BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1651548	NA (NA)	27 (0.280)	22/278	2.8	20.6%	noncoding (706/706 nt)	IS2	repeat region
*	?	NC_000913	= 1979401	104 (1.070)	27 (0.280)	22/278	2.8	20.6%	intergenic (‑186/‑352)	insA‑5/uspC	IS1 protein InsA/universal stress protein C

Only 100 of 149 total aligned reads displayed.

GCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAC  >  NC_000913/1979263‑1979540

ttacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCAcc                                                                                                                                            <  1:48813‑M2/124‑1 (MQ=255)

  acttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGt                                                                                                                                          <  1:623595‑M2/126‑1 (MQ=255)

     taacataAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACtggatt                                                                                                                                       >  2:1354914‑M2/4‑134 (MQ=255)

      aacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAaat                                                                                                                                      >  2:1060439‑M2/11‑140 (MQ=255)

        cataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAattaa                                                                                                                                    >  1:1117576‑M2/9‑140 (MQ=255)

        cATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACtggatttgc                                                                                                                                    >  1:852533‑M2/1‑131 (MQ=255)

            aatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAatcat                                                                                                                                <  1:121098‑M2/136‑1 (MQ=255)

            aatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAatcat                                                                                                                                <  2:1150070‑M2/136‑1 (MQ=255)

            aatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAatcat                                                                                                                                <  1:183803‑M2/136‑1 (MQ=255)

            aatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAatcat                                                                                                                                <  2:1387768‑M2/136‑1 (MQ=255)

             atgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAatcatc                                                                                                                               >  1:439737‑M2/4‑140 (MQ=255)

             atgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAatcatc                                                                                                                               >  2:286881‑M2/4‑140 (MQ=255)

             atgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAatcatc                                                                                                                               >  1:872423‑M2/4‑140 (MQ=255)

             atgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAatcatc                                                                                                                               >  1:207363‑M2/4‑140 (MQ=255)

             aTGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACtggatttgccccta                                                                                                                               <  1:54205‑M2/140‑15 (MQ=255)

             aTGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACtggatttgccccta                                                                                                                               <  1:392810‑M2/140‑15 (MQ=255)

               gTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTg                                                                                                                             <  2:276999‑M2/139‑1 (MQ=255)

                tataAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGc                                                                                                                            <  2:1341116/140‑1 (MQ=255)

                  taAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCta                                                                                                                          >  2:1212222/1‑140 (MQ=255)

                     gTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACtggatttgcccctatatttcca                                                                                                                       >  2:1434219‑M2/1‑118 (MQ=255)

                     gTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataa                                                                                                                       >  1:1393233/1‑140 (MQ=255)

                       cATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACtggatttgcccctatatttccaga                                                                                                                     >  1:1521390‑M2/1‑116 (MQ=255)

                        aTACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTTCGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaata                                                                                                                    >  1:1272435/1‑140 (MQ=255)

                        aTACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaata                                                                                                                    >  1:1451188/1‑140 (MQ=255)

                        aTACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaata                                                                                                                    >  1:670165/1‑140 (MQ=255)

                        aTACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaata                                                                                                                    >  2:950179/1‑140 (MQ=255)

                        aTACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaata                                                                                                                    >  2:726960/1‑140 (MQ=255)

                         tACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaataa                                                                                                                   >  2:1304933/1‑140 (MQ=255)

                          aCTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAaataat                                                                                                                  >  2:1491109/1‑140 (MQ=255)

                          aCTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAaataat                                                                                                                  <  1:522966/140‑1 (MQ=255)

                              ttgttttgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACt                                                                                                              >  1:1429676/1‑140 (MQ=255)

                               tgttttgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACtggatttgcccctatatttccagacatctgtt                                                                                                             >  2:1397037‑M2/1‑108 (MQ=255)

                               tgttttgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACtt                                                                                                             <  2:743517/140‑1 (MQ=255)

                               tgttttgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACtt                                                                                                             >  1:574954/1‑140 (MQ=255)

                               tgttttgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACtt                                                                                                             <  2:3438/140‑1 (MQ=255)

                                gttttgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACttt                                                                                                            >  1:693531/1‑140 (MQ=255)

                                  tttgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCa                                                                                                          <  2:670165/140‑1 (MQ=255)

                                  tttgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCa                                                                                                          <  1:1519628/140‑1 (MQ=255)

                                    tgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAATTAATCATCTGCTATAAATAATCACTTTCATg                                                                                                        <  2:1117576/140‑1 (MQ=255)

                                    tgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATg                                                                                                        <  1:286881/140‑1 (MQ=255)

                                    tgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATg                                                                                                        <  1:1491109/140‑1 (MQ=255)

                                    tgGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATg                                                                                                        <  2:439737/140‑1 (MQ=255)

                                      ggTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCa                                                                                                      >  2:504523/1‑140 (MQ=255)

                                         gtATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATa                                                                                                   <  1:1547576/140‑1 (MQ=255)

                                           aTTTCAATCTGTTAAAAAGTTTCTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATAcc                                                                                                 >  2:1393087/1‑140 (MQ=255)

                                               cAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGAt                                                                                             <  1:395464/140‑1 (MQ=255)

                                                   cTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGc                                                                                         <  2:42986/140‑1 (MQ=255)

                                                   cTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGc                                                                                         <  1:471935/140‑1 (MQ=255)

                                                    tGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagc                                                                                        <  1:1178694‑M2/140‑54 (MQ=255)

                                                      ttAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagccc                                                                                      <  2:673810‑M2/140‑56 (MQ=255)

                                                      ttAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTAt                                                                                      >  1:291721/1‑140 (MQ=255)

                                                      ttAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTAt                                                                                      >  2:62611/1‑140 (MQ=255)

                                                      ttAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTAt                                                                                      >  2:1505237/1‑140 (MQ=255)

                                                         aaaaGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTAtttt                                                                                   <  1:950179/140‑1 (MQ=255)

                                                          aaaGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctg                                                                                  >  2:54205‑M2/1‑81 (MQ=255)

                                                            aGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgcc                                                                                >  2:392810‑M2/1‑79 (MQ=255)

                                                             gTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTaaa                                                                               <  1:1122345/140‑1 (MQ=255)

                                                              tttttCGCTACGCTAGCAATCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCTCAGTCAAAATAACTCTCCGTAAATAATCATCTGCTATAAATAATCGCTTTCATGCAATACCAGATAAGCTATTTTTAAAc                                                                              <  2:576982/140‑1 (MQ=255)

                                                                tttCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAg                                                                            >  2:1197648/1‑140 (MQ=255)

                                                                  tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGac                                                                          <  2:486070/140‑1 (MQ=255)

                                                                        cgctaGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTAc                                                                    >  1:148060/1‑140 (MQ=255)

                                                                            agcaagcaAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCg                                                                  <  1:932094/140‑1 (MQ=255)

                                                                             gcaagcaaAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGcac                                                               <  1:1197648/140‑1 (MQ=255)

                                                                                 gcaaAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCacaaca                                                           <  1:36706/140‑1 (MQ=255)

                                                                                  caaAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCAcaacaa                                                          >  2:803323/1‑140 (MQ=255)

                                                                                  caaAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCAcaacaa                                                          >  2:303149/1‑140 (MQ=255)

                                                                                    aaaaTGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAAc                                                        <  1:1069815/140‑1 (MQ=255)

                                                                                           aaCAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTaa                                                 <  2:1470336/140‑1 (MQ=255)

                                                                                             cAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcg                                               >  1:1492812‑M2/1‑46 (MQ=255)

                                                                                                gAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACa                                            >  1:970807/1‑140 (MQ=255)

                                                                                                 aataatCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcact                                           >  1:1405612‑M2/1‑42 (MQ=255)

                                                                                                          aaTGGGATGTT‑‑GCGCACAGTCAAAATAACTCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatg                                  >  2:1172818‑M2/1‑33 (MQ=255)

                                                                                                          aaTGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGca                                  <  2:872423/140‑1 (MQ=255)

                                                                                                          aaTGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGca                                  >  1:1241312/1‑140 (MQ=255)

                                                                                                            tGGGATGTT‑‑GCGCACAGTCAAAATAACTCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgcc                                >  1:673810‑M2/1‑31 (MQ=255)

                                                                                                              ggATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGcaacaa                              <  1:1393087/140‑1 (MQ=255)

                                                                                                               gATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACttt                                                                                                            <  2:383528/61‑1 (MQ=255)

                                                                                                               gATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACttt                                                                                                            >  1:383528/1‑61 (MQ=255)

                                                                                                               gATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTAGCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAAt                             <  1:498969/140‑1 (MQ=255)

                                                                                                               gATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAAt                             >  1:1615057/1‑140 (MQ=255)

                                                                                                                    t‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACt                        >  1:1236206/1‑140 (MQ=255)

                                                                                                                    t‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACt                        <  1:1212222/140‑1 (MQ=255)

                                                                                                                       gcgcACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACtt                       >  2:1305946/1‑140 (MQ=255)

                                                                                                                          cacaGTCAAAATAACTCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataat                    <  2:1408327‑M2/140‑122 (MQ=255)

                                                                                                                          cacaGTCAAAATAACTCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataat                    <  2:464260‑M2/140‑122 (MQ=255)

                                                                                                                          cacaGTCAAAATAACTCACtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataat                    <  2:1146314‑M2/140‑122 (MQ=255)

                                                                                                                          cacaGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACttaat                    >  2:1174227/1‑140 (MQ=255)

                                                                                                                           acaGTCAAAATAACTCACCGTAAATAATCAACTGCTATAAATATTCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACttaatg                   >  1:126783/1‑140 (MQ=255)

                                                                                                                             aGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACttaatgtt                 >  2:960255/1‑140 (MQ=255)

                                                                                                                               tCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaa               >  2:1269054/1‑140 (MQ=255)

                                                                                                                                   aaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGaa           <  2:1125175/140‑1 (MQ=255)

                                                                                                                                   aaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGaa           <  1:726960/140‑1 (MQ=255)

                                                                                                                                   aaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGaa           <  2:1429676/140‑1 (MQ=255)

                                                                                                                                       aCTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGt       <  2:693531/140‑1 (MQ=255)

                                                                                                                                        cTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGtt      <  2:531875/140‑1 (MQ=255)

                                                                                                                                         tCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGttt     >  2:438415/1‑140 (MQ=255)

                                                                                                                                           aCCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGGAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTa   <  2:895867/140‑1 (MQ=255)

                                                                                                                                           aCCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTa   >  1:928017/1‑140 (MQ=255)

                                                                                                                                            ccGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAc  <  2:1236206/140‑1 (MQ=255)

                                                                                                                                            ccGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTCAATGAAATGTTTTAc  <  2:1608227/140‑1 (MQ=255)

GCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTT‑‑GCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAC  >  NC_000913/1979263‑1979540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.