
                       aTAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGtttt                                                                                                               <  1:357003/140‑1 (MQ=255)
                              cAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAg                                                                                                                      <  2:675762/126‑1 (MQ=255)
                              cAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAg                                                                                                                      >  1:675762/1‑126 (MQ=255)
                              cAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGgtg                                                                                                        >  2:198433/1‑140 (MQ=255)
                              cAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGgtg                                                                                                        >  2:1635161/1‑140 (MQ=255)
                                     cAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGa                                                                                                 >  1:540596/1‑140 (MQ=255)
                                     cAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGa                                                                                                 >  2:1638145/1‑140 (MQ=255)
                                         cccTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCTTTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTTGAtttt                                                                                             >  2:1147749/1‑140 (MQ=255)
                                         cccTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGt                                                                                                    <  1:683036/133‑1 (MQ=255)
                                         cccTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGt                                                                                                    >  2:683036/1‑133 (MQ=255)
                                            tGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCTTTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTTGATTTTTGt                                                                                          <  1:1147749/140‑1 (MQ=255)
                                            tGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGt                                                                                          >  2:655002/1‑140 (MQ=255)
                                             gACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTc                                                                                         <  1:1269564/140‑1 (MQ=255)
                                             gACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTc                                                                                         <  1:136254/140‑1 (MQ=255)
                                                 cTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCgg                                                                                     <  1:198433/140‑1 (MQ=255)
                                                 cTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCgg                                                                                     <  2:32622/140‑1 (MQ=255)
                                                  tGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTc                                                                                         <  1:1487596/135‑1 (MQ=255)
                                                  tGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTc                                                                                         >  2:1487596/1‑135 (MQ=255)
                                                    tAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTa                                                                                  <  2:513249/140‑1 (MQ=255)
                                                    tAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTa                                                                                  >  2:1548634/1‑140 (MQ=255)
                                                    tAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTa                                                                                  >  2:309508/1‑140 (MQ=255)
                                                    tAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTa                                                                                  <  1:1638145/140‑1 (MQ=255)
                                                         tttCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTAttttt                                                                             >  1:297926/1‑140 (MQ=255)
                                                          ttCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTAtttttt                                                                            >  1:279294/1‑140 (MQ=255)
                                                                    taAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGt                                                                  <  2:1095756/140‑1 (MQ=255)
                                                                     aaaCCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTg                                                                 <  2:358765/140‑1 (MQ=255)
                                                                            cACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTa                                                          >  1:93363/1‑140 (MQ=255)
                                                                            cACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTa                                                          >  1:761559/1‑140 (MQ=255)
                                                                            cACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTa                                                          >  2:1370434/1‑140 (MQ=255)
                                                                            cACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTa                                                          >  2:245838/1‑140 (MQ=255)
                                                                              cccAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTaaa                                                        <  1:48228/140‑1 (MQ=255)
                                                                              cccAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTaaa                                                        <  1:1231225/140‑1 (MQ=255)
                                                                              cccAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTaaa                                                        <  2:593971/140‑1 (MQ=255)
                                                                                cAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATc                                                      <  1:1370434/140‑1 (MQ=255)
                                                                                cAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTCTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATc                                                      <  2:1038643/140‑1 (MQ=255)
                                                                                  gagTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCa                                                    <  2:543630/140‑1 (MQ=255)
                                                                                       gATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAg                                                   >  1:410623/1‑136 (MQ=255)
                                                                                       gATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAg                                                   <  2:410623/136‑1 (MQ=255)
                                                                                       gATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCtca                                               >  1:698155/1‑140 (MQ=255)
                                                                                       gATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCtca                                               >  1:1452878/1‑140 (MQ=255)
                                                                                        aTCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCtcat                                              <  2:63027/140‑1 (MQ=255)
                                                                                         tCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCtcatc                                             >  2:497225/1‑140 (MQ=255)
                                                                                            gAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAAc                                          <  2:540596/140‑1 (MQ=255)
                                                                                            gAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAAc                                          <  2:457548/140‑1 (MQ=255)
                                                                                            gAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAAc                                          <  2:65623/140‑1 (MQ=255)
                                                                                             aaCAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACg                                         >  1:934604/1‑140 (MQ=255)
                                                                                             aaCAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACg                                         >  2:934009/1‑140 (MQ=255)
                                                                                             aaCAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACg                                         >  1:613241/1‑140 (MQ=255)
                                                                                             aaCAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACg                                         <  1:1026637/140‑1 (MQ=255)
                                                                                             aaCAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACg                                         >  1:896079/1‑140 (MQ=255)
                                                                                             aaCAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACg                                         >  1:10087/1‑140 (MQ=255)
                                                                                                  aGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACgtggtg                                    >  1:94583/1‑140 (MQ=255)
                                                                                                    gCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGaa                                  <  2:1060236/140‑1 (MQ=255)
                                                                                                    gCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGaa                                  <  1:655002/140‑1 (MQ=255)
                                                                                                    gCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGaa                                  >  1:1079134/1‑140 (MQ=255)
                                                                                                       tACCGAAAGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTAGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGCg                               >  1:1267461/1‑140 (MQ=255)
                                                                                                              aGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGCGTTGTCgg                        >  2:776337/1‑140 (MQ=255)
                                                                                                              aGCGCCTGCTGTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGCGTTGTCgg                        >  2:1170478/1‑140 (MQ=255)
                                                                                                                      ctgTGGATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGt                <  1:311917/140‑1 (MQ=255)
                                                                                                                           gATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCa           >  1:969096/1‑140 (MQ=255)
                                                                                                                           gATGGGTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCa           >  1:367314/1‑140 (MQ=255)
                                                                                                                               gggtaTGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCATCGa       <  2:359729/136‑1 (MQ=255)
                                                                                                                               ggTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCATCGa       <  1:309508/140‑1 (MQ=255)
                                                                                                                                gTAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCATCGAc      >  1:533873/1‑140 (MQ=255)
                                                                                                                                 tAATGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCATCGACg     >  1:920114/1‑140 (MQ=255)
                                                                                                                                    tGGCCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCa  <  2:896079/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
TAAAGGCGTTAGGCGGGCAACTCATAGGTTCAACTGCCAGTCCCTGACGCTGTAATTTTTCACCGCTATAAACCTGCACCCAGAGTTGATCGGAACAAAGGCTTACCGAAAGCGCCTGCTGTGGATGGGTAATGGTCATTTCCCACAAATCATTAGCGGTTTTAAAGGTGTGGTCGATTTTTGTCGCGGCTATTTTTTTCGCCTGCGTGAAATTTAAATCCAGCTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCA  >  NC_000913/4069555‑4069826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: