Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG34.6% 281.2 / 36.5 164T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (21/85);  new base G (56/0);  total (79/85)
Fisher's exact test for biased strand distribution p-value = 2.65e-26
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 170 total aligned reads displayed.

GCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568365‑4568641
                                                                                                                                           |                                                                                                                                           
gcagGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGt                                                                                                                                             >  2:1114796/1‑140 (MQ=255)
    gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaa                                                                                                                                         >  1:106617/1‑140 (MQ=255)
         aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACGAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg                                                                                                                                    <  2:2053832/140‑1 (MQ=255)
         aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCGAGCGGGAAAATCAGCGTGGCGGCATGGCGGGTAAAAAAACg                                                                                                                                    <  1:525587/140‑1 (MQ=255)
         aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg                                                                                                                                    <  1:2102290/140‑1 (MQ=255)
           aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                  <  1:1002648/140‑1 (MQ=255)
           aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                  >  1:1844496/1‑140 (MQ=255)
              gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCa                                                                                                                               <  2:1660968/140‑1 (MQ=255)
              gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCa                                                                                                                               >  1:1546415/1‑140 (MQ=255)
               aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCAt                                                                                                                              >  2:802602/1‑140 (MQ=255)
                     gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaaa                                                                                                                        >  1:1562782/1‑140 (MQ=255)
                     gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaaa                                                                                                                        <  2:322756/140‑1 (MQ=255)
                     gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATaacaaa                                                                                                                        >  1:2270839/1‑140 (MQ=255)
                      cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATaacaaac                                                                                                                       >  1:42502/1‑140 (MQ=255)
                         tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAaacaac                                                                                                                    <  1:1361047/140‑1 (MQ=255)
                            aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                 <  1:1540211/140‑1 (MQ=255)
                            aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                 <  2:1603616/140‑1 (MQ=255)
                                aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGt                                                                                                             >  1:2028888/1‑140 (MQ=255)
                                aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGG‑AAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAAAAAAAAACCCCTTGTc                                                                                                            >  2:1391183/1‑140 (MQ=255)
                                 cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTc                                                                                                            <  2:1155524/140‑1 (MQ=255)
                                   tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCg                                                                                                          <  1:1732896/140‑1 (MQ=255)
                                   tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCg                                                                                                          <  1:2210605/140‑1 (MQ=255)
                                    aCCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCgg                                                                                                         <  2:1562782/140‑1 (MQ=255)
                                      cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGgag                                                                                                       <  1:2037249/140‑1 (MQ=255)
                                      cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGGATAACAAAAAACCCCTTGTCCGgag                                                                                                       >  2:156911/1‑140 (MQ=255)
                                            aaTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAAAAAAAAACTCCTTTTCCGGAG‑AAcccc                                                                                                >  2:1416771/1‑140 (MQ=255)
                                                  cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAACAAAAAAACCCTTGTCCGGAG‑AACCCCAAA‑ggg                                                                                         >  2:1541029/1‑140 (MQ=255)
                                                  cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAAAAACTCCTTTTCCGGGG‑AAACCCCAC‑ggg                                                                                         >  2:2091464/1‑140 (MQ=255)
                                                  cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAAAAAATCCTTGTCCGGGG‑AACCCCAAC‑ggg                                                                                         >  2:1712256/1‑140 (MQ=255)
                                                  cccAGGCTGGATCAGATCCGTCGACAGATACGCAACAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGAG‑AACCCCAAC‑ggg                                                                                         >  1:1715018/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGGATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑gggg                                                                                        >  1:1186946/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCTTTTCCGGAG‑AACCCCAAC‑gggg                                                                                        >  1:719756/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACACCTTGTCCGGAGAAACCCCAAC‑ggg                                                                                         >  2:531764/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCCTTTTCCGGAG‑AACCCCCAC‑gggg                                                                                        >  1:998433/1‑140 (MQ=255)
                                                    cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGa                                                                                       <  1:180073/140‑1 (MQ=255)
                                                       gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGGATAAAAAAAAACTCCTTATCCGGCG‑AAACCCCAC‑GGGGaaaa                                                                                    >  1:25316/1‑140 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACg                                                                                  <  2:883275/140‑1 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACg                                                                                  <  1:2091464/140‑1 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACg                                                                                  <  1:2055531/140‑1 (MQ=255)
                                                           gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGaa                                                                                <  1:1619774/140‑1 (MQ=255)
                                                            aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCATGGCCATCGGGAAAAACAGCGTGGCGGCACGACGGGAGAGAAAAAGAGGTATGAAAAAAAACTCCTTTTCCGGAG‑AAACCCAAC‑GGGGGAAACGaaa                                                                               >  2:1823281/1‑140 (MQ=255)
                                                            aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAAGGCATAAAAAAAAACACCTTGTCCGGAG‑AACCCCCAC‑CGGGGAAAAGaaa                                                                               >  2:1265694/1‑140 (MQ=255)
                                                            aTCAGATCCGTCGACAGATACACAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGaaa                                                                               >  1:68486/1‑140 (MQ=255)
                                                                  tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAAt                                                                         <  1:2316845/140‑1 (MQ=255)
                                                                     gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATAcc                                                                      >  1:1530695/1‑140 (MQ=255)
                                                                     gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAACAAAAAAATCCTTGTCCGGGG‑AACCCCCAC‑GGGGGAAAAGAAAATCaaaaac                                                                      >  2:76997/1‑136 (MQ=255)
                                                                      tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGCGGCAAAACAAAAAACTCCCTTTCCGGAG‑AACCCCCAC‑CGGGGAAAAGAAaataaataacc                                                                     >  2:982996/1‑137 (MQ=255)
                                                                       cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGt                                                                    <  1:1686860/140‑1 (MQ=255)
                                                                           aGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAAAGAAAATCAAAACCCTCggg                                                                >  2:386354/1‑139 (MQ=255)
                                                                            gATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTa                                                               <  2:1274157/140‑1 (MQ=255)
                                                                                  cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACg                                                         <  2:1317497/140‑1 (MQ=255)
                                                                                     caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAAAAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAAAGAAAATCAATACCGTCGGTAATGACGaaa                                                      >  2:729405/1‑140 (MQ=255)
                                                                                       aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCCTGTCCGGAG‑AAACCCAAC‑GGGGAAAACGAAAATCAATAACGTCGGGAATGACGAAAgg                                                    >  1:228720/1‑140 (MQ=255)
                                                                                       aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAAAAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGGAAAAGAAAATTAATACCGTCGGGAATGAAGaaaag                                                    >  2:1960825/1‑138 (MQ=255)
                                                                                        aGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGc                                                   <  1:930235/140‑1 (MQ=255)
                                                                                        aGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAAATCCTTGTCCGGGG‑AAACCCAAC‑GGGGAAAAAGAAAATCAAAACCGTCGGGAATGACGaaaagg                                                   >  2:1466141/1‑137 (MQ=255)
                                                                                           cATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGAGAAAAAAAATGGGCTAAAAAACAACCCCTTGTACCGAG‑GAACCCAACGGGGGAAAAACAAATT‑AAAACCGTCGGTAATGACGGAAAGCAgg                                                >  2:1981960/1‑140 (MQ=255)
                                                                                            aTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AAACCCCAC‑GGGGAAAACGAAAATCAATACCGTCGGTAATGACGAAAAGCAggg                                               >  2:1678666/1‑139 (MQ=255)
                                                                                             tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAAAAACTCCTTTTCCCGGG‑GACCCCAAC‑CGGGGAAAAAAAAATCAATACCCTCGGGAATGAATAAAGGCAgggg                                              >  2:17674/1‑138 (MQ=255)
                                                                                              aCAAAATCAACGCCATCGGG‑AAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag                                            <  1:1391183/140‑1 (MQ=255)
                                                                                               cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTACGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag                                            <  2:2028888/140‑1 (MQ=255)
                                                                                               cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAAATACTTTTCCGGAG‑AACCCCCAC‑GGGGAAAAAGAAAATCAATACCGTCGGGAATGACGAAAGGCAGGGgag                                            >  2:1552356/1‑140 (MQ=255)
                                                                                               cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGCAAAAAAACACGGCCCAACAAACAACCCCCTGTCCCGAG‑AACCCCCAC‑CGGGGAAACCAAAATCAAAACCCCCCGCAATGACGAAAAGCAGGGgag                                            >  2:1330034/1‑140 (MQ=255)
                                                                                                  aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAAACCCTTGTCCGGAG‑AACCCCAAC‑GGGGGAAAAAAAAATTAAAACCGTCGGGAAAGACGAAAAGCAGGGGGGaaa                                         >  2:1617141/1‑139 (MQ=255)
                                                                                                   aTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAAAAAAAAACTCCTTGTCCGGAG‑GACCCCAAC‑GGGGAAAACGAAAATCAAAACCGTCGGGAATGACGAAAAGCAGGGGGGAAgg                                        >  2:227936/1‑140 (MQ=255)
                                                                                                    tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAAACCCCTGTCCGGAG‑AAACCCCAC‑GGGGGAAAAGAAAATCAATACCCTCGGGAATGACGAAAAGCAAGGGAGAAagg                                       >  2:805476/1‑140 (MQ=255)
                                                                                                       aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaa                                    <  2:2317945/140‑1 (MQ=255)
                                                                                                        cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCCTTGTCCCGAG‑AAACCCCAC‑GGGGGAAAAGAAAATCAATACCGTCGGGGAAGACGAAAAGCAGGGGAGAAAGGGaaa                                   >  2:1264592/1‑139 (MQ=255)
                                                                                                          ccATCGGGAAAAACAGGGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACACCAAC‑GGGGAAAACGAAATTCAATTCCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  1:538309/140‑1 (MQ=255)
                                                                                                          ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  2:42502/140‑1 (MQ=255)
                                                                                                          ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  1:1255262/140‑1 (MQ=255)
                                                                                                          ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  2:1316778/140‑1 (MQ=255)
                                                                                                          ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  1:76997/140‑1 (MQ=255)
                                                                                                          ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  2:1517292/140‑1 (MQ=255)
                                                                                                             tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                              <  1:1960825/140‑1 (MQ=255)
                                                                                                             tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                              <  2:2226645/140‑1 (MQ=255)
                                                                                                              cGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAACAAATCCCTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACt                             >  2:3682/1‑140 (MQ=255)
                                                                                                                  aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                         <  2:1541773/140‑1 (MQ=255)
                                                                                                                       cAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACGCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTa                    <  2:1115223/140‑1 (MQ=255)
                                                                                                                        aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                   <  1:234776/140‑1 (MQ=255)
                                                                                                                        aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                   <  2:1226437/140‑1 (MQ=255)
                                                                                                                        aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                   <  1:627956/140‑1 (MQ=255)
                                                                                                                           gTGGCGGCATGGCGGGGAAAAAAAAGGGGGATAAAAAAAAACTCCTTGTCCGGAG‑AACCCCCAC‑GGGGGAAACGAAAATCAATACCGTCGGGAATGACGAAAAGCAGGGGAGAAGGGCAACGAGACTGCAAAAGTAATGa                >  2:1588584/1‑140 (MQ=255)
                                                                                                                            tGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGAG‑AACCCCCAC‑GGGGGAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGaa               >  2:2030175/1‑140 (MQ=255)
                                                                                                                                 gcATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCa          <  1:550978/140‑1 (MQ=255)
                                                                                                                                 gcATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCa          <  2:25316/140‑1 (MQ=255)
                                                                                                                                 gcATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCa          <  1:900307/140‑1 (MQ=255)
                                                                                                                                  cATGGCGGGGAAAAAAAAGGGGCATAACAAAAAACTCCTTGTCCGGGG‑AAACCCCAC‑GGGGGAAAAGAAAATTAATACCCTCGGGAATGAAGAAAAGGAGGGGAGAAGGGCAACGAGACTGCAAAAGTACTGAATTTTAt         >  2:512156/1‑140 (MQ=255)
                                                                                                                                    tGGCGGGTAAAAAAAAGTGGGATAAAAAAAAACTCCTTGTCCGGAG‑AACCCCCAA‑GGGGGAAAAGAAATTTAAAAACGTCGGGAATGAAGAAAAGGAGGGGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTTAttt       >  2:1940847/1‑138 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGTAG‑AACCCCAAC‑GGGGAAAACGAAAGTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:304679/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:398149/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:19859/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:17674/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  2:557031/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  2:656586/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  2:719756/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:157058/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:510840/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:2265135/140‑1 (MQ=255)
                                                                                                                                       cGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt    <  2:258096/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                           
GCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAAC‑GGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568365‑4568641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑