Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,926,3660AC20.8% 336.4 / 37.6 149G30G (GGT→GGG) mioCflavoprotein MioC
Reads supporting (aligned to +/- strand):  ref base A (85/33);  new base C (0/31);  total (85/64)
Fisher's exact test for biased strand distribution p-value = 1.80e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 162 total aligned reads displayed.

TCTGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGT  >  NC_000913/3926227‑3926503
                                                                                                                                            |                                                                                                                                         
 cTGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAAc                                                                                                                                          <  2:1989164/140‑1 (MQ=255)
  tGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAAcc                                                                                                                                         >  1:313950/1‑140 (MQ=255)
    ttCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGCCCGTGCAGCGTTTCGGTGGTAAAACCCg                                                                                                                                       <  1:1822216/140‑1 (MQ=255)
    ttCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCg                                                                                                                                       <  2:2035264/140‑1 (MQ=255)
     tCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCCCCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGc                                                                                                                                      <  1:56918/140‑1 (MQ=255)
     tCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGc                                                                                                                                      <  2:1221587/140‑1 (MQ=255)
      ccTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGcc                                                                                                                                     >  1:200182/1‑140 (MQ=255)
         gCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCctct                                                                                                                                  >  2:287011/1‑140 (MQ=255)
            aTGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATACCCAGCCAGACCCCTGAGGCAGGAAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAACCCCGCCTCTTcc                                                                                                                               <  2:940209/140‑1 (MQ=255)
            aTGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTcc                                                                                                                               >  2:16958/1‑140 (MQ=255)
            aTGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTcc                                                                                                                               >  1:623532/1‑140 (MQ=255)
             tGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGGGGTAAAACCCGCCTCTTCCa                                                                                                                              <  2:83551/140‑1 (MQ=255)
              gCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAg                                                                                                                             >  1:1039288/1‑140 (MQ=255)
                ttCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAACCCCGCCTCTTCCAGCt                                                                                                                           <  2:21915/140‑1 (MQ=255)
                ttCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCt                                                                                                                           <  2:191011/140‑1 (MQ=255)
                     agaaaggagaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCa                                                                                                                      <  2:1143246/140‑1 (MQ=255)
                       aaaggagaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGc                                                                                                                    >  1:877109/1‑140 (MQ=255)
                        aaggagaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGcc                                                                                                                   <  1:769859/140‑1 (MQ=255)
                          ggagaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAg                                                                                                                 <  2:200182/140‑1 (MQ=255)
                           gagaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTTATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAgg                                                                                                                >  2:190792/1‑140 (MQ=255)
                           gagaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAgg                                                                                                                <  1:796716/140‑1 (MQ=255)
                           gagaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAgg                                                                                                                <  1:1087164/140‑1 (MQ=255)
                            agaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAggg                                                                                                               >  2:807910/1‑139 (MQ=255)
                            agaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAggg                                                                                                               >  1:1359625/1‑139 (MQ=255)
                            agaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAggg                                                                                                               >  2:1641097/1‑139 (MQ=255)
                            agaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAggg                                                                                                               >  2:1290561/1‑139 (MQ=255)
                            agaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGgt                                                                                                               >  2:472974/1‑140 (MQ=255)
                             gaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGgtg                                                                                                              <  2:1812474/140‑1 (MQ=255)
                             gaaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGgtg                                                                                                              <  1:2134930/140‑1 (MQ=255)
                              aaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCATCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCCTGCAGCGTTTCCGTGGTAAAAACCGCCTCTTCCAGCCTTTCAGCCAGgtgt                                                                                                             >  2:877055/1‑140 (MQ=255)
                              aaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGgtgt                                                                                                             >  2:868631/1‑140 (MQ=255)
                              aaaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGgtgt                                                                                                             >  1:490127/1‑140 (MQ=255)
                               aaggTTGTCGGGAATAACTCCGGCACCGGGGGTGGAGTTAAAACCAAGCGAGACCCCTGA‑GCAGGATAATCATCGAACTGGGGGTCAGTGCAGGTTTTCGGTGAAAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTAtt                                                                                                            <  2:409908/140‑1 (MQ=255)
                               aaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGtt                                                                                                            <  1:976003/140‑1 (MQ=255)
                               aaggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGtt                                                                                                            <  2:1469534/140‑1 (MQ=255)
                                aggTTGTCCGGAATATCTCCGGCACAGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTc                                                                                                           <  1:271207/140‑1 (MQ=255)
                                 ggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCt                                                                                                          <  2:614736/140‑1 (MQ=255)
                                 ggTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCt                                                                                                          <  1:1559574/140‑1 (MQ=255)
                                    tGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCt                                                                                                       <  1:503425/140‑1 (MQ=255)
                                     gTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTa                                                                                                      >  1:1862401/1‑140 (MQ=255)
                                     gTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTa                                                                                                      >  1:64331/1‑140 (MQ=255)
                                     gTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTa                                                                                                      >  1:780567/1‑140 (MQ=255)
                                        cGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACat                                                                                                   >  1:277305/1‑140 (MQ=255)
                                        cGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACat                                                                                                   >  2:693905/1‑140 (MQ=255)
                                            atatCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTc                                                                                               >  2:1864703/1‑140 (MQ=255)
                                            atatCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTc                                                                                               >  2:1647767/1‑140 (MQ=255)
                                               tccccGGCCCGGGGGGGGGGGCTGATACCCACCCAGACCCCTGAGGCAGGAAATTCTTCAAAC‑AGCGGCCGGGGCAGCTTTTGGGTGGAAAACCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGc                                                                                            <  2:1862401/137‑1 (MQ=255)
                                                ctcCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCa                                                                                           >  1:2122182/1‑140 (MQ=255)
                                                     gCACCGTGGGTGGAGCTGATAACCAGCCAGGTCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCAccgcc                                                                                      >  1:1220756/1‑140 (MQ=255)
                                                         cGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAgg                                                                                  >  1:986923/1‑140 (MQ=255)
                                                             ggtggAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGCGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGtgc                                                                              >  1:407289/1‑140 (MQ=255)
                                                               gggAGTTGATACCCAGCCAGATCCCTGAGGCGGGTAAATCTTCTAAC‑GGCGGCCCGTGCGGGTTTTCGGGGAAAAACCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGtgctg                                                                            <  2:2001718/139‑1 (MQ=255)
                                                               gggAGCTGATACCCAGCCAGATCCTGGGGGCAGGAAATTCTTCTAAC‑GGCGGCCGGTGCGGGTTTTGGGTGGAAAACCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGtgctg                                                                            <  2:313950/139‑1 (MQ=255)
                                                                 gggCTGATACCCAGCCAGATCCCTGAGGAAGGTAAATCTTCTAAC‑AGCGGCCCGTGCAGCTTTTGGGGGGAAAACCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGcc                                                                          <  2:1877517/138‑1 (MQ=255)
                                                                 gAGCTAATACCCACCCAGACCCCTGGGGCAGGTAAATCTTCAAAC‑AGCGGACCGTGCGGCGTTTGGGTGGAAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGcc                                                                          <  2:1784474/140‑1 (MQ=255)
                                                                  aGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCg                                                                         >  1:838105/1‑140 (MQ=255)
                                                                    cTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCt                                                                       >  2:1292671/1‑140 (MQ=255)
                                                                       aTACCCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCGGCGTTTGGGTGGTAAACCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGAt                                                                    <  2:2222114/140‑1 (MQ=255)
                                                                       aTACCCAGCAAGATCCCTGAGGCAGGAAATTCTTCTAAC‑AGCGGACCGTGCAGGTTTTGGGTGAAAAACCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGAt                                                                    <  2:277305/140‑1 (MQ=255)
                                                                       aTAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGAt                                                                    >  1:1004548/1‑140 (MQ=255)
                                                                       aTAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGAt                                                                    >  1:396577/1‑140 (MQ=255)
                                                                                   aTCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATc                                                        >  1:948256/1‑140 (MQ=255)
                                                                                   aTCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGCGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATc                                                        >  1:1608259/1‑140 (MQ=255)
                                                                                         gAGGCGGGAAAATCTCCTACC‑GGGGGACGGGGCACCTTTTCGGTGAAAAACCCCGCCTCTCCCAGCTTTTCACCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCAt                                                  <  1:994836/140‑1 (MQ=255)
                                                                                          gggCAGGAAATTTTTCAAAC‑GGCGGCCGGTGCGGTTTTTGGGGGAAAAACCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATa                                                 <  2:790884/139‑1 (MQ=255)
                                                                                             cAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGGGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAAc                                              >  2:2203873/1‑140 (MQ=255)
                                                                                               ggTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCg                                            >  1:1210413/1‑140 (MQ=255)
                                                                                               ggTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCg                                            >  1:2218995/1‑140 (MQ=255)
                                                                                               ggTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCg                                            >  1:1438635/1‑140 (MQ=255)
                                                                                               ggTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCg                                            >  2:1792941/1‑140 (MQ=255)
                                                                                                gaaaaTCTTCAAAC‑AGCGGCCGGTGCGGCGTTTCGGTGTAAAACCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           <  1:1362593/138‑1 (MQ=255)
                                                                                                gTAATTCTTCTAAC‑GGGGGCCCGTGCAGCTTTTCGGTGGAAAACCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           <  1:807910/140‑1 (MQ=255)
                                                                                                gTAAATCTTCTAAC‑AGCGGACCGTGCGGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           <  1:242669/140‑1 (MQ=255)
                                                                                                gTAAATCTTCTAAC‑AGCGGACCGTGCAGCTTTTCGGGGGTAAACCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           <  1:12843/140‑1 (MQ=255)
                                                                                                gTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           >  1:625289/1‑140 (MQ=255)
                                                                                                gTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           <  1:174004/140‑1 (MQ=255)
                                                                                                aaaattcttcaAAC‑GGGGGCCCGTGAGGCTTTTGGGTGAAAAACCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGc                                           <  1:1677375/135‑1 (MQ=255)
                                                                                                  aatttttcaAAC‑GGGGGCCCGTGCAGGTTTTGGGTGGAAAACCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCa                                         <  2:2122182/135‑1 (MQ=255)
                                                                                                   aaTTTTCAAAC‑AGCGGCCCGTGCGGCTTTTCGGTGAAAAACCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCAc                                        <  2:1249569/140‑1 (MQ=255)
                                                                                                   aaTCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCAc                                        <  1:1864703/140‑1 (MQ=255)
                                                                                                    attttctAAC‑AGCGGCCCGTGCAGCTTTTGGGGGGAAAACCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCAcc                                       <  1:1641097/137‑1 (MQ=255)
                                                                                                    aTCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGAAAACCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCAcc                                       <  1:1917332/140‑1 (MQ=255)
                                                                                                                 cGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGt                           >  2:2280372/1‑140 (MQ=255)
                                                                                                                  ggccggTGCAGGTTTTGGGTGGAAAACCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTg                          <  1:868631/135‑1 (MQ=255)
                                                                                                                  ggcccGTGCAGCGTTTCGGTGGAAAACCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTg                          <  1:1491339/137‑1 (MQ=255)
                                                                                                                  ggACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTg                          <  1:1792941/140‑1 (MQ=255)
                                                                                                                         gCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTAtt                   >  2:1716269/1‑140 (MQ=255)
                                                                                                                            gCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTa                <  1:1908381/140‑1 (MQ=255)
                                                                                                                            gCGTTTCGGTGGAAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTa                <  1:1803343/140‑1 (MQ=255)
                                                                                                                             cGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTAc               >  2:1957499/1‑140 (MQ=255)
                                                                                                                                ttCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCt            >  1:150736/1‑140 (MQ=255)
                                                                                                                                  cGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATCAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCtgt          >  1:1267723/1‑140 (MQ=255)
                                                                                                                                  cGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCtgt          >  2:1516021/1‑140 (MQ=255)
                                                                                                                                     gggtAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGaa       <  1:2203873/139‑1 (MQ=255)
                                                                                                                                     gggaaaacCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGaa       <  2:1438635/136‑1 (MQ=255)
                                                                                                                                     ggaaaaacCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGaa       <  2:1566538/136‑1 (MQ=255)
                                                                                                                                      ggaaaacCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAAc      <  2:1191808/137‑1 (MQ=255)
                                                                                                                                       gtAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAAcg     >  1:1756937/1‑140 (MQ=255)
                                                                                                                                          aaaCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGTTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGt  >  2:1369866/1‑140 (MQ=255)
                                                                                                                                          aaaCCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGt  <  2:769236/140‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                         
TCTGTTCCTGCAATGCTTCATAGAAAGGAGAAAGGTTGTCCGGAATATCTCCGGCACCGTGGGTGGAGCTGATAACCAGCCAGATCCCTGAGGCAGGTAAATCTTCTAAC‑AGCGGACCGTGCAGCGTTTCGGTGGTAAAACCCGCCTCTTCCAGCTTTTCAGCCAGGTGTTCTGCTACATATTCGGCACCGCCGAGGGTGCTGCCGCTGATAAGAGTGATATCTGCCATAAACCGCCACCTTTATTAAGAGTGGCGTATTGTACGCTGTGAACGCGT  >  NC_000913/3926227‑3926503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑