BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3831969 =	111 (1.030)	4 (0.040)	4/258	8.2	3.8%	coding (1513/1710 nt)	yicH	AsmA famly protein YicH
*	?	NC_000913	3832036 =	98 (0.980)	4 (0.040)	4/258	8.2	3.8%	coding (1580/1710 nt)	yicH	AsmA famly protein YicH
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 112 total aligned reads displayed.

AATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCATGCCGTGAACGCCGCAAAGCAGCAAGTGACTCAAA  >  NC_000913/3831831‑3832107

aaTATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATg                                                                                                                                           <  2:907014/140‑1 (MQ=255)

aaTATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATg                                                                                                                                           <  2:875745/140‑1 (MQ=255)

 atatCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATgg                                                                                                                                          <  2:690880/140‑1 (MQ=255)

  tatCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGc                                                                                                                                         <  1:575490/140‑1 (MQ=255)

  tatCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGc                                                                                                                                         <  1:632840/140‑1 (MQ=255)

  tatCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGc                                                                                                                                         <  2:1483644/140‑1 (MQ=255)

  tatCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGc                                                                                                                                         <  2:1526969/140‑1 (MQ=255)

  tatCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGc                                                                                                                                         <  1:1371312/140‑1 (MQ=255)

   atCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGcc                                                                                                                                        <  1:796938/140‑1 (MQ=255)

      aGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTTAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGa                                                                                                                                     >  2:1722643/1‑140 (MQ=255)

       gcaaaCGGAGTGCTTTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGaa                                                                                                                                    <  1:591800/137‑1 (MQ=255)

       gCGAACTGGGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGaa                                                                                                                                    <  2:207360/140‑1 (MQ=255)

       gCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGaa                                                                                                                                    <  1:329007/140‑1 (MQ=255)

       gCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGaa                                                                                                                                    <  2:1054877/140‑1 (MQ=255)

       gCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGaa                                                                                                                                    <  2:1517811/140‑1 (MQ=255)

        cGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAAt                                                                                                                                   <  2:861573/140‑1 (MQ=255)

        cGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAAt                                                                                                                                   <  2:768312/140‑1 (MQ=255)

        cGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAAt                                                                                                                                   >  1:1738885/1‑140 (MQ=255)

        cGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAAt                                                                                                                                   >  2:1604060/1‑140 (MQ=255)

        cGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTCCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAAt                                                                                                                                   >  2:1231826/1‑140 (MQ=255)

          aaCTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTa                                                                                                                                 >  1:1411930/1‑140 (MQ=255)

          aaCTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTa                                                                                                                                 >  2:1013502/1‑140 (MQ=255)

          aaCTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTa                                                                                                                                 >  1:1296720/1‑140 (MQ=255)

          aaCTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTa                                                                                                                                 >  2:689898/1‑140 (MQ=255)

          aaCTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTa                                                                                                                                 >  1:60826/1‑140 (MQ=255)

            cTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTAcc                                                                                                                               >  2:1236275/1‑140 (MQ=255)

              gAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCACAAACGCAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAAt                                                                                                                                   <  1:923239/140‑1 (MQ=255)

              gAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGt                                                                                                                             >  1:185144/1‑140 (MQ=255)

                    aTTTACTAAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTg                                                                                                                       <  2:1243399/140‑1 (MQ=255)

                      ttACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGc                                                                                                                     >  2:1526412/1‑140 (MQ=255)

                        aCTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGa                                                                                                                   <  2:1266565/140‑1 (MQ=255)

                         cTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGAc                                                                                                                  >  2:952345/1‑140 (MQ=255)

                         cTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGAc                                                                                                                  >  1:157189/1‑140 (MQ=255)

                           gAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACgg                                                                                                                <  1:1390979/140‑1 (MQ=255)

                           gAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACgg                                                                                                                <  2:1318765/140‑1 (MQ=255)

                           gAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACgg                                                                                                                <  2:1758846/140‑1 (MQ=255)

                           gAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTCCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACgg                                                                                                                <  1:1231826/140‑1 (MQ=255)

                             aaaaGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCa                                                                                                              <  2:60826/140‑1 (MQ=255)

                                 ggCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAatat                                                                                                          >  2:565026/1‑140 (MQ=255)

                                             gCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGc                                                                                              >  1:1200962/1‑140 (MQ=255)

                                             ccccccgccgGTTTTTAA‑‑‑‑‑‑AAAACCCCACAACGACAACCAAATACCAGCCTGAATGGACGCGGTGTCCCGGTGAATATTTTAAAACAGGGGGGATGGCCTGAATTCCCGTTGACTGGCGGCGCCAATATTCAGCTTACCGc                                                                                              <  2:1296720/136‑1 (MQ=255)

                                              cccccGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGGGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGcc                                                                                             <  1:131168/137‑1 (MQ=255)

                                              ccACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGcc                                                                                             <  2:185144/140‑1 (MQ=255)

                                                cccGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTCCCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAg                                                                                           <  2:170925/139‑1 (MQ=255)

                                                cccGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCAAAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAg                                                                                           <  2:290870/139‑1 (MQ=255)

                                                aCCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAg                                                                                           >  1:518568/1‑140 (MQ=255)

                                                aCCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAg                                                                                           >  1:907294/1‑140 (MQ=255)

                                                aCCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAg                                                                                           <  2:1411930/140‑1 (MQ=255)

                                                     cAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTCCCGCCAGTGGCg                                                                                      <  2:346026/140‑1 (MQ=255)

                                                     cAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCg                                                                                      <  1:952345/140‑1 (MQ=255)

                                                     cAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCg                                                                                      <  1:1236275/140‑1 (MQ=255)

                                                     cAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCg                                                                                      <  1:1162602/140‑1 (MQ=255)

                                                        tgtTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGata                                                                                   >  1:22197/1‑140 (MQ=255)

                                                           ttCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTc                                                                                <  2:249813/140‑1 (MQ=255)

                                                            tCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCa                                                                               >  1:1338873/1‑140 (MQ=255)

                                                                     caAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGc                                                                            >  2:887529/1‑140 (MQ=255)

                                                                        aCGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCaa                                                                         >  2:111361/1‑140 (MQ=255)

                                                                           ccACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGt                                                                      <  2:1200962/140‑1 (MQ=255)

                                                                           ccACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGt                                                                      <  1:111361/140‑1 (MQ=255)

                                                                            cacaCCGTCAGAAACATATCAGCTGGAATGGACGCGGTGTGCCGGTGAATATTTTGCACCAGGGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTc                                                                     <  2:369885/140‑1 (MQ=255)

                                                                                 cGTCAGACACATATCGGCCTGAATGGACGCGGTGTGCGGGTAAATATTTTGCAACGGTGGGGATGGCCTGATTTCCCGTGGACTGGCGACGGCAATTTTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGtt                                                                <  2:1338873/140‑1 (MQ=255)

                                                                                  gTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCC‑GAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGa                                                              <  2:1595956/140‑1 (MQ=255)

                                                                                      gACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAAc                                                           >  1:1287338/1‑140 (MQ=255)

                                                                                          caTATCAGCCGGAATGGACGCGGTGTGCCGGTAAATATTTTGCACGAGGGGGGATGGCCTAAATTACCGTGGCCGGCCGCCGCAAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTAc                                                       <  2:1241165/140‑1 (MQ=255)

                                                                                           atatCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACg                                                      >  2:1658528/1‑140 (MQ=255)

                                                                                             atCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGt                                                    >  2:521654/1‑140 (MQ=255)

                                                                                                aGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAg                                                 >  1:1279887/1‑140 (MQ=255)

                                                                                                 gCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGc                                                >  1:1418754/1‑140 (MQ=255)

                                                                                                 gCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGc                                                >  2:595671/1‑140 (MQ=255)

                                                                                                 gCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGc                                                >  1:1761230/1‑140 (MQ=255)

                                                                                                  ccagactGGACGGGGTGTGCCGGAAAATATTTTGAAACAGGGGGGATGGCCTGAATTACCGTCCACTGGCGGCGGCAATTTTCAGCTTTCCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCg                                               <  2:220716/134‑1 (MQ=255)

                                                                                                     gAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGTAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGCCCCGTTGAAACCTACGGTTAGCGGGc                                            >  1:353194/1‑140 (MQ=255)

                                                                                                     gAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGc                                            >  1:961436/1‑140 (MQ=255)

                                                                                                     gAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGc                                            >  1:1075612/1‑140 (MQ=255)

                                                                                                     gAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGc                                            >  2:333023/1‑140 (MQ=255)

                                                                                                     gAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGc                                            >  1:378682/1‑140 (MQ=255)

                                                                                                     gAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGc                                            >  2:1750271/1‑140 (MQ=255)

                                                                                                      aaTGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGACCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCa                                           >  2:597722/1‑140 (MQ=255)

                                                                                                           aCGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGc                                      >  1:449884/1‑140 (MQ=255)

                                                                                                           aCGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGc                                      <  1:1604060/140‑1 (MQ=255)

                                                                                                            cgcgGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCa                                     <  1:1750271/140‑1 (MQ=255)

                                                                                                             gcgGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCAt                                    <  1:887529/140‑1 (MQ=255)

                                                                                                             gcgGTGTGCCGGTGAATATTTTGCAACAGGGGGGAGGGCCTGAATTCCCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCAt                                    <  2:322159/140‑1 (MQ=255)

                                                                                                                gtgtGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCATGcc                                 >  1:734584/1‑140 (MQ=255)

                                                                                                                gtgtGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCATGcc                                 >  2:171512/1‑140 (MQ=255)

                                                                                                                gtgtGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCATGcc                                 >  1:1676372/1‑140 (MQ=255)

                                                                                                                gtgtGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCATGcc                                 >  2:349701/1‑140 (MQ=255)

                                                                                                                   tgCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCATGCCGTg                              <  1:171512/140‑1 (MQ=255)

                                                                                                                           aaTATTTCGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGCCCAATGTCCCGTTGAAACCTACGGTCAGCGGGCAATTGCATGCCGTGAAcgccgc                      >  2:738650/1‑140 (MQ=255)

                                                                                                                               ttttGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCATGCCGTGAACGCCGCAAag                  >  2:396242/1‑140 (MQ=255)

                                                                                                                                 ttGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCATGCCGTGAACGCCGCAAagca                <  2:1075612/140‑1 (MQ=255)

                                                                                                                                     aaCAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCATGCCGTGAACGCCGCAAAGCAGCaa            <  1:1722643/140‑1 (MQ=255)

                                                                                                                                           ggggATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCATGCCGTGAACGCCGCAAAGCAGCAAGTGACt      <  1:521654/140‑1 (MQ=255)

                                                                                                                                            gggATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCATGCCGTGAACGCCGCAAAGCAGCAAGTGACTc     >  2:626794/1‑140 (MQ=255)

                                                                                                                                             ggttGGCCTGAATTACCGTTGATTGGCGACGGTAATATTCGGATTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCATGCCGTGAACGCCGCAAAGCAGCAAGTGACTCa    <  2:353194/137‑1 (MQ=255)

                                                                                                                                             ggATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCATGCCGTGAACGCCGCAAAGCAGCAAGTGACTCa    <  1:1507442/140‑1 (MQ=255)

                                                                                                                                             ggATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCATGCCGTGAACGCCGCAAAGCAGCAAGTGACTCa    <  1:396242/140‑1 (MQ=255)

                                                                                                                                              gATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCATGCCGTGAACGCCGCAAAGCAGCAAGTGACTCaa   <  1:595671/140‑1 (MQ=255)

                                                                                                                                              gATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCATGCCGTGAACGCCGCAAAGCAGCAAGTGACTCaa   <  2:907294/140‑1 (MQ=255)

                                                                                                                                               aTGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCATGCCGTGAACGCCGCAAAGCAGCAAGTGACTCaaa  <  1:497161/140‑1 (MQ=255)

AATATCAGCGAACTGAGTGCATTTACTGAAAAAGGCATTCTGGAAGCCACCGCCAGTGTTTCA‑‑‑‑‑‑CAAACGCCACAACGTCAGACACATATCAGCCTGAATGGACGCGGTGTGCCGGTGAATATTTTGCAACAGTGGGGATGGCCTGAATTACCGTTGACTGGCGACGGCAATATTCAGCTTACCGCCAGTGGCGATATTCAGGCCAATGTCCCGTTGAAACCTACGGTTAGCGGGCAATTGCATGCCGTGAACGCCGCAAAGCAGCAAGTGACTCAAA  >  NC_000913/3831831‑3832107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.