| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1219194 = | 225 (1.590) | 4 (0.030) | 3/262 | 9.5 | 2.0% | coding (212/219 nt) | ymgF | inner membrane protein that interacts with cell division proteins |
| ? | NC_000913 | 1219646 = | 175 (1.320) | pseudogene (46/2648 nt) | ycgH | putative transporter component, N‑terminal fragment | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTTCGGTGATATATAAAAACAACCGTGATAACACCAGGGTTGACAACTATTTGCGCAATAATGCCTTTCCTTCAATGATCCAGGCGTTCACTGCCAGCAACCCATTCAGCCGCATACTGACAGTGAGAAACTGAAAGATTATTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1219340‑1219194‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttattgctCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGAC > NC_000913/1219646‑1219783 ATTTCGGTGATATATAAAAACAACCGTGATAACACCAGGGTTGACAACTATTTGCGCAATAATGCCTTTCCTTCAATGATCCAGGCGTTCACTGCCAGCAACCCATTCAGCCGCATACTGACAGTGAGAAACTGAAAGAT < 2:2345484/140‑1 TTTCGGTGATATATAAAAACAACCGTGATAACACCAGGGTTGACAACTATTTGCGCAATAATGCCTTTCCTTCAATGATCCAGGCGTTCACTGCCAGCAACCCATTCAGCCGCATACTGACAGTGAGAAACTGAAAGATT < 2:1747586/140‑1 TTCGGTGATATATAAAAACAACCGTGATAACACCAGGGTTGACAACTATTTGCGCAATAATGCCTTTCCTTCAATGATCCAGGCGTTCACTGCCAGCAACCCATTCAGCCGCATACTGACAGTGAGAAACTGAAAGATTA < 2:273657/140‑1 TTCGGTGATATATAAAAACAACCGTGATAACACCAGGGTTGACAACTATTTGCGCAATAATGCCTTTCCTTCAATGATCCAGGCGTTCACTGCCAGCAACCCATTCAGCCGCATACTGACAGTGAGAAACTGAAAGATTA < 2:1049043/140‑1 GTGATATATAAAAACAACCGTGATAACACCAGGGTTGACAACTATTTGCGCAATAATGCCTTTCCTTCAATGATCCAGGCGTTCACTGCCAGCAACCCATTCAGCCGCATACTGACAGTGAGAAACTGAAAGATTATTGC > 2:1297357/1‑140 GTGATATATAAAAACAACCGTGATAACACCAGGGTTGACAACTATTTGCGCAATAATGCCTTTCCTTCAATGATCCAGGCGTTCACTGCCAGCAACCCATTCAGCCGCATACTGACAGTGAGAAACTGAAAGATTATTGC > 2:897581/1‑140 GTGATATATAAAAACAACCGTGATAACACCAGGGTTGACAACTATTTGCGCAATAATGCCTTTCCTTCAATGATCCAGGCGTTCACTGCCAGCAACCCATTCAGCCGCATACTGACAGTGAGAAACTGAAAGATTATTGC > 2:2318144/1‑140 GTGATATATAAAAACAACCGTGATAACACCAGGGTTGACAACTATTTGCGCAATAATGCCTTTCCTTCAATGATCCAGGCGTTCACTGCCAGCAACCCATTCAGCCGCATACTGACAGTGAGAAACTGAAAGATTATTGC > 2:2188700/1‑140 GTGATATATAAAAACAACCGTGATAACACCAGGGTTGACAACTATTTGCGCAATAATGCCTTTCCTTCAATGATCCAGGCGTTCACTGCCAGCAACCCATTCAGCCGCATACTGACAGTGAGAAACTGAAAGATTATTGC > 2:1860377/1‑140 GTGATATATAAAAACAACCGTGATAACACCAGGGTTGACAACTATTTGCGCAATAATGCCTTTCCTTCAATGATCCAGGCGTTCACTGCCAGCAACCCATTCAGCCGCATACTGACAGTGAGAAACTGAAAGATTATTGC > 1:834007/1‑140 GTGATATATAAAAACAACCGTGATAACACCAGGGTTGACAACTATTTGCGCAATAATGCCTTTCCTTCAATGATCCAGGCGTTCACTGCCAGCAACCCATTCAGCCGCATACTGACAGTGAGAAACTGAAAGATTATTGC > 1:82380/1‑140 GTGATATATAAAAACAACCGTGATAACACCAGGGTTGACAACTATTTGCGCAATAATGCCTTTCCTTCAATGATCCAGGCGTTCACTGCCAGCAACCCATTCAGCCGCATACTGACAGTGAGAAACTGAAAGATTATTGC > 1:681717/1‑140 TGATATATAAAAACAACCGTGATAACACCAGGGTTGACAACTATTTGCGCAATAATGCCTTTCCTTCAATGATCCAGGCGTTCACTGCCAGCAACCCATTCAGCCGCATACTGACAGTGAGAAACTGAAAGATTATTGCT < 1:1580337/140‑1 ATATATAAAAACAACCGTGATAACACCAGGGTTGACAACTATTTTCGCAATAACGCCTTTCCTTCAATGATCCAGGCGTTCACTGCCAGCAACCCATTCAGCCGCATACTGACAGTGAGAAACTGAAAGATTATTGCTCa > 2:1374760/1‑139 TATTTGCGCAATAATGCCTTTCCTTCAATGATCCAGGCGTTCACTGCCAGCAACCCATTCAGCCGCATACTGACAGTGAGAAACTGAAAGATTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGA > 2:1208880/1‑140 TATTTGCGCAATAATGCCTTTCCTTCAATGATCCAGGCGTTCACTGCCAGCAACCCATTCAGCCGCATACTGACAGTGAGAAACTGAAAGATTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATG < 2:655951/139‑1 TATTTGCGCAATAATGCCTTTCCTTCAATGATCCAGGCGTTCACTGCCAGCAACCCATTCAGCCGCATACTGACAGTGAGAAACTGAAAGATTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATG > 1:655951/1‑139 TATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTG < 2:1864122/140‑1 ATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGA > 2:1008434/1‑140 ATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGA > 2:308117/1‑140 ATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGA > 2:486372/1‑140 ATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGGATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGA > 2:1001823/1‑140 CTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGAC < 1:734517/140‑1 CTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGAC < 1:1002107/140‑1 CTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGAC < 1:184505/140‑1 CTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGAC > 2:1081309/1‑140 ATTTCGGTGATATATAAAAACAACCGTGATAACACCAGGGTTGACAACTATTTGCGCAATAATGCCTTTCCTTCAATGATCCAGGCGTTCACTGCCAGCAACCCATTCAGCCGCATACTGACAGTGAGAAACTGAAAGATTATTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1219340‑1219194‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttattgctCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCGATAAGTAATGGAGAGTATCTAACCACTGAAGAC > NC_000913/1219646‑1219783 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |