BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,108,682	A→C	G301G (GGT→GGG)	rfbX ←	polyisoprenol‑linked O‑antigen repeat unit flippase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,108,682	0	A	C	100.0%	520.1 / NA	138	G301G (GGT→GGG)	rfbX	polyisoprenol‑linked O‑antigen repeat unit flippase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (70/68); total (70/68)

Only 100 of 140 total aligned reads displayed.

ACATTACTTAATGAAATAAGAAAAGGCAGAGGCGATATAATCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCACCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAGCGCGTTTCTTA  >  NC_000913/2108548‑2108818

aCATTACTTAATGAAATAAGAAAAGGCAGAGGCGATATAATCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAAt                                                                                                                                     <  1:1434034/140‑1 (MQ=255)

    tACTTAATGAAATAAGAAAAGGCAGAGGCGATATAATCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCaaa                                                                                                                                 >  1:361022/1‑140 (MQ=255)

     aCTTAATGAAATAAGAAAAGGCAGAGGCGATATAATCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAAc                                                                                                                                <  1:69316/140‑1 (MQ=255)

         aaTGAAATAAGAAAAGGCAGAGGCGATATAATCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCaa                                                                                                                            >  2:662746/1‑140 (MQ=255)

          aTGAAATAAGAAAAGGCAGAGGCGATATAATCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAg                                                                                                                           <  2:786202/140‑1 (MQ=255)

          aTGAAATAAGAAAAGGCAGAGGCGATATAATCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAg                                                                                                                           <  1:357638/140‑1 (MQ=255)

          aTGAAATAAGAAAAGGCAGAGGCGATATAATCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAg                                                                                                                           <  1:1207088/140‑1 (MQ=255)

          aTGAAATAAGAAAAGGCAGAGGCGATATAATCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAg                                                                                                                           <  2:1210433/140‑1 (MQ=255)

           tGAAATAAGAAAAGGCAGAGGCGATATAATCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGc                                                                                                                          >  2:1344979/1‑140 (MQ=255)

            gAAATAAGAAAAGGCAGAGGCGATATAATCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCa                                                                                                                         >  2:1640965/1‑140 (MQ=255)

                tAAGAAAAGGCAGAGGCGATATAATCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCGAACTCAAGCAGGTc                                                                                                                     >  2:594629/1‑140 (MQ=255)

                tAAGAAAAGGCAGAGGCGATATAATCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTc                                                                                                                     >  1:205904/1‑140 (MQ=255)

                             agGCGATATAATCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTttaa                                                                                                        >  2:1187171/1‑140 (MQ=255)

                              ggCGATATAATCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTttaat                                                                                                       <  1:704004/140‑1 (MQ=255)

                              ggCGATATAATCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTttaat                                                                                                       <  1:1587011/140‑1 (MQ=255)

                                  atatAATCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTaaa                                                                                                   >  2:1067244/1‑140 (MQ=255)

                                   tataATCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTaaaa                                                                                                  >  1:1414288/1‑140 (MQ=255)

                                     taATCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATc                                                                                                <  1:655391/140‑1 (MQ=255)

                                        tCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATcaca                                                                                             <  1:529722/140‑1 (MQ=255)

                                             aGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCtt                                                                                        >  2:426818/1‑140 (MQ=255)

                                             aGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCtt                                                                                        >  2:968788/1‑140 (MQ=255)

                                               cacaATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTca                                                                                      >  2:1027585/1‑140 (MQ=255)

                                                 caATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTcaca                                                                                    <  2:1416341/140‑1 (MQ=255)

                                                 caATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTcaca                                                                                    <  2:881229/140‑1 (MQ=255)

                                                    tCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGa                                                                                 >  1:830786/1‑140 (MQ=255)

                                                      aCTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGAtt                                                                               <  2:63915/140‑1 (MQ=255)

                                                        tGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTaa                                                                             >  2:890774/1‑140 (MQ=255)

                                                           aTTATCATATCCCCGCCCTATTCTTATTGTTACTAGTATAGATGCACCCAAGAGCAGAATTAGTGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGaa                                                                          <  2:1403162/140‑1 (MQ=255)

                                                            ttATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAAc                                                                         <  1:433117/140‑1 (MQ=255)

                                                               tCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAg                                                                      >  2:1134973/1‑140 (MQ=255)

                                                               tCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAg                                                                      >  2:1205702/1‑140 (MQ=255)

                                                                    tCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTAc                                                                 >  2:1298837/1‑140 (MQ=255)

                                                                       cGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTg                                                              <  2:699110/140‑1 (MQ=255)

                                                                         gCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAGGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGat                                                            >  1:430918/1‑140 (MQ=255)

                                                                         gCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACt                                                                <  2:1069963/136‑1 (MQ=255)

                                                                         gCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGat                                                            >  2:1598177/1‑140 (MQ=255)

                                                                         gCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGat                                                            >  2:1529188/1‑140 (MQ=255)

                                                                         gCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGat                                                            >  1:1208380/1‑140 (MQ=255)

                                                                         gCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGat                                                            >  2:19700/1‑140 (MQ=255)

                                                                         gCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGat                                                            >  1:33513/1‑140 (MQ=255)

                                                                         gCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGat                                                            >  1:703841/1‑140 (MQ=255)

                                                                         gCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGat                                                            >  2:1435109/1‑140 (MQ=255)

                                                                         gCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGat                                                            <  1:594629/140‑1 (MQ=255)

                                                                         gCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGat                                                            >  2:847992/1‑140 (MQ=255)

                                                                         gCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGACAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGat                                                            >  1:121977/1‑140 (MQ=255)

                                                                          cccTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCGCACCCTTCACACGATTAAGAACAAGCGTACTTGata                                                           >  2:894929/1‑140 (MQ=255)

                                                                          cccTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGata                                                           >  1:693189/1‑140 (MQ=255)

                                                                            cTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATAtt                                                         <  1:1067244/140‑1 (MQ=255)

                                                                              ataCTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGt                                                                   >  1:222100/1‑128 (MQ=255)

                                                                              ataCTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGt                                                                   <  2:222100/128‑1 (MQ=255)

                                                                              ataCTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCt                                                       <  2:1211494/140‑1 (MQ=255)

                                                                                   tATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGt                                                  >  1:250395/1‑140 (MQ=255)

                                                                                      ttttACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGtata                                               <  1:1529188/140‑1 (MQ=255)

                                                                                      ttttACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGtata                                               <  2:1042328/140‑1 (MQ=255)

                                                                                         tACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTg                                            <  1:19700/140‑1 (MQ=255)

                                                                                           cTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCt                                          <  2:213231/140‑1 (MQ=255)

                                                                                              gTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTgg                                       >  1:773433/1‑140 (MQ=255)

                                                                                                  aGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGa                                   <  1:968788/140‑1 (MQ=255)

                                                                                                  aGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGa                                   <  1:1298837/140‑1 (MQ=255)

                                                                                                  aGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGa                                   <  1:387628/140‑1 (MQ=255)

                                                                                                    aTGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATa                                 <  1:1245108/140‑1 (MQ=255)

                                                                                                    aTGCACCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATa                                 <  1:662746/140‑1 (MQ=255)

                                                                                                        aCCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGTAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGAt                             >  1:1274221/1‑140 (MQ=255)

                                                                                                        aCCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGAt                             >  1:1319719/1‑140 (MQ=255)

                                                                                                        aCCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGAt                             >  2:189081/1‑140 (MQ=255)

                                                                                                        aCCCAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGAt                             >  2:1618631/1‑140 (MQ=255)

                                                                                                         cccAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAATAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGAtt                            >  2:569447/1‑140 (MQ=255)

                                                                                                         cccAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGAtt                            >  2:441233/1‑140 (MQ=255)

                                                                                                         cccAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGAtt                            >  1:109572/1‑140 (MQ=255)

                                                                                                         cccAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGAtt                            >  1:206441/1‑140 (MQ=255)

                                                                                                         cccAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGAtt                            >  2:1155178/1‑140 (MQ=255)

                                                                                                         cccAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGAtt                            >  1:136453/1‑140 (MQ=255)

                                                                                                         cccAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGAtt                            >  1:757900/1‑140 (MQ=255)

                                                                                                         cccAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGAtt                            >  2:1513912/1‑140 (MQ=255)

                                                                                                         cccAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGAtt                            >  1:961314/1‑140 (MQ=255)

                                                                                                         cccAAGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGGATATTGCTTGGGCGATAGGAtt                            >  2:300802/1‑140 (MQ=255)

                                                                                                            aaGAGCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTaa                         >  2:868965/1‑140 (MQ=255)

                                                                                                             agagCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAAt                        <  1:1618631/140‑1 (MQ=255)

                                                                                                             agagCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAAt                        <  2:1427990/140‑1 (MQ=255)

                                                                                                             agagCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAAt                        <  2:136453/140‑1 (MQ=255)

                                                                                                             agagCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAAt                        <  1:1051626/140‑1 (MQ=255)

                                                                                                             agagCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAAt                        <  2:301092/140‑1 (MQ=255)

                                                                                                               agCAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAg                      <  1:1027585/140‑1 (MQ=255)

                                                                                                                 cAGAATTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGcc                    >  2:571271/1‑140 (MQ=255)

                                                                                                                    aaTTAATGAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCtt                 >  1:299742/1‑140 (MQ=255)

                                                                                                                           gAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAgcgc          <  2:109572/140‑1 (MQ=255)

                                                                                                                           gAAAAAGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAgcgc          <  2:703841/140‑1 (MQ=255)

                                                                                                                            aaaaaGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAGcgcg         <  2:1083388/140‑1 (MQ=255)

                                                                                                                            aaaaaGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAGcgcg         <  1:1155178/140‑1 (MQ=255)

                                                                                                                            aaaaaGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAGcgcg         <  2:961314/140‑1 (MQ=255)

                                                                                                                            aaaaaGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAGcgcg         <  1:1205702/140‑1 (MQ=255)

                                                                                                                            aaaaaGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAGcgcg         <  2:861657/140‑1 (MQ=255)

                                                                                                                             aaaaGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAATAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAGCGCGt        <  1:569447/140‑1 (MQ=255)

                                                                                                                              aaggCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAGCGCGtt       <  2:430918/137‑1 (MQ=255)

                                                                                                                              aaaGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAGCGCGtt       <  1:87559/140‑1 (MQ=255)

                                                                                                                              aaaGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAGCGCGtt       <  2:830786/140‑1 (MQ=255)

                                                                                                                              aaaGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAGCGCGtt       <  2:206441/140‑1 (MQ=255)

                                                                                                                              aaaGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAGCGCGtt       <  2:1430159/140‑1 (MQ=255)

                                                                                                                                aGCACCCCCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAGCGCGTTTc     >  1:144008/1‑140 (MQ=255)

                                                                                                                                   acccccAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAGCGCGTTTCTta  <  1:458949/140‑1 (MQ=255)

ACATTACTTAATGAAATAAGAAAAGGCAGAGGCGATATAATCATTAGCACAATCACTGCATTATCATATCCCGGCCCTATACTTATTTTTACTAGTATAGATGCACCCAAGAGCAGAATTAATGAAAAAGCACCACCAATCAAACTCAAGCAGGTCAATGATTTTTTAATTAAAATCACACCCTTCACACGATTAAGAACAAGCGTACTTGATATTCTTGGGTATATTGCTTGGGTGATAGGATTTAATAGCCCTTGAAGCGCGTTTCTTA  >  NC_000913/2108548‑2108818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`