Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG26.1% 312.9 / 15.1 154T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (32/81);  new base G (40/0);  total (73/81)
Fisher's exact test for biased strand distribution p-value = 2.59e-17
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 160 total aligned reads displayed.

AGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAA  >  NC_000913/4568367‑4568642
                                                                                                                                         |                                                                                                                                            
agGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaa                                                                                                                                            >  1:2102550/1‑140 (MQ=255)
         aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTacaaaaaaacg                                                                                                                                   >  2:363580/1‑136 (MQ=255)
          cTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTgg                                                                                                                                  <  1:1394788/140‑1 (MQ=255)
            gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCa                                                                                                                                <  1:1347679/140‑1 (MQ=255)
             aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAt                                                                                                                               <  2:2093753/140‑1 (MQ=255)
              cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATa                                                                                                                              >  1:1076654/1‑140 (MQ=255)
              cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATa                                                                                                                              >  2:821658/1‑140 (MQ=255)
              cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGAAAAAAAAAATGGCATa                                                                                                                              >  1:1730209/1‑140 (MQ=255)
              cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGACGGGTAAAAAAACGCGGCATa                                                                                                                              >  1:621041/1‑140 (MQ=255)
                 cGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaaca                                                                                                                           <  1:250041/140‑1 (MQ=255)
                  ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaa                                                                                                                          <  1:1002941/140‑1 (MQ=255)
                    cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATaacaaaa                                                                                                                        >  2:73046/1‑139 (MQ=255)
                     aTTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaaaca                                                                                                                       <  1:355880/140‑1 (MQ=255)
                       tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAaaaaac                                                                                                                     >  2:1468897/1‑140 (MQ=255)
                          aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                  <  2:406156/140‑1 (MQ=255)
                          aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                  <  1:53633/140‑1 (MQ=255)
                            tCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAAATCCtt                                                                                                                >  2:241185/1‑140 (MQ=255)
                              aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGt                                                                                                              >  1:1042797/1‑140 (MQ=255)
                                gTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAAAAAAAAAAACCTTGTcc                                                                                                            >  2:58837/1‑140 (MQ=255)
                                 tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCg                                                                                                           <  1:905216/140‑1 (MQ=255)
                                 tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCg                                                                                                           <  1:821658/140‑1 (MQ=255)
                                  aCCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCgg                                                                                                          >  1:1926706/1‑140 (MQ=255)
                                   ccACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAAAAAACAACTCCTTGTCCggg                                                                                                         >  2:1870034/1‑139 (MQ=255)
                                      caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑Gaa                                                                                                     <  1:241185/140‑1 (MQ=255)
                                      caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACCCCCTTTCCGGA‑Gaa                                                                                                     >  2:1543414/1‑140 (MQ=255)
                                      caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAAGCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑Gaa                                                                                                     <  1:113423/140‑1 (MQ=255)
                                          aaTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGCATAAAAAACAACTCCTTGTCCGGA‑GAAc‑ccc                                                                                                >  2:1355730/1‑140 (MQ=255)
                                          aaTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAAATCCTTGTCCGGA‑GAAa‑ccc                                                                                                >  2:862295/1‑140 (MQ=255)
                                              aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCATAACAAAAAACCCCTTGTCCGGA‑GGAC‑CCCAACg                                                                                            >  1:1962321/1‑140 (MQ=255)
                                                cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACggg                                                                                          >  1:1262921/1‑140 (MQ=255)
                                                cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCCTGTCCGGA‑GAAA‑CCCCACggg                                                                                          >  1:124399/1‑140 (MQ=255)
                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAAAAAAAAACTCCTTGTCCGGA‑GAAC‑CCCAACgggg                                                                                         >  1:1952725/1‑140 (MQ=255)
                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCAAAACAAACAACCCCCTTTTCCGA‑GAAC‑CCCAACgggg                                                                                         >  1:654733/1‑140 (MQ=255)
                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAAAAAAACCTTGTCCGGA‑GAAC‑CCCAACgggg                                                                                         >  2:123172/1‑140 (MQ=255)
                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGCAAAAAAAAGAGGCATAAAAAACAACTCCCTGTTCGGAGGAAC‑CCCACCggg                                                                                          >  2:2229636/1‑140 (MQ=255)
                                                  cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGa                                                                                        <  1:166579/140‑1 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGaa                                                                                 <  1:2167941/140‑1 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGaa                                                                                 >  1:1382300/1‑140 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAAAAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGGAAAAGaa                                                                                 >  1:809643/1‑140 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGAGGCATAAAAAAAAACTCCTTGTCCGGA‑GAAA‑CCCAACGGGGgaaaacaa                                                                                 >  2:963466/1‑136 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAACAACTCCTTTTTCGGG‑GAAA‑CCCCACGGGGGAAACGaa                                                                                 >  1:336409/1‑140 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAAAAAACAACACCCTGTCCGGA‑GAAC‑CCCAACGGGGAAAAAGaa                                                                                 >  2:264441/1‑140 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAAATCCTTGTCCGGA‑GAAA‑CCCCACGGGGGAAACGaa                                                                                 >  1:1071181/1‑140 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCAAAACAAACAAACCCTTTTCCGGA‑GAAA‑CCCCACGGGGGAAAAGaa                                                                                 >  2:1790479/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAAAAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGaaa                                                                                >  1:435103/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGGATAAAAAAAAACCCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGaaa                                                                                >  2:27986/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGaaa                                                                                >  1:705566/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAAAAACTCCCTTTCCGGG‑GAAA‑CCCCACGGGGGAAACGaaa                                                                                >  1:1446662/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAAAAACTCCCTGTCCGGA‑GAAC‑CCCAACGGGGAAAAAGaaa                                                                                >  2:58929/1‑140 (MQ=255)
                                                               aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGAGGCATAAAAAAAAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACAAAATTCaa                                                                           >  2:1263227/1‑140 (MQ=255)
                                                                tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAAt                                                                          <  1:539460/140‑1 (MQ=255)
                                                                tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAAt                                                                          <  2:2053174/140‑1 (MQ=255)
                                                                tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGGAAAAAAAAAAACACCCTGTCCCGG‑GAAA‑CCCCACGGGGAAAAAGaaaattaaa                                                                          >  2:187809/1‑134 (MQ=255)
                                                                 ccGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATa                                                                         <  2:2102550/140‑1 (MQ=255)
                                                                   gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATAcc                                                                       <  2:269655/140‑1 (MQ=255)
                                                                   gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATAcc                                                                       <  2:1076654/140‑1 (MQ=255)
                                                                   gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGAGGGATAAAAAAAAAATCCTTGTCCCGA‑GAAC‑CCCAACGGGGAAAAAGAAAATCAAAAcc                                                                       >  2:16331/1‑140 (MQ=255)
                                                                   gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGGCTAACAAACAACTCCTTGTCCGGG‑GAAC‑CCCCACGGGGGAAAAGAAAATCAATAcc                                                                       >  2:1968599/1‑140 (MQ=255)
                                                                   gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGGATAAAAAAAAAATCCTTGTCCGGG‑GAAC‑CCCAACGGGGAAAAAGAAAATTAAAAcc                                                                       >  2:205369/1‑140 (MQ=255)
                                                                    tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAAAAAACAAATCCTTGTACGGA‑GGAC‑CCCCACGGGGGAAAAGAAATTCaaaaacc                                                                      >  1:2001335/1‑135 (MQ=255)
                                                                         aGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCCTAAAAAAAAACCCCTTTTCCGGG‑GGAC‑CCCAACGGGGGAAAAGAAAATCAAAAACGTCggg                                                                 >  2:1477399/1‑139 (MQ=255)
                                                                          gATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTa                                                                <  1:1690491/140‑1 (MQ=255)
                                                                           aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTaa                                                               <  1:867008/140‑1 (MQ=255)
                                                                              cGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGa                                                            <  1:1531650/140‑1 (MQ=255)
                                                                                 agcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGGAAAAAACGTGGCAAAAAAAAAAAAACCCTTTCCGGG‑GAACACCCAAGGGGGAAAA‑GAAATTTAATACCGTCGGGAATGaaaa                                                         >  2:1802907/1‑137 (MQ=255)
                                                                                  gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaa                                                        <  1:772353/140‑1 (MQ=255)
                                                                                  gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaa                                                        <  2:305810/140‑1 (MQ=255)
                                                                                     aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                     <  2:705566/140‑1 (MQ=255)
                                                                                             cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag                                             <  2:973181/140‑1 (MQ=255)
                                                                                             cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAAAAAATCCTTTTCCCGG‑GAAA‑CCCCACGGGGGAAAAGAAAATCAATACCGTCGGGAATGACGAAAAGCAGGGgag                                             >  2:764483/1‑140 (MQ=255)
                                                                                              aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                            <  1:1802907/140‑1 (MQ=255)
                                                                                              aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                            <  1:205369/140‑1 (MQ=255)
                                                                                                aaTCAACGCCATCGGGAAGAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg                                          <  1:1496732/140‑1 (MQ=255)
                                                                                                aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg                                          <  2:1386293/140‑1 (MQ=255)
                                                                                                aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg                                          <  1:1271425/140‑1 (MQ=255)
                                                                                                  tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGGAGCCTAACAAAAAAATCCCTGTCCGGG‑GAAA‑CCCAAAGGGGAAAAAGAAAATCAATACCGTCGGGAATGACGAAAGGCAGGGGGGAAggg                                        >  2:262282/1‑140 (MQ=255)
                                                                                                  tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAAAAACTCCTTTTCCGGA‑GAAA‑CCCCACGGGGGAAAAGAAAATCAATAACCTCGGGAATAACGAAAAGCAGGGGAGAAggg                                        >  2:2000658/1‑140 (MQ=255)
                                                                                                  tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAACAAACAAACCCCTTTCCGGG‑GAAC‑CCCAAAGGGGGAAAAGAAATTCAAAACCGTCGGGAATGACGAAAAGCAGGGGAGAAggg                                        >  2:954708/1‑140 (MQ=255)
                                                                                                  tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAAAAACTCCTTTTCCGGG‑GGAC‑CCCAACGGGGGAAAAGAAAATCAATACCCTCGGGAAATACGAAAAGCAGGGGAGAAggg                                        >  2:1731836/1‑140 (MQ=255)
                                                                                                     aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaa                                     <  1:2088879/140‑1 (MQ=255)
                                                                                                      cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAAc                                    <  1:264441/140‑1 (MQ=255)
                                                                                                      cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACCCCTTTTCCGGA‑GAAA‑CCCAACGGGGGAAAAGAAAATCAATACCGTCGGGAATGACGAAAAGGAGGGGAGAAAGGCaaa                                    >  2:1069413/1‑139 (MQ=255)
                                                                                                        ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATCCCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                  <  1:288712/140‑1 (MQ=255)
                                                                                                         cATCGGGAAAAACAGCATGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACgag                                 <  1:2126006/140‑1 (MQ=255)
                                                                                                           tCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGGAAAAGAAAATCAATACCGTCGGGAATGACGAAAGGCAGGGGAGAAGGGGAACGAGAc                               >  2:1228858/1‑140 (MQ=255)
                                                                                                           ccGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                               <  1:1662226/139‑1 (MQ=255)
                                                                                                                aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                          <  1:986224/140‑1 (MQ=255)
                                                                                                                aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                          <  1:27986/140‑1 (MQ=255)
                                                                                                                  aaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAAt                        <  2:1262921/140‑1 (MQ=255)
                                                                                                                   aaCAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATTAAAAAAAACTCCTTTTCCGGG‑GTAC‑CCCAACAGGGGAAAAGAAATTTAATAACCTCGGGAATTACGAAAGGCAGGGGAGTAATGGAAAGAGACAGCaaaaa                       >  2:1150053/1‑138 (MQ=255)
                                                                                                                     cAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAAAAAATCCCTGTCCGGA‑GAAA‑CCCCACGGGGGAAAAGAAAATTAATACCCTCGGGAATGACGAAAAGGAGGGGGGGAGGGGGAAGAGAATGCAAAAGTa                     >  2:2213344/1‑140 (MQ=255)
                                                                                                                       gCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt                   <  1:2229636/140‑1 (MQ=255)
                                                                                                                               gcATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCa           <  1:2044684/140‑1 (MQ=255)
                                                                                                                                  tGGCGGGTAAAAAAAAGGGGGATAACAAAAAACTCCTTGTCCGGA‑GAAA‑CCCAACGGGGGAAAAGAAAATCAAAAACGCCGGGAATGACGAAAAGCAGGGGGGAAAGGGAACGAGACTGCAAAAGTACTGAATTTTAttt        >  2:166278/1‑138 (MQ=255)
                                                                                                                                   ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa       <  1:833150/140‑1 (MQ=255)
                                                                                                                                   ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa       <  2:2141321/140‑1 (MQ=255)
                                                                                                                                   ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa       <  2:1382300/140‑1 (MQ=255)
                                                                                                                                   ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa       <  2:1962321/140‑1 (MQ=255)
                                                                                                                                   ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa       <  1:1968599/140‑1 (MQ=255)
                                                                                                                                        gTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCaa  <  1:1228858/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                            
AGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAA  >  NC_000913/4568367‑4568642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑