BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	291,457	T→G	intergenic (‑111/‑43)	insA‑3 ← / → yagJ	IS1 protein InsA/CP4‑6 prophage; protein YagJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	291,457	0	T	G	100.0%	421.5 / NA	113	intergenic (‑111/‑43)	insA‑3/yagJ	IS1 protein InsA/CP4‑6 prophage; protein YagJ
Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (57/56); total (57/56)

Only 100 of 114 total aligned reads displayed.

GGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAGGCCGATAGACTGGCGAAGGCGTGGC  >  NC_000913/291320‑291593

gggACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGc                                                                                                                                        >  1:578441/1‑140 (MQ=255)

 ggACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCg                                                                                                                                       >  1:1560977/1‑140 (MQ=255)

    cAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGAt                                                                                                                                    <  1:1028695/140‑1 (MQ=255)

    cAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGAt                                                                                                                                    <  2:561827/140‑1 (MQ=255)

        tGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCgag                                                                                                                                >  2:1680271/1‑140 (MQ=255)

        tGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCgag                                                                                                                                >  1:220107/1‑140 (MQ=255)

            aGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGagaaga                                                                                                                            <  2:350751/140‑1 (MQ=255)

              aaaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAgg                                                                                                                          <  2:1111067/140‑1 (MQ=255)

                 cAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATg                                                                                                                       <  1:218656/140‑1 (MQ=255)

                 cAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATg                                                                                                                       <  2:1785528/140‑1 (MQ=255)

                  aGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGc                                                                                                                      >  2:735090/1‑140 (MQ=255)

                  aGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGc                                                                                                                      <  1:285035/140‑1 (MQ=255)

                  aGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGc                                                                                                                      <  2:1621165/140‑1 (MQ=255)

                   gAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCa                                                                                                                     <  1:498244/140‑1 (MQ=255)

                    aaGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCag                                                                                                                    >  1:1815180/1‑140 (MQ=255)

                      gCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCagag                                                                                                                  <  2:1532841/140‑1 (MQ=255)

                       ccACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAgg                                                                                                                 <  1:540538/140‑1 (MQ=255)

                        cACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGa                                                                                                                <  2:687155/140‑1 (MQ=255)

                        cACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGa                                                                                                                <  1:1573308/140‑1 (MQ=255)

                         aCTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCTAGAAGAGGATGCAGAGGa                                                                                                                >  1:255644/1‑139 (MQ=255)

                         aCTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCTAGAAGAGGATGCAGAGGa                                                                                                                <  2:255644/139‑1 (MQ=255)

                         aCTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGGTGCAGAGGaa                                                                                                               >  2:487827/1‑140 (MQ=255)

                         aCTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGaa                                                                                                               >  1:1114226/1‑140 (MQ=255)

                          cTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAat                                                                                                              <  2:573721/140‑1 (MQ=255)

                           tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAata                                                                                                             >  1:1294071/1‑140 (MQ=255)

                             gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATc                                                                                                           <  1:349019/140‑1 (MQ=255)

                                 aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGa                                                                                                       <  1:884770/140‑1 (MQ=255)

                                  ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGaa                                                                                                      >  1:403387/1‑140 (MQ=255)

                                   cTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAg                                                                                                     <  2:1815250/140‑1 (MQ=255)

                                    tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGc                                                                                                    <  1:1565316/140‑1 (MQ=255)

                                    tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGc                                                                                                    <  1:1345320/140‑1 (MQ=255)

                                    tCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGc                                                                                                    <  2:425405/140‑1 (MQ=255)

                                      aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCaa                                                                                                  <  2:1560977/140‑1 (MQ=255)

                                      aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCaa                                                                                                  <  2:11821/140‑1 (MQ=255)

                                           cacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATg                                                                                             <  1:339462/140‑1 (MQ=255)

                                           cacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATg                                                                                             >  1:378939/1‑140 (MQ=255)

                                             ccATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGATGATGCAGAGGAATATCTGGAAGCAATCATGGa                                                                                           >  2:511119/1‑140 (MQ=255)

                                              catcatACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAg                                                                                          <  2:1413605/140‑1 (MQ=255)

                                              catcatACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAg                                                                                          <  1:1550462/140‑1 (MQ=255)

                                               atcatACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAgg                                                                                         >  2:306746/1‑140 (MQ=255)

                                               atcatACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAgg                                                                                         <  1:735090/140‑1 (MQ=255)

                                                      acTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGc                                                                                                    <  1:482791/122‑1 (MQ=255)

                                                        tAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTa                                                                                <  2:378939/140‑1 (MQ=255)

                                                          aaTCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTAcc                                                                              >  1:504156/1‑140 (MQ=255)

                                                          aaTCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTAcc                                                                              >  2:1736789/1‑140 (MQ=255)

                                                          aaTCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTAcc                                                                              >  2:691325/1‑140 (MQ=255)

                                                           aTCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCg                                                                             >  1:1266160/1‑140 (MQ=255)

                                                           aTCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCg                                                                             >  1:870453/1‑140 (MQ=255)

                                                               gTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGc                                                                         <  2:129719/140‑1 (MQ=255)

                                                               gTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGc                                                                         <  1:976096/140‑1 (MQ=255)

                                                               gTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGc                                                                         >  1:962033/1‑140 (MQ=255)

                                                                tAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCt                                                                        <  1:1248071/140‑1 (MQ=255)

                                                                tAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCt                                                                        >  2:1776699/1‑140 (MQ=255)

                                                                  aGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTgg                                                                      >  2:785749/1‑140 (MQ=255)

                                                                    ttGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCa                                                                    <  1:785749/140‑1 (MQ=255)

                                                                    ttGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCa                                                                    <  1:1067193/140‑1 (MQ=255)

                                                                      ggCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATg                                                                  >  1:1144241/1‑140 (MQ=255)

                                                                        cagcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATggg                                                                <  2:1614765/140‑1 (MQ=255)

                                                                        cagcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATggg                                                                <  1:306746/140‑1 (MQ=255)

                                                                         agcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATgggg                                                               <  1:966642/140‑1 (MQ=255)

                                                                         agcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATgggg                                                               <  1:780992/140‑1 (MQ=255)

                                                                         agcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATgggg                                                               <  2:503036/140‑1 (MQ=255)

                                                                         agcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATgggg                                                               <  2:578441/140‑1 (MQ=255)

                                                                          gcaTCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGc                                                              <  1:1406299/140‑1 (MQ=255)

                                                                             tCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTgg                                                           <  1:1736789/140‑1 (MQ=255)

                                                                              cACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGt                                                          >  2:1061997/1‑140 (MQ=255)

                                                                              cACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGt                                                          >  1:459693/1‑140 (MQ=255)

                                                                                ccGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGa                                                        >  2:1734508/1‑140 (MQ=255)

                                                                                   aaTTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATgg                                                     <  2:870453/140‑1 (MQ=255)

                                                                                        tCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTg                                                >  1:1495525/1‑140 (MQ=255)

                                                                                        tCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTg                                                <  2:1179290/140‑1 (MQ=255)

                                                                                           gCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAg                                             >  2:1554009/1‑140 (MQ=255)

                                                                                                 aTGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTAc                                       >  1:1254656/1‑140 (MQ=255)

                                                                                                     ttCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCg                                   <  2:220107/140‑1 (MQ=255)

                                                                                                      tCACGTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGa                                  <  2:1716103/140‑1 (MQ=255)

                                                                                                          gTACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGc                              <  1:1554009/140‑1 (MQ=255)

                                                                                                           tACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCg                             <  1:1394215/140‑1 (MQ=255)

                                                                                                           tACCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCg                             >  1:499202/1‑140 (MQ=255)

                                                                                                            aCCTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGa                            >  1:611272/1‑140 (MQ=255)

                                                                                                             ccTATGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAg                           >  1:1634385/1‑140 (MQ=255)

                                                                                                             ccTATGTCGAATATCTGACCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAg                           >  2:716099/1‑140 (MQ=255)

                                                                                                                aTGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAGGcc                        >  1:678148/1‑140 (MQ=255)

                                                                                                                 tGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAGGCCg                       >  1:1092455/1‑140 (MQ=255)

                                                                                                                 tGTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAGGCCg                       >  1:557969/1‑140 (MQ=255)

                                                                                                                  gTCGAATATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAGGCCGa                      <  1:1061997/140‑1 (MQ=255)

                                                                                                                     gAATACCTGGCCGTTAAGGTGGAGGATCGTGAAGAGGGTGCAGAGGAATATCTGCAAGCGACCGTGGAGGCTCGTGTTGCCGTTGCTGGCATTGGTCTGGTGATGGAGGTGCAGGATTATTTCGATGGCGAGGCCGATAg                   <  2:266165/140‑1 (MQ=255)

                                                                                                                      aaTATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAGGCCGATAGa                  <  2:607735/140‑1 (MQ=255)

                                                                                                                      aaTATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAGGCCGATAGa                  >  1:1042060/1‑140 (MQ=255)

                                                                                                                      aaTATCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTACTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAGGCCGATAGa                  >  1:797182/1‑140 (MQ=255)

                                                                                                                        tatCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAGGCCGATAGACt                >  1:1118978/1‑140 (MQ=255)

                                                                                                                        tatCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAGGCCGATAGACt                >  2:780713/1‑140 (MQ=255)

                                                                                                                        tatCTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAGGCCGATAGACt                >  1:597264/1‑140 (MQ=255)

                                                                                                                           cTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAGGCCGATAGACTGGc             <  1:408369/140‑1 (MQ=255)

                                                                                                                           cTGGCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAGGCCGATAGACTGGc             <  2:1294071/140‑1 (MQ=255)

                                                                                                                             ggCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAGGCCGATAGACAGGCGa           >  2:1765186/1‑140 (MQ=255)

                                                                                                                             ggCCGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGCGTTACCGTTGCTGGCATGGGGCTGGGGATGGAGGTGCAGGGTTACTTCGATGGCGAGGCCGATAGACTGGCGa           >  2:1063249/1‑140 (MQ=255)

                                                                                                                               ccGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAGGCCGATAGACTGGCGAAg         <  2:1634385/140‑1 (MQ=255)

                                                                                                                                cGATAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAGGCCGATAGACTGGCGAAgg        >  2:1067013/1‑140 (MQ=255)

                                                                                                                                  aTAAGGTGGCGGATCGAGAAGAGGATGCAGAGGAACATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAGGCCGATAGACTGGCGAAGGCg      >  1:694945/1‑140 (MQ=255)

                                                                                                                                      ggTGGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAGGCCGATAGACTGGCGAAGGCGtggc  <  2:1092455/140‑1 (MQ=255)

GGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAATTTTCAGCCCGGATGTTTCACGTACCTATGTCGAATATCTGGCCGATAAGGTTGCGGATCGAGAAGAGGATGCAGAGGAATATCTGGAAGCAATCATGGAGGCTCGTGTTACCGTTGCTGGCATGGGGCTGGTGATGGAGGTGCAGGATTACTTCGATGGCGAGGCCGATAGACTGGCGAAGGCGTGGC  >  NC_000913/291320‑291593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`