| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 501,564 | 0 | A | C | 25.4% | 136.7 / 29.4 | 67 | *559E (TAA→GAA) | ybaL | putative transporter YbaL |
| Reads supporting (aligned to +/- strand): ref base A (46/4); new base C (0/17); total (46/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.78e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGC > NC_000913/501426‑501702 | ttAAGTTATCGTCGGTTCGTATGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑Ac > 1:2030367/1‑140 (MQ=255)ttAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑Ac > 1:923119/1‑140 (MQ=255)ttAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑Ac > 1:1244064/1‑140 (MQ=255) tAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑Acc < 1:63941/140‑1 (MQ=255) tAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑Acc < 2:811590/140‑1 (MQ=255) aaGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑Accc > 2:1918443/1‑140 (MQ=255) gTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCg > 1:1219086/1‑140 (MQ=255) tATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTc < 2:153269/140‑1 (MQ=255) aTCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTca > 2:1059098/1‑140 (MQ=255) tcgtcgGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTcac > 1:1018895/1‑140 (MQ=255) cgtcgGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTcacc > 2:625492/1‑140 (MQ=255) cgtcgGTTCGCAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTcacc > 1:2119685/1‑140 (MQ=255) ttCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCa > 1:1948045/1‑140 (MQ=255) aGATAAGGCGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTg > 2:1773183/1‑140 (MQ=255) aGATAAGGCGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTg > 2:1948248/1‑140 (MQ=255) aTAAGGCGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑CCCCCGTCCCC‑CCCTCACCCGCCGGTGGc < 1:1487874/140‑1 (MQ=255) aTAAGGCGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGc > 1:1242497/1‑140 (MQ=255) gCGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTc > 2:1627969/1‑140 (MQ=255) cGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTcc > 1:2108355/1‑140 (MQ=255) ttccccccgcATCTGGCATTTGG‑CTCTCGATGCCTGATGCGCCGCTGGCGCGTCTTATCATCCCTACATATTTTTCATATTTTACACCCGGCACCCCCCGTTT‑CCCCCGCCCCC‑CCCCCCCCCGCCGGTGGCGTTTCcag < 2:2119685/134‑1 (MQ=255) ttCGCGCCGCATCGGGCATTTGG‑CTCTCAATGCCTGAGGCGACGCGGGCGCGTCTTATCATGCCTAAATATTTTTCATTTTTTCCACCCGCCACCCCCCGTTT‑CCCCCGTCCCC‑CCCTCCCCCGCCGGTGGCGTTTCcag < 2:2108355/140‑1 (MQ=25) ttCCCGCCGCATCTGGCTTTTGG‑CTCTGGTTGCTTGAGGCGCCGCGGGCGCTTTTTATCATGCCTACTTTTTTTTCATTTTTTACACCCGGCAACCCCCGTTT‑CCCCCGTCCCC‑CCCTCCCCCGCCGGTGGCGTTTCcag < 2:1805923/140‑1 (MQ=255) ttCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCACCCACCGTTT‑ACCCCCTCCCC‑CCCTCACCCGCCGGTGGCGTTTCcag < 1:1918443/140‑1 (MQ=255) tccccgcggcTTCTGGCTTTTGG‑CTCGCGATGCCGGAGGCGGCGCTGGCGTGTCTTATCATGCCTAAATTTTTTTTATATTTGACATCCGGCAACCACCTTTT‑CCCCCGCCCCC‑CCCTCACCCGCCGGTGGCGTTTCcag < 2:401213/136‑1 (MQ=255) cACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCcagca > 2:2052946/1‑140 (MQ=255) ccgcATCTGGCTTTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCTTCTTATCATGCCTAAATTTTTTTCATTTTTTACATCCGGCACCCCCCTTTT‑CCCCCGTCCCC‑CCCCCCCCCGCCGGTGGCGTTTCCAGCAGTTc < 2:1507281/140‑1 (MQ=37) ccgcATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCTTTT‑CCCCCGTCCCC‑CCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTc < 2:703451/140‑1 (MQ=38) cgcATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTcc > 2:321887/1‑140 (MQ=255) cgcATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTcc > 1:1007220/1‑140 (MQ=255) cgcATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTcc > 1:851609/1‑140 (MQ=255) cgcATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACACCCGGCACCCACCGTTT‑CCCCCGTCCCC‑CCCTCACCCGCCGGTGGCGTTTCCAGCAGTTcc < 1:1192856/140‑1 (MQ=38) cgctttGGCTTTTGGCCTCTCGGTGCTTGAGGGGCCGCGGGGCCTTTTTATCATCCCTA‑TTTTTTTTTATTTTTTTCCCCCGGCAACCCCCTTTTCCCCCCGCCCCC‑CCCCCCCCCGCCGGTGGCGTTTCCAGCAGTTcc < 2:1681829/135‑1 (MQ=255) ccATCTGGCTTTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCTTTTTATCATGCCTACATTTTTTTCATATTTTCCACCCGGCACCCCCCGTTT‑CCCCCGTCCCC‑CCCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCa < 2:742675/139‑1 (MQ=37) cATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAg > 2:185084/1‑140 (MQ=255) ttggtttttGG‑CTCTCGATGCCTGATGCGCCGCGGGCGCGTTTTATCATGCCTACATTTTTTTCATATTTTACACCCGGCACCCACCGTTT‑CCCCCGTCCCC‑CCCCCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCAt < 2:1305923/134‑1 (MQ=255) tGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑CCCCCGTCACC‑CCCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACggg < 1:101967/140‑1 (MQ=255) ctcGATGCCTGATGCGACGCGGGCGCGTTTTATCATCCCTACATTTTTTTCATATTTTACACCCGGCAACCCCCGTTT‑CCCCCGCCCCC‑CCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGAtt < 2:1353849/140‑1 (MQ=255) gATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCa > 1:2026397/1‑140 (MQ=255) gcttGAGGCGCCGCTGGCGCCTTTTATCATGCTTACTTTTTTTTCATTTTTTCCCCCCGCCAACCCCCTTTT‑CCCCCGTCCCC‑CCCCCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGc < 2:923119/137‑1 (MQ=255) ggtGCGACGCGGGCGCGTTTTACCGTCCCTACTTATTTTTCATATTTTACACCGGGCACCCACCGTTT‑CCCCCGCCCCC‑ACCACACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGc < 2:1018895/138‑1 (MQ=255) gATGCGCCGCTGGCGCGTTTTATCATGCCTACTTTTTTTTCATTTTTTCCACCCGGCACCCCCCTTTT‑CCCCCGCCCCC‑CCCCCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGc < 2:1450670/140‑1 (MQ=255) aTGCGCCGCTGGCGCTTCTTATCATCCCTACATTTTTTTAATATTTTACATCCGGCACCCACCGTTC‑ACCCCGTCCCC‑CCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGcc < 2:1948045/140‑1 (MQ=255) aTGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGcc > 2:2247733/1‑140 (MQ=255) cgccGCTGGCGCTTTTTATCATCCCTACATTTTTTTCATTTTTTACACCCGCCACCCCCCTTTT‑CCCCCGCCCCC‑CCCCCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCAt < 2:1244064/137‑1 (MQ=255) gACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATc > 2:1382273/1‑140 (MQ=255) cTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTa > 1:1350166/1‑140 (MQ=255) gggCGCTTTTTATCATCCCTACTTTTTTTTCATTTTTTACATCCGGCACCCCCCTTTT‑CCCCCGCCCCC‑CCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTAc < 2:816672/139‑1 (MQ=255) gcgTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGa > 1:669118/1‑140 (MQ=255) cgTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGAt > 1:1914289/1‑140 (MQ=255) ttACCATGCCTCCTTTTTTTTCATGTTTTCCACCCGGCACCCCCCGTTC‑CCCCCGCCCCC‑CCCCCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGc < 2:669118/140‑1 (MQ=255) tATCATGCCTACATTTTTTTCATATTTTACATCCGCCAACCACCTTTT‑CCCCCGTCCCC‑ACCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGca < 1:777231/140‑1 (MQ=255) tGCCTACATTTTTTTCATATTTTACACCCGGCACCCACCGTTT‑CCCCCGTCCCC‑CCCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACg < 1:1301924/140‑1 (MQ=255) tGCCTACATTTTTTTCATATTTTACACCCGGCAACCCCCGTTT‑CCCCCGTCACC‑CCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACg < 1:321887/140‑1 (MQ=255) gCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGt > 1:1089849/1‑140 (MQ=255) ccTACATATTTTTCATTTTTTCCACCCGGCACCCCCCTTTT‑CCCCCGTCCCC‑CCCCCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGtt < 2:851609/140‑1 (MQ=255) ccTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGtt > 1:405853/1‑140 (MQ=255) ccTACACATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGtt > 2:1352013/1‑140 (MQ=255) cTATATATTTTTAATATTTTACACCCGCCACCCACCTTTC‑CCCCCGTCCCC‑CCCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTc < 2:1242497/140‑1 (MQ=255) cTACATTTTTTTCATTTTTTACATCCGGCAACCACCGTTT‑CCCCCGTCCCC‑CCCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTc < 1:1672446/140‑1 (MQ=255) tacttttttttAATTTTTTCCACCCGGCACCCCCCTTTT‑CCCCCGCCCCC‑CCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCg < 2:2115/134‑1 (MQ=255) tACATTTTTTTCATTTTTTACACCCGGCAACCCCCGTTT‑CCCCCGTCCCC‑CCCCCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCg < 1:2229907/140‑1 (MQ=255) aCATTTTTTTCATTTTTTCCACCCGGCACCCCCCGTTT‑CCCCCGTCACC‑CCCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCgg < 1:1948248/140‑1 (MQ=255) aCATTTTTTTCATTTTTTACTGCCGGCAACCCCCTTTC‑CCCCCGCCCCC‑CCCCCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCgg < 1:1627969/140‑1 (MQ=255) aCATTTTTTTCATATTTTACATCCGGCACCCACCTTTT‑CCCCCGTCCCC‑CCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCgg < 1:286917/140‑1 (MQ=255) aCATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCgg > 1:411802/1‑140 (MQ=255) cATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGt > 1:402881/1‑140 (MQ=255) tttttCATATTTTACCTCCGGCACCCCCCTTTT‑CCCCCGCCCCC‑CCCTCACCCGCCGGTGCCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGata < 2:8049/140‑1 (MQ=255) tttgttatTTGCCACCCGGCAACCCCCTTTT‑CCCCCGTCACC‑ACCACGCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGAtata < 1:1453218/135‑1 (MQ=255) tttCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGAtata > 1:596632/1‑140 (MQ=255) ttCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATAc > 2:1523818/1‑140 (MQ=255) tCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACg > 1:821983/1‑140 (MQ=255) atatTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGcc > 1:1206393/1‑140 (MQ=255) tatTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCa > 1:541172/1‑140 (MQ=255) tatTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCa > 2:380918/1‑140 (MQ=255) ttttACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACt > 2:2123693/1‑140 (MQ=255) ttttACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACt > 1:1594141/1‑140 (MQ=255) tACACCCGCCAACCCCCGTTT‑CCCCCGTCCCC‑CCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCa < 2:402881/140‑1 (MQ=255) tCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGt > 1:2156656/1‑140 (MQ=255) cccgacacccccCTTT‑CCCCCCTCCCCAACCCCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGt < 2:2030367/134‑1 (MQ=255) ccGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTc > 2:1278934/1‑140 (MQ=255) ggCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCAt > 2:1952754/1‑140 (MQ=255) gCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATa > 1:2288677/1‑140 (MQ=255) gCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATa > 2:1809849/1‑140 (MQ=255) cGTTT‑ACCCAGTCTCC‑CCCCCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGgcgc < 1:625492/140‑1 (MQ=255) tttt‑CCCCCGCCACC‑CCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACCGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGcgcg < 1:1598358/139‑1 (MQ=255) ttt‑CCCCCTTCCCC‑CCCTCCCCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCgg < 1:722927/140‑1 (MQ=255) ttt‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCgg > 1:1697908/1‑140 (MQ=255) ttt‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCgg > 2:1724504/1‑140 (MQ=255) t‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGc > 2:1484892/1‑140 (MQ=255) | TTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGG‑CTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTT‑ACCCCGTCACC‑ACCTCACCCGCCGGTGGCGTTTCCAGCAGTTCCAGCATGGTACGGGCGATTTCACGCTCGCCCATCACTACCTGATTCGCACCACGTTCGGTGATATACGCCACTTCATCGTCATAATGGGCGCGGGC > NC_000913/501426‑501702 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |