Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,775,467	0	A	C	21.6%	188.3 / 12.1	88	intergenic (+23/‑120)	aroD/ydiF	3‑dehydroquinate dehydratase/putative acetate‑CoA transferase
Reads supporting (aligned to +/- strand):  ref base A (61/8);  new base C (0/19);  total (61/27)
Fisher's exact test for biased strand distribution p-value = 2.49e-13
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

GCTGGTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACC  >  NC_000913/1775328‑1775603                                                                                                                                            |                                                                                                                                         gctggTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGAGGGAaca                                                                                                                                          <  1:1808372/140‑1 (MQ=255)   tggTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACAcc                                                                                                                                        <  1:855535/140‑1 (MQ=255)     gTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACCCCCt                                                                                                                                      <  1:594550/140‑1 (MQ=255)      tGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTc                                                                                                                                     >  2:1996258/1‑140 (MQ=255)      tGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTc                                                                                                                                     >  2:1955810/1‑140 (MQ=255)      tGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTc                                                                                                                                     >  2:1618628/1‑140 (MQ=255)           tATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTcccccc                                                                                                                                >  2:605378/1‑138 (MQ=255)           tATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCccgc                                                                                                                                >  2:614367/1‑140 (MQ=255)            aTTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCccgcc                                                                                                                               >  1:288700/1‑140 (MQ=255)               tGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCCCCGaa                                                                                                                            >  2:506164/1‑140 (MQ=255)                   cgggcggcAACTTTTGGTGCGGAAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCAAAAGCAATAATATTTCGGCGGAAACCCCCTCCCCGCCGAACTaa                                                                                                                        <  2:1557091/138‑1 (MQ=255)                     ggcggcAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTaaaa                                                                                                                      >  1:1344849/1‑140 (MQ=255)                       cggcAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGCACACCCTCCCCGCCGCACTaaaaaa                                                                                                                    >  1:1763143/1‑140 (MQ=255)                       cggcAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTaaaaaa                                                                                                                    >  1:931933/1‑140 (MQ=255)                        ggcAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACCCCCCCCCCGCCGAACTAAAAAat                                                                                                                   <  2:288700/140‑1 (MQ=255)                             tttttGGTGCGGTAAAAAAAGCGTCTGCGCTAGGGAAAATCTCGGTAAATGTTTTGCGAACGGTATTAACTTTTTTACTCCAGGAATAAACAATAATTTTTGGGCGGAAACACCCGCCCCGCCGAACTAAAAAATATAtt                                                                                                              <  2:1153837/139‑1 (MQ=255)                                ttGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCaa                                                                                                           >  1:1496349/1‑140 (MQ=255)                                      cGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTAt                                                                                                     >  1:573542/1‑140 (MQ=255)                                          aaaaaaaGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTtaa                                                                                                 >  1:1464820/1‑140 (MQ=255)                                                aGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACCCCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATaaaaa                                                                                           <  1:889146/140‑1 (MQ=255)                                                aGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATAAATTCAATCGTATTTAATaaaaa                                                                                           >  2:771273/1‑140 (MQ=255)                                                   gTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAatat                                                                                        >  2:299900/1‑140 (MQ=255)                                                   gTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAatat                                                                                        >  1:1942573/1‑140 (MQ=255)                                                   gTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAatat                                                                                        >  2:518822/1‑140 (MQ=255)                                                    tCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACCCCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATAtt                                                                                       <  1:477071/140‑1 (MQ=255)                                                        cgcCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACCCCATGCATAAGCAATAATATTTCGGCGGGAACCCCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGt                                                                                   <  2:408906/140‑1 (MQ=255)                                                        cgcCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACCCCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGt                                                                                   <  2:1435127/140‑1 (MQ=255)                                                        cgcCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGt                                                                                   >  1:1917845/1‑140 (MQ=255)                                                           cAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACCCCCCCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAg                                                                                <  1:1343090/140‑1 (MQ=255)                                                                 aaaTCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACCCCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCtg                                                                          <  2:924441/140‑1 (MQ=255)                                                                   aTCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCtgtg                                                                        >  1:827988/1‑140 (MQ=255)                                                                   aTCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCtgtg                                                                        >  1:1261109/1‑140 (MQ=255)                                                                   aTCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAAAATTTCGTGGGTCTCtgtg                                                                        >  2:593136/1‑140 (MQ=255)                                                                    tctcGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTgc                                                                       >  1:1112888/1‑140 (MQ=255)                                                                     ctcGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTgcg                                                                      >  1:486003/1‑140 (MQ=255)                                                                      gcGGTAAATGATTTGCGCACGGTATTAACTTTTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACCCCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTgcgc                                                                     <  2:1156583/139‑1 (MQ=255)                                                                        ggTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTa                                                                   >  1:1360924/1‑140 (MQ=255)                                                                        ggTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTa                                                                   <  2:1464820/140‑1 (MQ=255)                                                                          tAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAAt                                                                 >  1:470807/1‑140 (MQ=255)                                                                            aaTGATTCGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACCCCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATtc                                                               <  2:984707/140‑1 (MQ=255)                                                                              tGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATtctc                                                             >  2:1578886/1‑140 (MQ=255)                                                                              tGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATtctc                                                             >  2:1629323/1‑140 (MQ=255)                                                                                aTTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCa                                                           >  1:1794987/1‑140 (MQ=255)                                                                                  ttGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACCCCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCAtt                                                         <  1:1996258/140‑1 (MQ=255)                                                                                    gcgcACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTg                                                       >  1:843156/1‑140 (MQ=255)                                                                                       cagggTATTAACTATTTTACCCCAGGCATAAGAAATAATATTTCGGCGGGAACCCCCCCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCg                                                    <  2:113647/137‑1 (MQ=255)                                                                                       cACGGTATTACCTATTTAACACCGGGCATAAACAATAATATTGCGGCGGGAACCCCCCCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCg                                                    <  2:1359984/140‑1 (MQ=255)                                                                                       cACGGTATTAACTATTTTACCCCAGGCATAAGCAATAATATTTCGGCGGGAACCCCCCCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCg                                                    <  1:634002/140‑1 (MQ=255)                                                                                               tAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTCTTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGGAGGGaaa                                            >  1:656894/1‑140 (MQ=255)                                                                                               tAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCCCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGaaa                                            >  1:691326/1‑140 (MQ=255)                                                                                                aaCTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGaaaa                                           >  2:973361/1‑140 (MQ=255)                                                                                                 aCTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAAt                                          <  2:1942573/140‑1 (MQ=255)                                                                                                 aCTATTTTACACCAGGCATAAGCAATAATATTCCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAAt                                          <  1:1844872/140‑1 (MQ=255)                                                                                                  cTATTTTACACCAGGCATAAGAAATAATATTTCGGCGGGAACCCCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATc                                         <  2:1034696/140‑1 (MQ=255)                                                                                                  cTATTTTACACCAGGCAAAAGCAATAATATTTCGGCGGAAACCCCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATc                                         <  2:573542/140‑1 (MQ=255)                                                                                                  cTATTCCACCCCAGGCAAAAGCAATAATATTTCGGCGGGAACCCCCCCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATc                                         <  2:1265714/140‑1 (MQ=255)                                                                                                      tttACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTTGCGTAGGGAAAATCACAt                                     >  2:73934/1‑140 (MQ=255)                                                                                                      tttACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACAt                                     >  1:1176035/1‑140 (MQ=255)                                                                                                      tttACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACAt                                     >  1:1884073/1‑140 (MQ=255)                                                                                                      tttACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACAt                                     >  1:851175/1‑140 (MQ=255)                                                                                                      tttACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACAt                                     >  2:597940/1‑140 (MQ=255)                                                                                                      tttACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACAt                                     >  2:1839583/1‑140 (MQ=255)                                                                                                      tttACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACAt                                     >  2:1284706/1‑140 (MQ=255)                                                                                                      tttACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACAt                                     >  1:785471/1‑140 (MQ=255)                                                                                                      tttACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACAt                                     >  2:1123929/1‑140 (MQ=255)                                                                                                      tttACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACAt                                     >  1:326801/1‑140 (MQ=255)                                                                                                      tttACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAAATAAAAAATATATTCAATCGTATTTAAAAAAAATATTTCGTGAGTCTCTGTGCGCTAATTTTCCATTTGGCGTAGGGAAAATCACAt                                     >  2:27195/1‑140 (MQ=255)                                                                                                      tttACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCCCCGAACTAAAAAATATATTTAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTTTCCATTTGGCGTAGGGAAAATCACAt                                     >  2:1052583/1‑140 (MQ=255)                                                                                                      tttACACCAGGCATAAGCAACAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACAt                                     >  1:1850079/1‑140 (MQ=255)                                                                                                        tACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCt                                   >  2:565005/1‑140 (MQ=255)                                                                                                          cacCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGa                                 >  2:923437/1‑140 (MQ=255)                                                                                                          cacCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGa                                 >  2:1511677/1‑140 (MQ=255)                                                                                                            ccAGGCATAAGCAATAATATTTCGGCGGGAACCCCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAAt                               <  1:1629323/140‑1 (MQ=255)                                                                                                            ccAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAAt                               <  2:1935883/140‑1 (MQ=255)                                                                                                               ggCATAAGCAATAATATTTCGGCGGGGACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAg                            >  2:1783143/1‑140 (MQ=255)                                                                                                               ggCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTCAAAAATATATTCAATCATATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAg                            >  1:361349/1‑140 (MQ=255)                                                                                                               ggCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAg                            >  2:1739804/1‑140 (MQ=255)                                                                                                               ggCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGGGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAg                            >  2:1442981/1‑140 (MQ=255)                                                                                                                gCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAgg                           >  2:1096654/1‑140 (MQ=255)                                                                                                                    aaGCAATAATATTTCGGCGGGAACCCCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAAtt                       <  1:299900/140‑1 (MQ=255)                                                                                                                    aaGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAAtt                       >  2:715876/1‑140 (MQ=255)                                                                                                                    aaGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAAtt                       <  1:1612469/140‑1 (MQ=255)                                                                                                                    aaGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGGGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATAAGGAAtt                       >  1:1977971/1‑140 (MQ=255)                                                                                                                     aGCAATAATATTTCGGGGGGAACCCCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTa                      <  2:291812/140‑1 (MQ=255)                                                                                                                     aGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTa                      >  1:414770/1‑140 (MQ=255)                                                                                                                          taataTTTCGGCGGGAACACCCTCCCCGCCGGACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGCCCCTGTGCGGTAATTTTCCATTTGGCGGAGGGAAAATCACATCTGAATGAGGGATTAACAAt                 >  2:292979/1‑140 (MQ=255)                                                                                                                          taataTTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAAt                 >  2:1361962/1‑140 (MQ=255)                                                                                                                          taataTTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAAt                 >  1:281904/1‑140 (MQ=255)                                                                                                                          taataTTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAAt                 >  2:1942399/1‑140 (MQ=255)                                                                                                                          taataTTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGCGAGTCTCTGTGCGCTAATTTTCCATTTTGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAAt                 >  2:1556895/1‑140 (MQ=255)                                                                                                                             tatTTCGGCGGGACCCCCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGaa              <  2:1917845/140‑1 (MQ=255)                                                                                                                             tatTTCGGCGGAAACCCCCCCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGaa              <  2:231978/140‑1 (MQ=255)                                                                                                                                ttCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAAcc           <  1:1955810/140‑1 (MQ=255)                                                                                                                                  cggcggGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTg         >  1:873435/1‑140 (MQ=255)                                                                                                                                    gcggGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTa       >  2:1703410/1‑140 (MQ=255)                                                                                                                                        gAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAac   <  1:1040606/140‑1 (MQ=255)                                                                                                                                         aaCACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAacc  >  1:274164/1‑140 (MQ=255)                                                                                                                                            |                                                                                                                                         GCTGGTGAAGTATTTGGCTCGGCGGCAACTTTTGGTGCGGTAAAAAAAGCGTCTGCGCCAGGGCAAATCTCGGTAAATGATTTGCGCACGGTATTAACTATTTTACACCAGGCATAAGCAATAATATTTCGGCGGGAACACCCTCCCCGCCGAACTAAAAAATATATTCAATCGTATTTAATAAAAATATTTCGTGAGTCTCTGTGCGCTAATTCTCCATTTGGCGTAGGGAAAATCACATCTGAATCAGGAATTAACAATGAAACCTGTAAAACC  >  NC_000913/1775328‑1775603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑