Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,101,507	0	T	G	30.0%	141.5 / 10.9	71	intergenic (+77/‑183)	sodA/kdgT	superoxide dismutase (Mn)/2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter
Reads supporting (aligned to +/- strand):  ref base T (7/42);  new base G (21/0);  total (28/43)
Fisher's exact test for biased strand distribution p-value = 3.07e-12
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

AGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAG  >  NC_000913/4101372‑4101645                                                                                                                                         |                                                                                                                                           agTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGttttt                                                                                                                                        >  2:1589430/1‑140 (MQ=255) agTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGttttt                                                                                                                                        >  1:820337/1‑140 (MQ=255)   ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGttttttt                                                                                                                                      >  1:1493445/1‑140 (MQ=255)   ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGttttttt                                                                                                                                      >  2:1150673/1‑140 (MQ=255)   ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGttttttt                                                                                                                                      >  2:68641/1‑140 (MQ=255)   ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGttttttt                                                                                                                                      >  1:1244562/1‑140 (MQ=255)   ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGttttttt                                                                                                                                      >  1:328621/1‑140 (MQ=255)   ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGttttttt                                                                                                                                      >  1:1298368/1‑140 (MQ=255)   ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGttttttt                                                                                                                                      >  1:1368017/1‑140 (MQ=255)   ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGgtttttt                                                                                                                                      >  1:1567805/1‑140 (MQ=255)   ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGgtttttt                                                                                                                                      >  1:1527173/1‑140 (MQ=255)   ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTACCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGgtttttt                                                                                                                                      >  2:1369248/1‑140 (MQ=255)        gAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTGTGAt                                                                                                                                 >  2:1304463/1‑140 (MQ=255)         aaCGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATc                                                                                                                                <  1:1444846/140‑1 (MQ=255)         aaCGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATc                                                                                                                                <  2:824927/140‑1 (MQ=255)             tggtgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTTTGATCAAtt                                                                                                                            >  1:928075/1‑140 (MQ=255)             tggtgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAAtt                                                                                                                            >  1:1026268/1‑140 (MQ=255)             tggtgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATCAAtt                                                                                                                            >  2:1304880/1‑140 (MQ=255)             tggtgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTGTGATCAAtt                                                                                                                            >  1:783551/1‑140 (MQ=255)                     tGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATa                                                                                                                    <  1:1589430/140‑1 (MQ=255)                     tGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GG‑TTTTTTGTGATCAATTTCAAAATaa                                                                                                                   <  2:1567805/140‑1 (MQ=255)                       ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTTTGATCAATTTTCAAATaaa                                                                                                                  >  1:42637/1‑140 (MQ=255)                       ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGGTCAATTTTaaaaaaaa                                                                                                                  >  1:1150060/1‑140 (MQ=255)                       ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGTTCAATTTTAAAATaaa                                                                                                                  >  2:308325/1‑140 (MQ=255)                       ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATCAATTTTAAAATaaa                                                                                                                  >  2:53879/1‑140 (MQ=255)                       ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATCAATTTTAAAATaaa                                                                                                                  >  2:518886/1‑140 (MQ=255)                       ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATCAATTTTAAAATaaa                                                                                                                  >  2:934887/1‑140 (MQ=255)                       ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATCAATTTCaaaaaaaa                                                                                                                  >  2:1103436/1‑140 (MQ=255)                       ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTGTGGTCAAATTCaaaaaaaa                                                                                                                  >  2:937784/1‑140 (MQ=255)                        gACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATTAATTTTAaaaaaaaa                                                                                                                 >  2:668866/1‑140 (MQ=255)                         aCGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATaaaaa                                                                                                                >  1:1318409/1‑140 (MQ=255)                           gAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACa                                                                                                              <  2:1026268/140‑1 (MQ=255)                                agcGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGAt                                                                                                         <  1:1304463/140‑1 (MQ=255)                                  cgtcACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGGTCAAATTTAAAATAAAAAAAATGATcc                                                                                                       >  2:1386806/4‑140 (MQ=255)                                     cACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGat                                                                                                    <  1:1198503/140‑1 (MQ=255)                                       cGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGGTCAATTTTAAAAAAAAAAAAAAAATCCGataa                                                                                                  >  2:934929/1‑140 (MQ=255)                                          tttGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATCAATTTTAAAATAAAAAAAAATATCCGataaaaa                                                                                               >  2:167367/1‑140 (MQ=255)                                            tGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGataaaaata                                                                                             <  1:402447/140‑1 (MQ=255)                                                   aaaaaaTAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATCAATTTTAAAAAAAAAAAAAAGAACCCaaaaaaaaaaaaaaac                                                                                      >  2:579464/1‑136 (MQ=255)                                                   aaaaaaTAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTGTGATCAATTTCAAAAAAAAAACAATGATCCGATAAAAAAAAAACaac                                                                                      >  2:206628/1‑138 (MQ=255)                                                        ataatCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACGGCGTTTc                                                                                 <  1:1225792/140‑1 (MQ=255)                                                          aatCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCaa                                                                               <  1:934929/140‑1 (MQ=255)                                                           atCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAAt                                                                              <  2:928075/140‑1 (MQ=255)                                                           atCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAAt                                                                              <  2:444331/140‑1 (MQ=255)                                                             cATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTg                                                                            <  1:653369/140‑1 (MQ=255)                                                               tttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGAt                                                                          <  1:423607/140‑1 (MQ=255)                                                               tttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGAt                                                                          <  1:579464/140‑1 (MQ=255)                                                                ttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGAtg                                                                         <  2:1540943/140‑1 (MQ=255)                                                                ttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGAtg                                                                         <  2:1310424/140‑1 (MQ=255)                                                                ttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGAtg                                                                         <  2:328621/140‑1 (MQ=255)                                                                ttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGAtg                                                                         <  1:1071569/140‑1 (MQ=255)                                                                ttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGAtg                                                                         <  2:1244562/140‑1 (MQ=255)                                                                  gccgccTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGAtgtg                                                                       <  2:427469/140‑1 (MQ=255)                                                                      ccTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATTAATTTTAAAATAAAAACAATGATCCGATAAAAAAAAAAAAACGCTTCAATTGATGTGGgtt                                                                   >  2:783264/1‑140 (MQ=255)                                                                      ccTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGttt                                                                   >  1:1379852/1‑140 (MQ=255)                                                                        tgctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTg                                                                 <  2:1298368/140‑1 (MQ=255)                                                                        tgctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTg                                                                 <  2:1368017/140‑1 (MQ=255)                                                                          ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGAt                                                               <  1:1103436/140‑1 (MQ=255)                                                                          ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGAt                                                               <  1:1150673/140‑1 (MQ=255)                                                                          ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGAt                                                               <  2:1503077/140‑1 (MQ=255)                                                                          ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGAt                                                               <  2:585767/140‑1 (MQ=255)                                                                          ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGAt                                                               <  1:53879/140‑1 (MQ=255)                                                                          ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTGTGATCAATTTTAAAATAAAAACAAAGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTTAt                                                               >  2:845574/1‑140 (MQ=255)                                                                          ctgcAATGAGGCGTATAAGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGAt                                                               <  2:1506845/140‑1 (MQ=255)                                                                            gcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCa                                                             <  2:1564738/140‑1 (MQ=255)                                                                                  aGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTa                                                       <  2:1318409/140‑1 (MQ=255)                                                                                  aGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTa                                                       <  2:1572509/140‑1 (MQ=255)                                                                                           ggCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTaaa                                              <  1:937784/140‑1 (MQ=255)                                                                                            gCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTGTGGTCAATTTTAAAATAAAAACAATGATCCGATAAAAATAAAAAAGCGTTTTAATTGATGTGGTTTTGATCACTTTTATTGATTaaaa                                             >  2:1360653/1‑139 (MQ=255)                                                                                             ccGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAaatg                                            <  1:854821/140‑1 (MQ=255)                                                                                             ccGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAaatg                                            <  2:917520/140‑1 (MQ=255)                                                                                              cGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTTTGATCAATTTTAAAAAAAAAACAAAGATCCGATAAAAAAAAAACAACGGTTTAATTTATTTGGGTTTTTTCACTTTTTTTTATTAaatga                                           >  2:363625/1‑140 (MQ=255)                                                                                              cGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGG‑GGGTTTTTTGTGATCAATTTCAAAATAAAAACAATGCTCCGATAAAAAAAAAACAGCGTTTAAATTGATGTGGTTTTTATCACTTTTATTTATTAaatga                                           >  1:129812/1‑140 (MQ=255)                                                                                               gCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAaatgaa                                          <  1:1571341/140‑1 (MQ=255)                                                                                                 atatCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTTGTTAATTTTTAAAAAAAAAAAAAT‑AACCGATAAAAAAAAAAAAACGGTTCAATTTATGTGGTTTTTATCACTTTTTTTTTTtaaataaaaa                                        >  2:1221242/1‑138 (MQ=255)                                                                                                 atatCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGGTCAATTTTAAAAAAAAAAAAATGATCCGATAAAAAAAAAAAAGCGTTTCAATTTATGTGGTTTTTTTTACTTTTTTTGATTAaatgaatt                                        >  2:1206333/1‑139 (MQ=255)                                                                                                 atatCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTGTGGTCAATTTTAAAAAAAAAAAAAAAATCCGATAAAAATAAAAAAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAaatgaatt                                        >  2:31293/1‑139 (MQ=255)                                                                                                  tatCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGt                                       <  2:1493445/140‑1 (MQ=255)                                                                                                             aaaaTGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGtt                            <  1:1452108/140‑1 (MQ=255)                                                                                                             aaaaTGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGtt                            <  1:1206333/140‑1 (MQ=255)                                                                                                                aTGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTcc                         <  2:349930/140‑1 (MQ=255)                                                                                                                       aTCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTTAAAATAAAAACAATGATCCGATAAAAATAAAAAAGCGTTTCAATTGATGTGGGTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAaca                  >  1:510145/1‑140 (MQ=255)                                                                                                                        tCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAacac                 <  2:783551/140‑1 (MQ=255)                                                                                                                               cggcggT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCt          >  1:918569/1‑140 (MQ=255)                                                                                                                               cggcggT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCt          <  2:1277832/140‑1 (MQ=255)                                                                                                                                  cggT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCa       <  1:1369121/140‑1 (MQ=255)                                                                                                                                    gt‑ggtTTTTTTTTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCAtt     >  2:144751/1‑140 (MQ=255)                                                                                                                                    gt‑gggTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCaat     >  1:1366976/1‑138 (MQ=255)                                                                                                                                     t‑ggtTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTg    <  1:167367/140‑1 (MQ=255)                                                                                                                                       ggtTTTTTTGTGATCAATTTCAAAAT‑AAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAg  <  1:308325/140‑1 (MQ=255)                                                                                                                                         |                                                                                                                                           AGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAG  >  NC_000913/4101372‑4101645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑