mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,206,435 | 0 | C | T | 32.4% | 54.8 / 14.5 | 34 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 4,604,344 | 0 | C | T | 32.2% | 82.9 / 29.9 | 59 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 650,809 | 0 | T | G | 29.6% | 123.9 / 18.7 | 71 | T350P (ACC→CCC) | citC | citrate lyase synthetase |
| * | NC_000913 | 1,269,231 | 0 | T | C | 26.1% | 29.1 / 12.5 | 23 | A15A (GCA→GCG) | ldrA | small toxic polypeptide LdrA |
| * | NC_000913 | 4,296,060 | 0 | C | T | 24.0% | 138.7 / 41.2 | 75 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 376,401 | 0 | T | G | 22.9% | 94.0 / 10.2 | 48 | L315V (TTG→GTG) | mhpT | 3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| * | NC_000913 | 4,287,719 | 0 | T | A | 21.4% | 140.5 / 15.9 | 56 | intergenic (‑348/‑45) | acs/nrfA | acetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase |
| * | NC_000913 | 3,844,219 | 0 | T | G | 20.5% | 204.3 / 10.5 | 83 | F86V (TTT→GTT) | adeD | adenine deaminase |
| * | NC_000913 | 2,326,450 | 0 | T | G | 20.4% | 114.0 / 12.1 | 49 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 3,926,366 | 0 | A | C | 20.3% | 147.4 / 11.6 | 64 | G30G (GGT→GGG) | mioC | flavoprotein MioC |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 70 (1.090) | 6 (0.100) | 5/260 | 5.3 | 8.7% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 60 (1.000) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 1934785 = | 36 (0.560) | 3 (0.050) | 3/262 | 6.3 | 7.5% | intergenic (‑181/+54) | edd/zwf | phosphogluconate dehydratase/NADP(+)‑dependent glucose‑6‑phosphate dehydrogenase |
| ? | NC_000913 | 1934838 = | 40 (0.660) | intergenic (‑234/+1) | edd/zwf | phosphogluconate dehydratase/NADP(+)‑dependent glucose‑6‑phosphate dehydrogenase | |||||
| * | ? | NC_000913 | = 4408388 | 50 (0.780) | 3 (0.050) | 3/274 | 6.4 | 5.9% | coding (1735/2442 nt) | rnr | RNase R |
| ? | NC_000913 | 4408601 = | 46 (0.720) | coding (1948/2442 nt) | rnr | RNase R | |||||
| * | ? | NC_000913 | = 3734386 | 75 (1.160) | 3 (0.050) | 3/270 | 6.4 | 3.3% | coding (667/1182 nt) | xylH | xylose ABC transporter membrane subunit |
| ? | NC_000913 | = 3734744 | 104 (1.660) | coding (1025/1182 nt) | xylH | xylose ABC transporter membrane subunit | |||||
| * | ? | NC_000913 | 4570059 = | NA (NA) | 3 (0.050) | 3/276 | 6.5 | 4.3% | intergenic (+141/+103) | rpnD/yjiR | truncated recombination‑promoting nuclease‑like protein RpnD/fused putative DNA‑binding transcriptional regulator/putative aminotransferase YjiR |
| ? | NC_000913 | 4570159 = | 66 (1.030) | intergenic (+241/+3) | rpnD/yjiR | truncated recombination‑promoting nuclease‑like protein RpnD/fused putative DNA‑binding transcriptional regulator/putative aminotransferase YjiR | |||||