mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,377,140 | 0 | A | C | 34.4% | 46.0 / 11.5 | 32 | K103N (AAA→AAC) | ycjS | putative oxidoreductase YcjS |
| * | NC_000913 | 4,101,514 | 0 | G | T | 32.0% | 42.1 / 10.8 | 25 | intergenic (+84/‑176) | sodA/kdgT | superoxide dismutase (Mn)/2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter |
| * | NC_000913 | 4,296,060 | 0 | C | T | 25.8% | 117.3 / 40.6 | 66 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 35 (0.810) | 6 (0.150) | 5/260 | 3.7 | 12.5% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 51 (1.270) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 1462089 = | 37 (0.860) | 4 (0.100) | 4/254 | 4.0 | 9.2% | coding (1197/1206 nt) | paaJ | beta‑ketoadipyl‑CoA thiolase |
| ? | NC_000913 | 1462223 = | 45 (1.150) | coding (99/1314 nt) | paaK | phenylacetate‑CoA ligase | |||||
| * | ? | NC_000913 | 4542682 = | 35 (0.810) | 5 (0.120) | 4/260 | 4.1 | 10.7% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 51 (1.270) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 2864857 | 59 (1.370) | 3 (0.070) | 3/274 | 4.7 | 5.0% | coding (622/777 nt) | ygbM | putative 2‑oxo‑tetronate isomerase YgbM |
| ? | NC_000913 | 2864861 = | 56 (1.320) | coding (626/777 nt) | ygbM | putative 2‑oxo‑tetronate isomerase YgbM | |||||
| * | ? | NC_000913 | = 1978486 | 0 (0.000) | 3 (0.070) | 3/276 | 4.7 | 100% | intergenic (‑289/+32) | flhD/insB‑5 | DNA‑binding transcriptional dual regulator FlhD/IS1 protein InsB |
| ? | NC_000913 | = 2070271 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||