Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,001,918	0	A	C	27.1%	175.6 / 26.8	85	intergenic (‑129/+192)	fliA/fliC	RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein
Reads supporting (aligned to +/- strand):  ref base A (57/5);  new base C (0/23);  total (57/28)
Fisher's exact test for biased strand distribution p-value = 2.84e-16
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

GAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCA  >  NC_000913/2001782‑2002055                                                                                                                                          |                                                                                                                                          gAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAAccc                                                                                                                                        >  1:1980729/1‑140 (MQ=255)  aaTTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAAcccc                                                                                                                                       >  1:2311501/1‑140 (MQ=255)  aaTTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAAcccc                                                                                                                                       >  1:1813946/1‑140 (MQ=255)   aTTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCccg                                                                                                                                      >  2:1685089/1‑140 (MQ=255)        cGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGt                                                                                                                                 >  2:1866254/1‑140 (MQ=255)            aaaCAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCg                                                                                                                             >  2:2343485/1‑140 (MQ=255)            aaaCAGCCCTGCGTTATATGAGTTAGCGGCATGATTATCCGTTTCTGCAGGGTTTTTAAGCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑AAAATTCCAGGCAAAAAAAACCCCCGCCGGTGGCg                                                                                                                             <  1:1258893/140‑1 (MQ=255)                 gCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGaa                                                                                                                        >  1:1820690/1‑140 (MQ=255)                    cTGCTTTATATGATTTATCGGCATGATTATCCTTTTCTGCGGGTTTTTTAATCGGACGATTAGGGGGTGAAATGAGGGGTTATTGGGGGGTTACAGG‑TAAATCCCAGGCAGAAAAAACCCCCGCCGGTGGCGGGGAAGCa                                                                                                                     <  2:172779/140‑1 (MQ=255)                     tGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCAc                                                                                                                    >  1:422603/1‑140 (MQ=255)                     tGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCAc                                                                                                                    >  2:464309/1‑140 (MQ=255)                     tGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCAc                                                                                                                    >  2:1035854/1‑140 (MQ=255)                       cGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGt                                                                                                                  >  2:56481/1‑140 (MQ=255)                            tatGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTg                                                                                                             >  2:1130530/1‑140 (MQ=255)                                 gTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTTGTGGGTGAAATGAGGGGGTATTTGGGGGTTACAGG‑GAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACaaa                                                                                                        >  2:55203/1‑140 (MQ=255)                                 gTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACaaa                                                                                                        >  1:1908991/1‑140 (MQ=255)                                 gTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACaaa                                                                                                        >  1:2129597/1‑140 (MQ=255)                                 gTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACaaa                                                                                                        >  1:443217/1‑140 (MQ=255)                                 gTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACaaa                                                                                                        >  2:736830/1‑140 (MQ=255)                                 gTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACaaa                                                                                                        >  1:1131781/1‑140 (MQ=255)                                 gTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGGGGGTGAAATGAGGGGGTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACaaa                                                                                                        >  2:576185/1‑140 (MQ=255)                                  ttATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAAt                                                                                                       >  2:937885/1‑140 (MQ=255)                                    aTCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTg                                                                                                     >  1:590691/1‑140 (MQ=255)                                    aTCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTg                                                                                                     >  2:1556146/1‑140 (MQ=255)                                    aTCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTg                                                                                                     >  1:2165405/1‑140 (MQ=255)                                    aTCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTg                                                                                                     >  2:2260944/1‑140 (MQ=255)                                    aTCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑CAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTg                                                                                                     >  1:611811/1‑140 (MQ=255)                                      cGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTgcg                                                                                                   >  2:1653975/1‑140 (MQ=255)                                          aTGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCttt                                                                                               >  2:1057222/1‑140 (MQ=255)                                          aTGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCttt                                                                                               >  2:2296006/1‑140 (MQ=255)                                                      ttCTGCGGGGTTTTTAATCGGACGATTGGTGGGTAAAATGAGGGGTTATTGGGGGGTTACAGG‑TAAATTCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGAt                                                                                   <  2:1820690/140‑1 (MQ=255)                                                      ttCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGCAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCggcc                                                                                   >  2:1384015/1‑138 (MQ=255)                                                       tCTGGAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGTTTATTGGGGGTTTACAGA‑TAAATTCCAGGAAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATg                                                                                  <  2:443217/140‑1 (MQ=255)                                                       tCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGTTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATg                                                                                  >  2:592374/1‑140 (MQ=255)                                                       tCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATg                                                                                  >  1:1004233/1‑140 (MQ=255)                                                        cTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTTGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgc                                                                                 >  2:1980183/1‑140 (MQ=255)                                                        cTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgc                                                                                 >  1:2131997/1‑140 (MQ=255)                                                        cTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgc                                                                                 >  1:205081/1‑140 (MQ=255)                                                               ttttttAATCGGAGGATTGGGGGGGGAAGTGGGGGGTTTTTGGGGGGTTACAGG‑AAAATCCCGGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTaa                                                                          <  2:735182/139‑1 (MQ=255)                                                               gTTTTTAACCGGACGATTGGTGGGTGAAAGGAGGGTTTATTTGGGGGTTACAGG‑TAAATCCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTaa                                                                          <  2:1980729/140‑1 (MQ=255)                                                                tttttAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTaaa                                                                         >  1:1396970/1‑140 (MQ=255)                                                                  tttAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACg                                                                       >  1:793/1‑140 (MQ=255)                                                                         ggACGATTAGTGGGTGAAATGGGGGGTTTTTGGGGGTTTACAGG‑TAAATTCCAGGCAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGGTGCGGCGTAAACGCCTTATc                                                                <  1:1713121/140‑1 (MQ=255)                                                                         ggACGATTAGTGGGTAAAATGGGGGTTTTTTGGGGGGTTACAGA‑AAAATTCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATc                                                                <  2:936614/140‑1 (MQ=38)                                                                          gACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATcc                                                               >  2:389391/1‑140 (MQ=255)                                                                          gACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATcc                                                               >  1:312245/1‑140 (MQ=255)                                                                          gACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATcc                                                               >  1:1490295/1‑140 (MQ=255)                                                                           aagATTAGTGGGGAAAATGGGGGTTTATTTGGGGGTGACAGG‑TAAATTCCAGGAAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCg                                                              <  1:1035854/138‑1 (MQ=38)                                                                           aCGTTTGGTGGGTAAAAGGGGGGTTTATTGGGGGTTTACAGG‑TAAATTCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCg                                                              <  1:736830/140‑1 (MQ=37)                                                                           aCGATTAGGGGGTAAAATG‑GGGGTTTTTTGGGGGTTTAAGGTTAAATGCCGGAAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCg                                                              <  2:793/140‑1 (MQ=25)                                                                             gATTAGTGGGTGAAATGAGGGGTTATTTGGGGTTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGc                                                            <  1:592374/140‑1 (MQ=255)                                                                               ttAGTGGGTAAAAGGAGGGTTTATTGGGGGGTTACAGG‑TAAATCCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCt                                                          <  1:1866254/140‑1 (MQ=38)                                                                                     ggTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCg                                                              <  1:766250/130‑1 (MQ=255)                                                                                     ggTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCg                                                              >  2:766250/1‑130 (MQ=255)                                                                                     ggTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaaac                                                    >  1:936614/1‑139 (MQ=255)                                                                                      gTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaaaaa                                                   >  1:1550770/1‑140 (MQ=255)                                                                                       tGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAt                                                  >  1:975057/1‑140 (MQ=255)                                                                                       tGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAt                                                  >  1:1799472/1‑140 (MQ=255)                                                                                         aaaTGAGGGGTTTTTTGGGGGTTAAAGG‑AAAATTCCAGGCAAAAAAACCCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCAGCCTGCAAAAAtgt                                                <  2:611811/140‑1 (MQ=38)                                                                                         aaaTGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtgt                                                >  2:1668175/1‑140 (MQ=255)                                                                                         aaaTGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtgt                                                >  1:1677094/1‑140 (MQ=255)                                                                                         aaaTGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtgt                                                >  1:1713872/1‑140 (MQ=255)                                                                                             ggggggTTTTTTGGGGGTTACAGG‑TAAATTCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCaa                                            <  1:1184656/138‑1 (MQ=255)                                                                                              gggggTTTTTGGGGGGTTAAAGT‑AAAATTCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCaaa                                           <  2:1799472/139‑1 (MQ=37)                                                                                               ggggTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAAt                                          >  1:1788071/1‑140 (MQ=255)                                                                                                ggtttATTTGGGGGTTACAGG‑AAAATCCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAAtt                                         <  2:422603/137‑1 (MQ=38)                                                                                                gggTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAAtt                                         >  1:2357900/1‑140 (MQ=255)                                                                                                          ggggTTACAGG‑TAAATCCCAGGAAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTg                               <  1:1734968/140‑1 (MQ=255)                                                                                                           gggTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGc                              >  1:1580726/1‑140 (MQ=255)                                                                                                           gggTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGc                              >  2:375660/1‑140 (MQ=255)                                                                                                           gggTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGc                              >  2:1428227/1‑140 (MQ=255)                                                                                                            ggTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCa                             >  2:503201/1‑140 (MQ=255)                                                                                                             gTTACAGG‑AAAATTCCAGGAAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCaa                            <  1:1685089/140‑1 (MQ=255)                                                                                                              ttACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAAt                           >  1:2011425/1‑140 (MQ=255)                                                                                                                aCAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTc                         >  2:1516582/1‑140 (MQ=255)                                                                                                                 aaGG‑TAAATTCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCa                        <  2:1490295/139‑1 (MQ=255)                                                                                                                  aagttAAATTCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCa                        <  2:205081/136‑1 (MQ=255)                                                                                                                    g‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACt                     >  2:407379/1‑140 (MQ=255)                                                                                                                       aaaTTCCAGGCAGAAAAAAACCCCGCCGGTTGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTg                   <  1:1980183/140‑1 (MQ=255)                                                                                                                       aaaTTCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTg                   <  1:464309/140‑1 (MQ=255)                                                                                                                       aaaTTCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTg                   <  2:2131997/140‑1 (MQ=255)                                                                                                                            cgagaaaGAAAAAGCCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGc              <  2:2311501/134‑1 (MQ=255)                                                                                                                            ccAGGCAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGc              <  1:389391/140‑1 (MQ=255)                                                                                                                            ccAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGc              <  1:56481/140‑1 (MQ=255)                                                                                                                            ccAGGCAAAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGc              <  2:1004233/140‑1 (MQ=255)                                                                                                                             cAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGcc             >  2:1684774/1‑140 (MQ=255)                                                                                                                               ggCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTg           >  1:1712420/1‑140 (MQ=255)                                                                                                                                 cAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGAt         <  1:2260944/140‑1 (MQ=255)                                                                                                                                    aaaaaacCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAag      <  2:2129597/140‑1 (MQ=255)                                                                                                                                        aaaCCCCGCCGGTCGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgca  <  1:1428227/140‑1 (MQ=255)                                                                                                                                          |                                                                                                                                          GAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGG‑TAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCA  >  NC_000913/2001782‑2002055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑