| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 268964 | 103 (1.230) | 3 (0.040) | 3/262 | 7.7 | 2.9% | intergenic (‑4/+325) | ykfA/perR | CP4‑6 prophage; putative GTP‑binding protein YkfA/putative transcriptional regulator PerR |
| ? | NC_000913 | = 269030 | 101 (1.280) | intergenic (‑70/+259) | ykfA/perR | CP4‑6 prophage; putative GTP‑binding protein YkfA/putative transcriptional regulator PerR | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/268818‑268964‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatcactCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATCAGAG < NC_000913/269030‑268892 CCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATT > 2:99388/1‑140CCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATT < 2:685734/140‑1CCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATT > 1:763791/1‑140CCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATT < 1:580504/140‑1CCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGGAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAAAATTATT > 2:125932/1‑140 CAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTC < 1:218878/140‑1 ACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCAT < 1:1254228/140‑1 ACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCAT < 2:886004/140‑1 CACCGGTTTTACCCATAATGCCGATCATTGGCTCGTAGTTACTTAACTGGTTAATTTGCTGCAGAAGCAGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAGACGACTTCAAACCTTCAGAATTATTCATC > 1:846794/1‑140 CACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATC > 2:770328/1‑140 CGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACT > 1:84584/1‑140 CGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACT > 2:172910/1‑140 GTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTCT > 2:1071249/1‑140 TTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGTAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTA < 1:1299110/140‑1 TGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTT < 1:1071249/140‑1 TCACTCTGAACATACGCAATTAACTGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATC > 1:253568/1‑140 TCACTCTGAACATACGCAATTAACGGCGGAATCTCACGCTTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATC > 1:125932/1‑140 TCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATC > 1:1133935/1‑140 TCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATC > 2:958697/1‑140 TCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATC > 2:841948/1‑140 TCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATC > 2:422292/1‑140 TCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATC > 2:232400/1‑140 TCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATC > 1:99388/1‑140 TCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATC > 1:186694/1‑140 TCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATC > 1:611794/1‑140 TCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATC > 1:603101/1‑140 TCACTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTACCGCAATGGGTATC > 2:1172727/1‑140 CTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATCAGA > 1:1399618/1‑140 CTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATCAGA > 2:45038/1‑140 CTCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATCAGA < 2:976218/140‑1 TCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATCAGAG > 1:703925/1‑140 CCAACACCGGTTTTACCCATAATGCCGATCACTGGCTCGTAGTTAGTTAACTGGTTAATTTGCTGCAGAAGCCGCTCTGATACCCATTGCGGCAGATCAGCAAGCGATTGCTGAAACGACTTCAAACCTTCAGAATTATTCATCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/268818‑268964‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatcactCTGAACATACGCAATTAACGGCGGAATCTCACGATTCTACCGTTTTTTATTATTTTTCAGAGGAGTAGTGATGAATAATTCTGAAGGTTTGAAGTCGTTTCAGCAATCGCTTGCTGATCTGCCGCAATGGGTATCAGAG < NC_000913/269030‑268892 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |