Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,556,205	0	A	C	30.6%	131.0 / 26.4	73	S215R (AGT→AGG) ‡	rtcA	RNA 3'‑terminal phosphate cyclase
Reads supporting (aligned to +/- strand):  ref base A (46/4);  new base C (0/22);  total (46/27)
Fisher's exact test for biased strand distribution p-value = 8.35e-15
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

CCACCTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTT‑CGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCC  >  NC_000913/3556066‑3556343                                                                                                                                              |                                                                                                                                           ccaccTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTT‑CGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGaaaaa                                                                                                                                            >  2:71923/1‑140 (MQ=255) ccaccTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTT‑CGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCCGTTCATGCAGGGaaaaa                                                                                                                                            >  1:1074/1‑140 (MQ=255) ccaccTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTT‑CGACTTCAAGCGAGACGGCATTACCCGGCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGaaaaa                                                                                                                                            >  1:2072815/1‑140 (MQ=255)   accTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTT‑CGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACt                                                                                                                                          >  2:417449/1‑140 (MQ=255)     cTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTT‑CGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTcc                                                                                                                                        >  1:14257/1‑140 (MQ=255)         gcccTGACGCGTTTTTCCCCGACAAAAAAAAGGCTTTGGGTGATTTTTTCCTTTC‑CGACTTCAAGCGAGACGGTATTCCCCGGCCCCGGGTCGCGGGGCAGT‑TTATAAATATTCTTTTCATGCAGGAAAAACCCCCCCGc                                                                                                                                    <  2:309858/137‑1 (MQ=255)         gCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTT‑CGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGc                                                                                                                                    >  1:1039164/1‑140 (MQ=255)          cACTGCCGCGTTTTCCCCCGACGAAAAAAAGGCTTTCGGTGTTTTTTTCCCTTT‑CGACTTCAAGCGAGACGGTATTCCCCGCCCCCTGGTCGCGCGGCAGT‑TTATAAATTTTCTGTTCATGCAGGAAAAACCTCCCCGcc                                                                                                                                   <  2:1876177/140‑1 (MQ=255)             tGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTT‑CGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAgt                                                                                                                                >  1:953340/1‑140 (MQ=255)               aCGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTT‑CGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAgtgt                                                                                                                              >  1:714380/1‑140 (MQ=255)               aCGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTT‑CGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAgtgt                                                                                                                              >  1:1954488/1‑140 (MQ=255)                  cgcTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTT‑CGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGc                                                                                                                           >  1:2224654/1‑140 (MQ=255)                    cTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTT‑CGACTTCGAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGa                                                                                                                         >  1:1478314/1‑140 (MQ=255)                    cTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTT‑CGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGa                                                                                                                         >  1:2016186/1‑140 (MQ=255)                        ccACCGAGAAAAAAAAAGCGTTGGGTGATTTTTCCATTTT‑CGACTTCAAGCGAGCGGTTTTTCCCCGCCCCCGGGCCGCGCGGAGGT‑TTATAATTATTCTTTTCATGAAGGAAAAAACCCCCCGCCAGTGTAGCGATTTc                                                                                                                     <  2:432702/139‑1 (MQ=255)                           ccaacgaaAAAAAAGCTTTCGGTGATTTTTTCCCTTT‑CACCTTCAAGCGAGACGTTATTCCCCGCCCCCGGGCCGCGCGGCGGT‑TTATGAATATTCTGTTCAGGAGGGAAAAAACCCCCCGCCAGTGTAGCGATTTCACg                                                                                                                  <  2:1007347/137‑1 (MQ=255)                           ccGACAAAAAAAAGGTGTTGGGTTATTTTTTCCCTTT‑CGACTACAGGCGAGACGGTATTCCCCGCCCCCTGGTCGCGCGGCAGG‑TTATAAATATTCTGTTCATGGGGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACg                                                                                                                  <  2:1302788/140‑1 (MQ=255)                           ccGAAGAAAAAAAAGCGTTCGGTGATTTTTCCACTTT‑CGCCTCAAAGCGAGACGGTATTCCCCGGCCCCGGGTCGCGCGGCAGT‑TTATAAATTTTCTGTTCATGAAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACg                                                                                                                  <  2:1046384/140‑1 (MQ=255)                            cgacaaAAAAAAAGCTTTGGGTGATTTTTTCCCTTT‑CGACTTAAAGCGAGACGTTTTTCCCCGCCCCCTGGCCGCGCGGGAGT‑TTATAAATTTTTTGTTCAGGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGc                                                                                                                 <  2:1722172/140‑1 (MQ=255)                               cgacAAAAAAGCGTTCGGTGATATTTTCACTTT‑CGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCa                                                                                                              >  1:443798/1‑140 (MQ=255)                                 acAAAAAAGCGTTCGGTGATATTTTCACTTT‑CGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGc                                                                                                            >  1:1907440/1‑140 (MQ=255)                                          ggTTGGGTGATTTTTTCCTTTT‑CGACTTAAAGCGAGCGGTTATTCCCCGGCCCCTGGCCCGGCGGGGGG‑TTATGAATATTCTGTTCAGGCAGGAAAAACCTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGgcg                                                                                                   <  2:468182/139‑1 (MQ=255)                                          cGTTCGGTGATATTTTCACTTT‑CGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGgcg                                                                                                   >  1:222169/1‑140 (MQ=255)                                           gTTCGGTGATTTTTTCACTTT‑CGACTTAAAGCGAGACGGTATTCCCCGCCCCCGGGTCGCGCGGCAGT‑TTATGAATTTTCTGTTCATGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGgcgc                                                                                                  <  2:1224884/140‑1 (MQ=255)                                             tgggTGTTTTTTTCTTTTT‑CGACTTCAAGCGAGACGGTATTCCCCGGCCCCGGGTCGCGGGGCAGT‑TTATAAATATTCTGTTCAGGAAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCgg                                                                                                <  2:2016186/138‑1 (MQ=255)                                                 tGATTTTTTCCTTTT‑CGACTTCAAGCGAGACGGTATTCCCCGGCCCCGGGTCGCGCGGCGGG‑TTATAAATATTCTGTTCATGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGcaca                                                                                            <  2:1934339/140‑1 (MQ=255)                                                  ttatttttCCCTTTCCGACTCCAAGCGCGACGGTATTCCCCGCCCCCTGGTCGCGCGTCTGG‑TTATGAATATTCCTTTCAGGGGGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGcaca                                                                                            <  2:1074/136‑1 (MQ=255)                                                  gATTTTTTCTCTTT‑CGACTTCAAGCGAGACGTTATTCCCCGGCCCCTGGCCGCGCGGCAGT‑TTATGAATATTCTGTTCATGCAGGAAAAAACCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCacac                                                                                           <  2:2224654/140‑1 (MQ=255)                                                   attttttcttttt‑ctCCTTCAAGCGAGCCGGTATTCCCCGCCCCCTGGTCGCGCGGCAGT‑TTATGAATTTTCTGTTCATGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAcc                                                                                          <  2:1495504/137‑1 (MQ=255)                                                    ttttttCACTTC‑CGACTTCAAGCGAGACGGTATTCCCCGGCCCCGGGTCGCGCGGCAGT‑TTATAAATTTTCTGTTCATGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCa                                                                                         <  2:1292729/138‑1 (MQ=255)                                                    tatTTTCACTTT‑CGCCTTCAGGCGAGACGGTATTCCCGGGCCCCTGGTCGGGGGGCTGT‑TTATGAATATTTTTTTCATGCGGGAAAAATCTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCa                                                                                         <  2:1946556/140‑1 (MQ=255)                                                      ttttCACTTT‑CGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGc                                                                                       >  2:1260774/1‑140 (MQ=255)                                                           aCTTT‑CGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATa                                                                                  >  1:940357/1‑140 (MQ=255)                                                               t‑CGACTTCAAGCGAGAGGGTATTCCCCGGCCCCTGGCCGCGCGGCAGT‑TTATAAATATTCTGTTCATGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAAc                                                                              <  2:1907440/140‑1 (MQ=255)                                                               t‑CGACTCAAAGCGAGACGGTTTTCCCCGCCCCCTGGCCGCGCGGCAGT‑TTATAAATATTCTGTTCATGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAAc                                                                              <  2:622597/140‑1 (MQ=255)                                                                 cGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACt                                                                             >  2:36351/1‑140 (MQ=255)                                                                     ttCAAGCGGGCCGGTATTCCCCGGCCCCGGGTCGCGCGGCAGT‑TTATAAATATTCTGTTCAGGGAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTtctc                                                                         <  2:780015/140‑1 (MQ=255)                                                                         agggagaCGGTATTCCGCGGCCCCGGGT‑GCGGGGGGGGTTTAAGAATATTGTGTTCAGGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACg                                                                     <  2:663469/137‑1 (MQ=255)                                                                           cgggagggTATTCCCCGCCCCCTGGTCGCGGGGCAGG‑TTATAAATTTTTTGTTCAGGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCa                                                                   <  2:1039164/134‑1 (MQ=255)                                                                            gagcgggTATTCCCCGCCCCCGGGCCGCGCGGCAGT‑TTATAAATTTTCTTTTCATGAAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCAt                                                                  <  2:714380/135‑1 (MQ=255)                                                                                 ggTTTTCCCCGCCCCCGGGTCGCGCGGCAGT‑TTATAAATTTTCTGTTCATGCGGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGca                                                             <  1:2374622/140‑1 (MQ=255)                                                                                           ggCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTccc                                                   >  1:1464420/1‑140 (MQ=255)                                                                                           ggCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTccc                                                   >  2:639511/1‑140 (MQ=255)                                                                                             ccccTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc                                                 >  1:1597028/1‑140 (MQ=255)                                                                                             ccccTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc                                                 >  2:188750/1‑140 (MQ=255)                                                                                             ccccTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc                                                 >  1:1617866/1‑140 (MQ=255)                                                                                             ccccTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc                                                 >  1:2086896/1‑140 (MQ=255)                                                                                             ccccTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc                                                 >  1:199627/1‑140 (MQ=255)                                                                                             ccccTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc                                                 >  1:2257129/1‑140 (MQ=255)                                                                                             ccccTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc                                                 >  2:1196054/1‑140 (MQ=255)                                                                                             ccccTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc                                                 >  2:894354/1‑140 (MQ=255)                                                                                             ccccTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc                                                 >  2:2009988/1‑140 (MQ=255)                                                                                             ccccTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc                                                 >  2:2371773/1‑140 (MQ=255)                                                                                             ccccTGGTCGCGCGGCAGG‑GTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACACGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc                                                 >  2:632017/1‑140 (MQ=255)                                                                                                   gTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGc                                           >  2:838655/1‑140 (MQ=255)                                                                                                   gTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGc                                           <  1:894354/140‑1 (MQ=255)                                                                                                    ccgcgcgGCGGC‑TTATAAATTTTCTGCCCGTGGAGGAAAAAGCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGcc                                          <  2:1597028/139‑1 (MQ=255)                                                                                                     cgcgcgGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGTTCGCCa                                         <  1:842253/140‑1 (MQ=255)                                                                                                       cgcgGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAg                                       >  2:406746/1‑140 (MQ=255)                                                                                                       cgcgGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAg                                       >  2:96719/1‑140 (MQ=255)                                                                                                       cgcgGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAg                                       >  2:352275/1‑140 (MQ=255)                                                                                                       cgcgGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAg                                       >  1:957445/1‑140 (MQ=255)                                                                                                         cgGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGtt                                     >  2:1991021/1‑140 (MQ=255)                                                                                                           gCAGG‑TTATGAATTTTCTGTTCATGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGc                                   <  2:1478314/140‑1 (MQ=255)                                                                                                             gggtttATGATTTTTCTGTCCATGCAGGGAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCa                                  <  1:476454/136‑1 (MQ=255)                                                                                                             gagtttATGAATATTCTGTTCATGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCa                                  <  2:1954488/136‑1 (MQ=255)                                                                                                             gagtttATAAATTTTCTGTTCATGCAGGAAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCa                                  <  2:222169/136‑1 (MQ=255)                                                                                                             cggtttATAAATATTCTGTTCATGCAGGGAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCa                                  <  1:1001068/136‑1 (MQ=255)                                                                                                                         atTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACg                      >  2:1810950/1‑140 (MQ=255)                                                                                                                          ttCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGa                     >  2:1454620/1‑140 (MQ=255)                                                                                                                          ttCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGa                     >  1:2088377/1‑140 (MQ=255)                                                                                                                           tCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGAt                    >  2:546774/1‑140 (MQ=255)                                                                                                                              gTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGcc                 >  1:1862238/1‑140 (MQ=255)                                                                                                                              gTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGcc                 >  2:417849/1‑140 (MQ=255)                                                                                                                               ttCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCa                >  2:1837867/1‑140 (MQ=255)                                                                                                                               ttCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCa                >  1:1060567/1‑140 (MQ=255)                                                                                                                                tCATGCAGGGAAAACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCAc               <  1:1991021/140‑1 (MQ=255)                                                                                                                                    gCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGc           >  2:167790/1‑140 (MQ=255)                                                                                                                                        ggAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCgaga       >  2:1191086/1‑140 (MQ=255)                                                                                                                                        ggAAAAACCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCgaga       <  1:36351/140‑1 (MQ=255)                                                                                                                                        gaaaaacCTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCgaga       <  2:664941/138‑1 (MQ=255)                                                                                                                                         gAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGAc      >  1:1783970/1‑140 (MQ=255)                                                                                                                                         gAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTACACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGAc      >  1:2191073/1‑140 (MQ=255)                                                                                                                                           aaacCTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACtt    <  2:1060567/140‑1 (MQ=255)                                                                                                                                             aaCTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTcc  <  2:957445/140‑1 (MQ=255)                                                                                                                                              |                                                                                                                                           CCACCTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTT‑CGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGG‑TTATGAATATTCTGTTCATGCAGGGAAAAACTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCC  >  NC_000913/3556066‑3556343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑