BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,987,685	T→C	G50G (GGT→GGC)	yqeH →	putative LuxR family transcriptional regulator YqeH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,987,685	0	T	C	100.0%	630.1 / NA	168	G50G (GGT→GGC)	yqeH	putative LuxR family transcriptional regulator YqeH
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (82/86); total (82/86)

Only 100 of 185 total aligned reads displayed.

TCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTATCTTGCAAGTACTGACATGGGGA  >  NC_000913/2987550‑2987821

tCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATcgtggcgtgg                                                                                                                                      <  1:1718986/140‑1 (MQ=255)

tCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATcgtggcgtgg                                                                                                                                      <  2:2376707/140‑1 (MQ=255)

tCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATcgtggcgtgg                                                                                                                                      <  1:1143929/140‑1 (MQ=255)

tCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATcgtggcgtgg                                                                                                                                      <  1:817664/140‑1 (MQ=255)

 cGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCgtggcgtggt                                                                                                                                     <  1:162385/140‑1 (MQ=255)

 cGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCgtggcgtggt                                                                                                                                     >  2:2031467/1‑140 (MQ=255)

  gTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTa                                                                                                                                    >  2:810874/1‑140 (MQ=255)

  gTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTa                                                                                                                                    <  2:1768856/140‑1 (MQ=255)

     ataAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGaa                                                                                                                                 >  2:1134463/1‑140 (MQ=255)

     ataAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGaa                                                                                                                                 <  1:1572991/140‑1 (MQ=255)

     ataAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGaa                                                                                                                                 <  2:544515/140‑1 (MQ=255)

     ataAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGaa                                                                                                                                 <  1:717157/140‑1 (MQ=255)

      taAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAg                                                                                                                                <  1:2276097/140‑1 (MQ=255)

       aaaaGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAgg                                                                                                                               >  2:1838741/1‑140 (MQ=255)

          aGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTAt                                                                                                                            >  1:1195649/1‑140 (MQ=255)

              ttACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTa                                                                                                                        >  1:1515533/1‑140 (MQ=255)

              ttACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTa                                                                                                                        >  2:2284172/1‑140 (MQ=255)

              ttACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTa                                                                                                                        >  1:2344897/1‑140 (MQ=255)

              ttACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTa                                                                                                                        >  1:970426/1‑140 (MQ=255)

                         aGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACca                                                                                                             <  2:1652396/140‑1 (MQ=255)

                         aGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACca                                                                                                             <  1:159993/140‑1 (MQ=255)

                         aGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACca                                                                                                             <  2:37958/140‑1 (MQ=255)

                              cTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATg                                                                                                        <  2:2385259/140‑1 (MQ=255)

                              cTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATg                                                                                                        <  2:2340327/140‑1 (MQ=255)

                                cAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCg                                                                                                      >  1:1202377/1‑140 (MQ=255)

                                  aTGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCgag                                                                                                    >  1:1901976/1‑140 (MQ=255)

                                   tGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCgaga                                                                                                   >  2:1281122/1‑140 (MQ=255)

                                   tGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCgaga                                                                                                   >  2:1136397/1‑140 (MQ=255)

                                   tGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCgaga                                                                                                   >  2:1586880/1‑140 (MQ=255)

                                       ttGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTaa                                                                                               <  2:322533/140‑1 (MQ=255)

                                        tGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAg                                                                                              <  2:1619976/140‑1 (MQ=255)

                                        tGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAg                                                                                              <  2:1748623/140‑1 (MQ=255)

                                        tGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAg                                                                                              <  1:1050113/140‑1 (MQ=255)

                                        tGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAg                                                                                              <  1:1838741/140‑1 (MQ=255)

                                        tGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAg                                                                                              <  1:2031467/140‑1 (MQ=255)

                                         gCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGc                                                                                             <  1:1586880/140‑1 (MQ=255)

                                            aaaTAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGa                                                                                          <  1:828822/140‑1 (MQ=255)

                                                  tGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATAtt                                                                                    >  2:2316025/1‑140 (MQ=255)

                                                    ccAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATAtttt                                                                                  >  1:428719/1‑140 (MQ=255)

                                                    ccAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATAtttt                                                                                  >  2:1868338/1‑140 (MQ=255)

                                                         agagTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCg                                                                             >  2:1392863/1‑140 (MQ=255)

                                                            gTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGAtt                                                                          >  2:698579/1‑140 (MQ=255)

                                                             tCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGAttt                                                                         >  1:1480269/1‑140 (MQ=255)

                                                             tCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGAttt                                                                         >  2:847616/1‑140 (MQ=255)

                                                              cACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGAtttt                                                                        <  2:418108/140‑1 (MQ=255)

                                                                  gcgTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAg                                                                    >  2:1235019/1‑140 (MQ=255)

                                                                   cgTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGt                                                                   <  2:428719/140‑1 (MQ=255)

                                                                       tGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGt                                                               >  1:288697/1‑140 (MQ=255)

                                                                       tGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGt                                                               >  2:1201579/1‑140 (MQ=255)

                                                                           gTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAGCAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGttttt                                                           <  1:1134463/140‑1 (MQ=255)

                                                                           gTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGttttt                                                           <  1:1239970/140‑1 (MQ=255)

                                                                           gTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGttttt                                                           <  2:1863435/140‑1 (MQ=255)

                                                                           gTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGttttt                                                           <  2:1615892/140‑1 (MQ=255)

                                                                           gTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGttttt                                                           <  1:2327472/140‑1 (MQ=255)

                                                                           gTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGttttt                                                           <  1:2316025/140‑1 (MQ=255)

                                                                             aTTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTa                                                         >  1:905958/1‑140 (MQ=255)

                                                                              ttGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGttttt                                                           <  1:549733/137‑1 (MQ=255)

                                                                              ttGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTAc                                                        >  1:205975/1‑140 (MQ=255)

                                                                                gcgcAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGt                                                      <  2:905958/140‑1 (MQ=255)

                                                                                 cgcAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTc                                                     >  2:2252438/1‑140 (MQ=255)

                                                                                   cAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTa                                                   <  2:266329/140‑1 (MQ=255)

                                                                                                 tGTATGTGGCCCGTAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGa                                     <  2:1549036/140‑1 (MQ=255)

                                                                                                 tGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGa                                     <  1:677952/140‑1 (MQ=255)

                                                                                                 tGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGa                                     <  2:1055619/140‑1 (MQ=255)

                                                                                                   tATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACt                                   <  1:2403597/140‑1 (MQ=255)

                                                                                                     tgtgGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTgg                                 >  1:1463998/1‑140 (MQ=255)

                                                                                                      gtgGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGa                                <  2:1480269/140‑1 (MQ=255)

                                                                                                      gtgGCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGa                                >  1:2288778/1‑140 (MQ=255)

                                                                                                        ggCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGAtt                              >  1:14958/1‑140 (MQ=255)

                                                                                                         gCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTg                             >  1:1784936/1‑140 (MQ=255)

                                                                                                         gCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTg                             >  2:1415731/1‑140 (MQ=255)

                                                                                                         gCCCGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTg                             >  2:2133306/1‑140 (MQ=255)

                                                                                                          cccGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGa                            >  2:1903261/1‑140 (MQ=255)

                                                                                                          cccGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGa                            <  1:1235019/140‑1 (MQ=255)

                                                                                                          cccGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGa                            >  2:2304650/1‑140 (MQ=255)

                                                                                                          cccGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGa                            >  1:1375056/1‑140 (MQ=255)

                                                                                                          cccGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGa                            <  2:497304/140‑1 (MQ=255)

                                                                                                          cccGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGa                            <  1:1543576/140‑1 (MQ=255)

                                                                                                          cccGAAGAAAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGa                            >  2:1329736/1‑140 (MQ=255)

                                                                                                             gaagaaAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTa                         >  2:241050/1‑140 (MQ=255)

                                                                                                              aagaaAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTTTATTCCTTGAAAAAGACTGGATTGACTAt                        <  2:1972823/140‑1 (MQ=255)

                                                                                                              aagaaAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTAt                        >  1:2235738/1‑140 (MQ=255)

                                                                                                              aagaaAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTAt                        <  2:1195649/140‑1 (MQ=255)

                                                                                                              aagaaAGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTAt                        <  1:1915047/140‑1 (MQ=255)

                                                                                                                  aaGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTATCTTg                    <  1:1415731/140‑1 (MQ=255)

                                                                                                                   aGTTCATATTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTATCTTGc                   <  1:908051/140‑1 (MQ=255)

                                                                                                                        atatTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTATCTTGCAAGTa              <  1:2304650/140‑1 (MQ=255)

                                                                                                                          atTTTAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTATCTTGCAAGTACt            >  1:109975/1‑140 (MQ=255)

                                                                                                                              tAATCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTATCTTGCAAGTACTGACa        <  2:1463998/140‑1 (MQ=255)

                                                                                                                               aaTCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTATCTTGCAAGTACTGACAt       >  2:315800/1‑140 (MQ=255)

                                                                                                                               aaTCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTATCTTGCAAGTACTGACAt       >  1:762250/1‑140 (MQ=255)

                                                                                                                               aaTCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTATCTTGCAAGTACTGACAt       <  1:391635/140‑1 (MQ=255)

                                                                                                                               aaTCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTATCTTGCAAGTACTGACAt       >  1:2424217/1‑140 (MQ=255)

                                                                                                                               aaTCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTATCTTGCAAGTACTGACAt       >  1:2217777/1‑140 (MQ=255)

                                                                                                                               aaTCGTGGCGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTATCTTGCAAGTACTGACAt       >  1:2109584/1‑140 (MQ=255)

                                                                                                                                    tggcgtggtAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTATCTTGCAAGTACTGACATGGGGa  <  2:2235738/140‑1 (MQ=255)

                                                                                                                                    tggcgtggtAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTATCTTGCAAGTACTGACATGGGGa  >  2:1424213/1‑140 (MQ=255)

                                                                                                                                    tggcgtggtAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTATCTTGCAAGTACTGACATGGGGa  <  2:1336135/140‑1 (MQ=255)

                                                                                                                                    tggcgtggtAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTATCTTGCAAGTACTGACATGGGGa  <  2:1104514/140‑1 (MQ=255)

                                                                                                                                    tggcgtggtAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTATCTTGCAAGTACTGACATGGGGa  <  2:894986/140‑1 (MQ=255)

TCGTTATAAAAGTCTTACATGCAATAGTTGCTCAATGCATTGCCAAATAATGCCAGAAGAGTCACCGCGTTTGCAGTATTGCGCAAACTCGTGTTTTTGTATGTGGCCCGAAGAAAGTTCATATTTTAATCGTGGTGTGGTAGAAGGTATCTTAACAAAAAACCACAATGCGAGATTAAGCGGATATATTTTTGTCGATTTTTCAGTAAGTTTTTTACGTCTATTCCTTGAAAAAGACTGGATTGACTATCTTGCAAGTACTGACATGGGGA  >  NC_000913/2987550‑2987821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`