New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1780767 =	67 (0.920)	4 (0.060)	4/260	6.4	6.7%	coding (367/939 nt)	ydiR	putative electron transfer flavoprotein subunit YdiR
	?	NC_000913	1780852 =	48 (0.710)					coding (452/939 nt)	ydiR	putative electron transfer flavoprotein subunit YdiR
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCCACGGCGGTGGATATTGTCGATGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAA  >  NC_000913/1780727‑1780985                                                                                                                               |                                                                                                                                      tGCCACGGCGGGGGGTATTGTCGATGGTCACATTTGCGCCGAACACCGGATGTATGGGGGGGTAACGGTCCCTCCAGAAAAGATCAAAAACCCCCCGGGGGGCATTAACCCTTCA‑CCCGGGGTGCAAGAACCGTGGAccc                                                                                                                         >  2:525610/1‑139 (MQ=255) tGCCACGGCGGAGGATATTGTCGATGGTCCCATTTGCGCCGAACACCGGATGTATGGCGGGTTTGGGTTTCCTCAGGACAAGAAGAAAAGCCCGCTGGCGTTCACTTCCCTTTCA‑CACCGGGTGTAGGAACCGCGCACCa                                                                                                                         >  2:869654/1‑140 (MQ=255)  gCCACGGCGGTGGATATTGTCGATGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAg                                                                                                                        <  1:627856/140‑1 (MQ=255)   ccACGGCGGTGGATATTGTCGATGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGGTTGCGTTTGCTCAGGGAAAAATCAACAACCCGCCGGGGGTCATTACCCCTGCA‑CCCGGGGTTTAGGAACCCTGCACCAgg                                                                                                                       >  2:436515/1‑139 (MQ=255)       ggcggTGGATATTGTCGATGGTCACATTTGCGCCGAACCCCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATa                                                                                                                   <  1:561832/140‑1 (MQ=255)             ggATATTGTCGATGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGGTTGCGTTTGCCCAGGGAAAGAATAAAAGCCCGCCGGGGGGCATTTCCCCTGGACCCCGGGGTTTAGG‑ACCGGGCGCCCGAGATACCtctc                                                                                                             >  2:285346/1‑140 (MQ=255)                   tGTCGATGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGGTAACGTTCGCTCCAGAAAAGAAAAAAAACCCGCCGGCGGTCATTTCCCCTGCA‑CCCGGGGTTCAGGAAACCTGCACCCGGGATACCTCtcatcaat                                                                                                       >  2:381956/1‑138 (MQ=255)                        aTGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGCGATACCTCTCATCAGGTCCCg                                                                                                  >  2:435747/1‑140 (MQ=255)                             cacaTTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGa                                                                                             >  2:447848/1‑140 (MQ=255)                               caTTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGCTCAACAGGCCGCTGGCGGTCATTCCCCTTGCA‑CCCCGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGaaa                                                                                           <  2:1031280/140‑1 (MQ=255)                                 tttGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACg                                                                                         <  1:168335/140‑1 (MQ=255)                                 tttGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACg                                                                                         <  1:418898/140‑1 (MQ=255)                                 tttGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACg                                                                                         <  1:657902/140‑1 (MQ=255)                                 tttGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACg                                                                                         <  2:197293/140‑1 (MQ=255)                                   tGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCACTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGt                                                                                       >  1:21503/1‑140 (MQ=255)                                     cgcCGAACACCGGATGTATGGCGGGTTAGCGTTTGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTTCA‑CCCGGGGTTCAGGGACCGTGCACCAGTGATAACCCCCATCAGTGCCCCGCAGAAAccggac                                                                                     >  2:1175630/1‑135 (MQ=255)                                      gcCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTAcc                                                                                    <  2:558899/140‑1 (MQ=255)                                      gcCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTAcc                                                                                    <  1:1175729/140‑1 (MQ=255)                                      gcCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTAcc                                                                                    >  1:1186100/1‑140 (MQ=255)                                               cGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCATGCA‑CCCGGTGGTCAGGAACCGTGCACCCGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGc                                                                           >  1:1190915/1‑140 (MQ=255)                                                  aTGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTcc                                                                        <  1:1191134/140‑1 (MQ=255)                                                  aTGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTcc                                                                        <  1:1217103/140‑1 (MQ=255)                                                     tATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCcgcg                                                                     <  1:435747/140‑1 (MQ=255)                                                         gCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCAt                                                                 >  2:881507/1‑140 (MQ=255)                                                                              aaaaGATCAACAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGc                                            <  2:21503/140‑1 (MQ=255)                                                                                   aTCAACAGCCCGCTGGCGATCATTACCC‑TGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCg                                      >  1:961827/1‑140 (MQ=255)                                                                                     cAACAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGa                                     <  1:881507/140‑1 (MQ=255)                                                                                       aCAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGaaa                                   >  1:1065966/1‑140 (MQ=255)                                                                                       aCAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGaaa                                   >  2:174587/1‑140 (MQ=255)                                                                                       aCAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGaaa                                   >  2:91210/1‑140 (MQ=255)                                                                                               cTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCCCCAGTGATACCTCTCATCAGTGCCCGACAGAATCGGTCCCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAag                           <  2:598279/140‑1 (MQ=255)                                                                                               cTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAag                           <  1:285346/140‑1 (MQ=255)                                                                                               cTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAag                           <  1:525610/140‑1 (MQ=255)                                                                                                 ggCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAagca                         <  1:869654/140‑1 (MQ=255)                                                                                                    gATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCg                      <  1:91210/140‑1 (MQ=255)                                                                                                    gATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCg                      <  1:116906/140‑1 (MQ=255)                                                                                                    gATCATTACCCTTCCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATTCCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCg                      <  2:491681/140‑1 (MQ=255)                                                                                                     aTCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGt                     >  2:995748/1‑140 (MQ=255)                                                                                                      tCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTg                    <  1:618301/140‑1 (MQ=255)                                                                                                         ttACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGAc                 <  1:447848/140‑1 (MQ=255)                                                                                                               ttGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGagc           <  2:1190915/140‑1 (MQ=255)                                                                                                                tGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATTAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGagca          >  1:453561/1‑140 (MQ=255)                                                                                                                tGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGagca          >  2:13642/1‑140 (MQ=255)                                                                                                                 gCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGagcaa         >  2:513789/1‑140 (MQ=255)                                                                                                                 gCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGagcaa         >  1:108864/1‑140 (MQ=255)                                                                                                                  cA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCACCCAGCGTGGAGCTGagcaaa        >  2:746986/1‑140 (MQ=255)                                                                                                                     cccGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGagcaaagc      >  2:207605/1‑140 (MQ=255)                                                                                                                     cccGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGagcaaagc      >  1:200986/1‑140 (MQ=255)                                                                                                                       cGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGagcaaagcaa    >  1:699046/1‑140 (MQ=255)                                                                                                                        ggTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAgcaaagcaaa   >  1:498845/1‑140 (MQ=255)                                                                                                                        ggTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAgcaaagcaaa   >  2:611783/1‑140 (MQ=255)                                                                                                                         gtgtTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCaaaa  <  1:889474/140‑1 (MQ=255)                                                                                                                               |                                                                                                                                      TGCCACGGCGGTGGATATTGTCGATGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCTCAGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCA‑CCCGGTGTTCAGGAACCGTGCACCAGTGATACCTCTCATCAGTGCCCGACAGAAACGGTACCTTATGTTGCTCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCCGCAAGCAGCGTGGACCTGAGCAAAGCAAAA  >  NC_000913/1780727‑1780985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.