| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,593,525 | A→C | pseudogene (4562/5422 nt) | yneO ← | AIDA‑I family autotransporter YneO |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,593,525 | 0 | A | C | 98.2% | 207.3 / ‑3.3 | 56 | pseudogene (4562/5422 nt) | yneO | AIDA‑I family autotransporter YneO |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base C (31/24); minor base . (0/1); total (31/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.46e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.24e-01 | |||||||||||
CTGCGCGTTGCTACTCCACTGCGCCAAATCGCCGCCTAGCTGCAATACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGACCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTCCGGCCTCCGGGCGATAAACTGATGGGCCTTCC > NC_000913/1593388‑1593661 | cTGCGCGTTGCTACTCCACTGCGCCAAATCGCCGCCTAGCTGCAGTACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGccc < 1:1126052/140‑1 (MQ=255) tGCTACTCCACTGCGCCAAATCGCCGCCTAGCTGCAATACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGaa > 1:1068541/1‑140 (MQ=255) tGCTACTCCACTGCGCCAAATCGCCGCCTAGCTGCAATACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGaa > 2:539919/1‑140 (MQ=255) ctccaCTCCACTGCGCCAAATCGCCGCCTAGCTGCAATACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGaa < 1:530962/136‑1 (MQ=255) aCTCCACTGCGCCAAATCGCCGCCTAGCTGCAATACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCa < 1:50424/140‑1 (MQ=255) ccACTGCGCCAAATCGCCGCCTAGCTGCAATACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTg < 1:960599/140‑1 (MQ=255) ccACTGCGCCAAATCGCCGCCTAGCTGCAATACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTg < 1:17800/140‑1 (MQ=255) ccACTGCGCCAAATCGCCGCCTAGCTGCAATACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTg < 1:407607/140‑1 (MQ=255) cTGCGCCAAATCGCCGCCTAGCTGCAATACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAAt < 1:291473/140‑1 (MQ=255) cTGCGCCAAATCGCCGCCTAGCTGCAATACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAAt < 1:632011/140‑1 (MQ=255) cTGCGCCAAATCGCCGCCTAGCTGCAATACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAAt > 2:646853/1‑140 (MQ=255) cTGCGCCAAATCGCCGCCTAGCTGCAATACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAAt > 1:1137381/1‑140 (MQ=255) cgcCAAATCGCCGCCTAGCTGCAATACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTg > 1:865764/1‑140 (MQ=255) cAAATCGCCGCCTAGCTGCAATACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGCCATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGtat > 1:839266/1‑140 (MQ=255) aTCGCCGCCTAGCTGCAATACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACt < 2:405835/140‑1 (MQ=255) ccgccTAGCTGCAATACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCgg < 1:245921/140‑1 (MQ=255) tGCAATACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCG‑CCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGa < 2:976624/140‑1 (MQ=255) aTACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACgg < 2:882156/140‑1 (MQ=255) aTACATAGCGATTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACATTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACgg < 1:12816/140‑1 (MQ=255) tACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGt < 1:619035/140‑1 (MQ=255) aTAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCgt > 1:311450/1‑140 (MQ=255) aGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCgtgc > 2:135373/1‑139 (MQ=255) gTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAAc < 1:210177/140‑1 (MQ=255) gTTAGCCTGAGTAGTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAAc < 2:867221/140‑1 (MQ=255) aGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGAt > 1:1117491/1‑140 (MQ=255) ccTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATgg < 1:646853/140‑1 (MQ=255) gTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTaaa > 1:937828/1‑140 (MQ=255) tATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAAc < 2:865764/140‑1 (MQ=255) ttAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGc > 2:819311/1‑140 (MQ=255) aCCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTgg > 1:690493/1‑140 (MQ=255) aCCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTgg > 1:840329/1‑140 (MQ=255) aCCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTgg > 2:4193/1‑140 (MQ=255) tCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGc < 1:459098/140‑1 (MQ=255) aCCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCgg < 2:311450/140‑1 (MQ=255) ccTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGt < 2:968511/140‑1 (MQ=255) ttGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTg > 2:300817/1‑140 (MQ=255) gTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGata > 2:820612/1‑140 (MQ=255) gTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGata > 2:202664/1‑140 (MQ=255) gTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGc > 1:307176/1‑140 (MQ=255) cccTCCGACATGAGGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTc > 1:648811/1‑140 (MQ=255) ccTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTcc < 1:819311/140‑1 (MQ=255) cTCCGACATGACGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTCCg > 2:798807/1‑140 (MQ=255) aTGAGGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTCCGGCCTCCg < 2:648811/140‑1 (MQ=255) aCGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATTCTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTCCGGCCTCCGGGc < 1:303291/140‑1 (MQ=255) cGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTCCGGCCTCCGGGCg > 1:487126/1‑140 (MQ=255) cGCATCCACATACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTCCGGCCTCCGGGCg > 1:160518/1‑140 (MQ=255) aTACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTCCGGCCTCCGGGCGATAAACTGa > 1:706908/1‑140 (MQ=255) aTACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTCCGGCCTCCGGGCGATAAACTGa > 1:183780/1‑140 (MQ=255) tACTGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTCCGGCCTCCGGGCGATAAACTGAt < 1:637374/140‑1 (MQ=255) tGCTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTCCGGCCTCCGGGCGATAAACTGATggg > 1:1161327/1‑140 (MQ=255) cTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTCCGGCCTCCGGGCGATAAACTGATGGGcc > 2:808087/1‑140 (MQ=255) cTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTCCGGCCTCCGGGCGATAAACTGATGGGcc > 2:97474/1‑140 (MQ=255) cTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTCCGGCCTCCGGGCGATAAACTGATGGGcc > 1:853218/1‑140 (MQ=255) cTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTCCGGCCTCCGGGCGATAAACTGATGGGcc > 1:445125/1‑140 (MQ=255) cTTGCCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTCCGGCCTCCGGGCGATAAACTGATGGGcc > 2:1158823/1‑140 (MQ=255) cTTACCGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTCCGGCCTCCGGGCGATAAACTGATGGGcc > 1:23022/1‑140 (MQ=255) ccGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTCCGGCCTCCGGGCGATAAACTGATGGGCCTTcc < 2:1068541/140‑1 (MQ=255) ccGCCCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTCCGGCCTCCGGGCGATAAACTGATGGGCCTTcc < 2:109048/140‑1 (MQ=255) | CTGCGCGTTGCTACTCCACTGCGCCAAATCGCCGCCTAGCTGCAATACATAGCGGTTAGCCTGAGTATTTAGCTGACCGTCACCGGCCCTTGAACGTTCGTGCCCTCCGACATGACGCATCCACATACTGCTTGCCGACCCCTGAGAATGCAGTGAATCTGTATACTGCGGCTCACCCAGACGGTCGTGTAAACGATGGCTAAACAGCGAGTTGGCTGCGGCAATGTTGCTGATATAGCTTCCGGCCTCCGGGCGATAAACTGATGGGCCTTCC > NC_000913/1593388‑1593661 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |