| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,275,611 | 0 | A | C | 21.5% | 187.6 / 10.8 | 79 | E110D (GAA→GAC) | garD | galactarate dehydratase |
| Reads supporting (aligned to +/- strand): ref base A (47/15); new base C (0/17); total (47/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.08e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TGAAATTATTCGTTATGGCGAAGTGATTGGTTACGCCGTGCGTGCAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGACTATGTAGTAAAAATCATTG > NC_000913/3275473‑3275750 | tGAAATTATTCGTTATGGCGAAGTGATTGGTTACGCCGTGCGTGCAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAAc > 1:2259903/1‑140 (MQ=255) gAAATTATTCGTTATGGCGAAGTGATTGGTTACGCCGTGCGTGCAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAAcc > 1:244691/1‑140 (MQ=255) ttCGTTATGGCGAAGTGATTGGTTACGCCGTGCGTGCAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTAccg > 1:2193858/1‑140 (MQ=255) tggTTAGGGCAAAGTGTTTGGTTCCGCCGTGCGTGAAACCCCACGGGGAAGCTGGATCGACAAATAAATGTTTGTACTCCCGGAGGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑CCCCGGACCCC‑TTAccgc < 2:1243644/138‑1 (MQ=255) ttATGGCGAAGTGATTGGTTACGCCGTGCGTGCAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACcgccgc > 1:2270376/1‑140 (MQ=255) gggCGAGGTGTTTGTTTACGCGGGGCGTCCAACCCCCCGGGGAAGCTGGATCGACAAATAAATGTTTTTCCTCCGGGAGGCCCCGCCGTTACACCCGCTGCCACTGGCAACCAAAG‑CCCCGGACCCC‑TTACCGCCGCTgg < 2:2103688/139‑1 (MQ=255) ggCGAAGTGATTGGTTACGCCGTGCGTGCAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGTCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGa > 1:484800/1‑140 (MQ=255) gggaggtgtTTGTTTCCCCCGGGCGTGCAACCCCCCGCGGAGGCGGGACCGACGAACAAATGGTTTTACACCGGGAGGCGCCGCCGTTACACCCGCTGCCACTGGCAACCAAAG‑TCCCGGACCCC‑TTACCGCCGCTGGaa < 2:1040898/135‑1 (MQ=255) gagAAGTGATTGTTCCCGCCGTGCGTGCAACCCCCCGCGGAAGCGGGATCGACAAATCAATGTTTGTACTCCCGGAGGCGCCGCCGTTCCACCCGCTCCCACTGGCAACCAAAG‑TCCCGGACCCC‑TTACCGCCGCTGGaa < 2:568310/138‑1 (MQ=255) gCGAAGTGATTGGTTACGCCGTGCGTGCAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGaa > 1:573470/1‑140 (MQ=255) aGTGATTGGTTACGCCGTGCGTGCAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGaactgt > 1:1014764/1‑136 (MQ=255) gTGATTGGTTACGCCGTGCGTGCAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATa > 2:1902483/1‑140 (MQ=255) gttGGTTCCCCCGTGCGTCAAACCCCCCGCGGAAGCGGGACCGACAAATAAATGGTTGTCCTCCGGGAGGCCCCGCCGTTACCCACGCTGCCACTGGCAACCAAAG‑CCCCGGACCCC‑TTACCGCCGCTGGAAGGATacac < 2:1842592/139‑1 (MQ=255) aTTGGTTACGCCGTGCGTGCAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCAGAACCC‑TTACCGCCACTGGAAGGATacac > 1:612545/1‑140 (MQ=255) ccgcgGTGCGTGCAACCCCCCGGGGAGGCTGGATCGACAAATAAATGTTTTTACTCCCGGAGGCGCCGCCGTTACACACGCTGCCCCTGGCAACCAAAG‑CCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAg < 2:1418371/139‑1 (MQ=255) cGCCGTGCGTGCAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAgg > 2:974235/1‑140 (MQ=255) ccGTGCGTGCAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGc > 2:2016085/1‑140 (MQ=255) ccGTGCGTGCAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGc > 2:1141203/1‑140 (MQ=255) tgcgtgcAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTAt > 1:1370990/1‑140 (MQ=255) gcgtgcAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAATGATACACCTTTGAGGGCTATc > 1:1281367/1‑140 (MQ=255) gcgtgcAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATc > 1:1649227/1‑140 (MQ=255) gcgtgcAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATc > 2:956359/1‑140 (MQ=255) gcgtgcAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATc > 1:2039681/1‑140 (MQ=255) cgtgcAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCg > 1:1016224/1‑140 (MQ=255) cgtgcAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCg > 1:654456/1‑140 (MQ=255) cgtgcAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCg > 2:1042662/1‑140 (MQ=255) ggcAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTCCTCCCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑CCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCa < 1:577349/139‑1 (MQ=255) ggaaaccccACGGGAAAGCTGGACCGACAAATAAATGTTTGTACTCCGGGAGGCCCCGCCGTTACACACGCTGCCACTGGCAACAAAAG‑TCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCa < 2:1260310/134‑1 (MQ=255) gccAACCCCCCGGGGAGGCGGGATCGACAAATAAAGGGTTGTCCTCCCGGAGGCCCCGCCGTTACACCCGCTGCTACTGGCAACCAAAG‑TCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCa < 2:128066/138‑1 (MQ=255) cgcgGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATgg > 1:179203/1‑140 (MQ=255) cgcgGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATgg > 1:1012384/1‑140 (MQ=255) cgcgGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGAAATGCCGATgg > 2:1123329/1‑140 (MQ=255) cgcgGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCACCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATgg > 1:1049482/1‑140 (MQ=255) aaGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCg > 1:1647719/1‑140 (MQ=255) aaGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCg > 1:1602487/1‑140 (MQ=255) gATCGATGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCa > 1:702735/1‑140 (MQ=255) gacgaATCTATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCaa > 1:1767208/1‑140 (MQ=255) gacgaATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCaa > 2:527200/1‑140 (MQ=255) cgaATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCaaaa > 2:381722/1‑140 (MQ=255) aaTAAATGTTTGTACTCCGGGAGGCCCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑CCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAAc < 2:1286793/140‑1 (MQ=255) aaTGTTTGTACTCCCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACAAAAG‑TCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGc < 1:1223728/140‑1 (MQ=255) aaTGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑CCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGc < 1:1226073/140‑1 (MQ=255) tgtttGTACTCCGGGAGGCCCCGCCTTTCCCCCCGCCGCCACGGGCAACCAAGG‑CCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTc < 2:1647719/137‑1 (MQ=255) gtttGTCCTCCGGGACGCGCCGCCGTTACACCCGCTGCCACTGGCAACAAAAG‑CCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCg < 2:1196235/138‑1 (MQ=255) gTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTAt > 2:122605/1‑140 (MQ=255) tactacCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATc > 2:2168362/1‑140 (MQ=255) tactacCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATc > 2:1601127/1‑140 (MQ=255) ctccgggAGGCCCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATcac < 2:968501/135‑1 (MQ=255) cccGGAGGCCCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑CCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATcacca < 2:697361/139‑1 (MQ=255) cgataGCCCCGCCTTACCAAACGCATCCATTGGC‑ACCAAAGCTCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGTTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCaccacc < 2:1467520/136‑1 (MQ=255) cGGAAGCCCCGCCTTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCaccacc < 1:753711/140‑1 (MQ=255) ggAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCAccacca > 2:1738999/1‑140 (MQ=255) aggccccgccgTTACACCCGCTGCCACGGGCAACCAAAG‑CCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGc < 1:899699/135‑1 (MQ=255) cgccgcCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTc < 1:398011/140‑1 (MQ=255) ccccgccgTTACCCACGCTGCCACTGGCAACCAAAG‑CCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTc < 2:1649227/138‑1 (MQ=255) ccccgccgTTACACCCGCTGCCACTGGCAACCAAAG‑CCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTc < 2:591924/138‑1 (MQ=255) gccgccGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTcc > 1:507222/1‑140 (MQ=255) gccgccGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTcc > 2:633406/1‑140 (MQ=255) cgccgTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCAc > 1:964956/1‑140 (MQ=255) gccttaccacccGCGGCCAC‑GGCAAACAAAA‑GCCCCAAACCCTTTACCGCCACTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACt < 2:612545/133‑1 (MQ=255) cggTTACACGCGCTTTCACTGCCAACCAAAG‑TCCCGGACCCT‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACtg < 2:484800/138‑1 (MQ=255) cacacGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCACCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGc < 2:1049482/140‑1 (MQ=255) cacGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAg < 2:1012384/140‑1 (MQ=255) cacGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAg < 1:956359/140‑1 (MQ=255) gCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCg > 2:1037676/1‑140 (MQ=255) cTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCgt > 1:1169439/1‑140 (MQ=255) tGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCgtg < 2:1602487/140‑1 (MQ=255) tGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCgtg > 2:447022/1‑140 (MQ=255) ggCCCCTGGCAACAAAAG‑CCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCgtg < 2:573470/139‑1 (MQ=255) gcccACTGGCAACCAAAG‑CCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCgtg < 2:1747335/138‑1 (MQ=255) cgCCAGTGCCAACCAAGC‑TCCGGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCgtg < 2:1767208/139‑1 (MQ=255) cgCCACTGGCAACCAAAG‑TCCCGGACCCT‑TTACCGCCGCTGGAAGGATTCACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCgtg < 1:974235/139‑1 (MQ=255) ttGGCAGCCAAAG‑TCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGa < 2:86980/139‑1 (MQ=255) cTGGCAACCAAAG‑TCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGa < 1:1141203/140‑1 (MQ=255) cTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGa < 1:1902483/140‑1 (MQ=255) cTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGa < 1:1042662/140‑1 (MQ=255) cTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGa < 1:381722/140‑1 (MQ=255) cTGGCAACCAAAG‑CCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGa < 1:1654430/140‑1 (MQ=255) cTGGCAACAAAAG‑TCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCATCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGa < 1:44686/140‑1 (MQ=255) cTGCCAACCAAAG‑CCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGa < 2:2044061/140‑1 (MQ=255) tGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGAc > 2:1387157/1‑140 (MQ=255) ggCAACCAAAG‑TCCCGGACCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGACt < 1:51119/140‑1 (MQ=255) gCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGa < 2:2168420/137‑1 (MQ=255) gCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGa > 1:2168420/1‑137 (MQ=255) cAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGACTAt < 1:527200/140‑1 (MQ=255) ccAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGACTATg > 1:149553/1‑138 (MQ=255) ccAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGACTATg < 2:149553/138‑1 (MQ=255) aaaG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGACTATgtagt < 1:2016085/140‑1 (MQ=255) tCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGACTATGTAGTaaaa > 1:255659/1‑140 (MQ=255) tCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACC‑AAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGACTATGTAGTaaaaa > 1:1587284/1‑140 (MQ=255) cccGGACCCC‑TAACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGACTATGTAGTaaaaa < 1:1123329/140‑1 (MQ=255) cccGGAACCC‑TTACCGCCGCTGGAATGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGACTATGTAGTaaaaa < 2:1281367/140‑1 (MQ=255) ggAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGACTATGTAGTAAAAATCa < 1:122605/140‑1 (MQ=255) ggAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTAGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGACTATGTAGTAAAAATCa > 2:261537/1‑140 (MQ=255) gAACCC‑TTACCGCCGCTGGAAGTATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGACTATGTAGTAAAAATCAt > 1:67557/1‑140 (MQ=255) gAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGACTATGTAGTAAAAATCAt < 1:1601127/140‑1 (MQ=255) aCCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGACTATGTAGTAAAAATCATTg < 2:507222/140‑1 (MQ=255) | TGAAATTATTCGTTATGGCGAAGTGATTGGTTACGCCGTGCGTGCAATCCCACGCGGAAGCTGGATCGACGAATCAATGGTTGTACTACCGGAAGCGCCGCCGTTACACACGCTGCCACTGGCAACCAAAG‑TCCCGGAACCC‑TTACCGCCGCTGGAAGGATACACCTTTGAGGGCTATCGCAATGCCGATGGCAGCGTGGGCACCAAAAACCTGCTCGGTATCACCACCAGCGTCCACTGTGTGGCAGGCGTGGTGGACTATGTAGTAAAAATCATTG > NC_000913/3275473‑3275750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |