Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,651,554	G→A	pseudogene (43/1197 nt)	intQ →	Qin prophage; putative defective integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,651,554	0	G	A	100.0%	293.9 / NA	85	pseudogene (43/1197 nt)	intQ	Qin prophage; putative defective integrase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (47/38);  total (47/38)

GTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAA  >  NC_000913/1651420‑1651686                                                                                                                                       |                                                                                                                                     gTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTa                                                                                                                                 >  1:926526/1‑140 (MQ=25)   tCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACg                                                                                                                               <  1:677240/140‑1 (MQ=37)   tCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACg                                                                                                                               <  2:510667/140‑1 (MQ=37)   tCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACg                                                                                                                               <  2:637266/140‑1 (MQ=37)   tCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACg                                                                                                                               <  2:617235/140‑1 (MQ=37)   tCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACg                                                                                                                               <  1:722596/140‑1 (MQ=37)   tCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACg                                                                                                                               <  1:1385973/140‑1 (MQ=37)     gAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGct                                                                                                                             <  1:730039/140‑1 (MQ=255)       gCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGctcc                                                                                                                           <  2:1306069/140‑1 (MQ=255)       gCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGctcc                                                                                                                           <  2:648093/140‑1 (MQ=255)        cATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGctcct                                                                                                                          <  1:904226/140‑1 (MQ=255)        cATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGctcct                                                                                                                          <  2:857805/140‑1 (MQ=255)         aTTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGctcctc                                                                                                                         >  2:1233852/1‑140 (MQ=255)            ataACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCtgt                                                                                                                      >  1:899062/1‑140 (MQ=255)                 gAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCtgtttgtt                                                                                                                 <  1:1134150/140‑1 (MQ=255)                  aaTGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTa                                                                                                                >  2:608215/1‑140 (MQ=255)                   aTGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTAc                                                                                                               <  1:1375091/140‑1 (MQ=255)                   aTGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTAc                                                                                                               <  2:85271/140‑1 (MQ=255)                       cATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCaa                                                                                                           >  2:1098092/1‑140 (MQ=255)                         tCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATa                                                                                                         >  2:731691/1‑140 (MQ=255)                                aGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTg                                                                                                  <  2:574474/140‑1 (MQ=255)                                aGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTg                                                                                                  <  1:306519/140‑1 (MQ=255)                                aGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTg                                                                                                  <  2:343242/140‑1 (MQ=255)                                aGTGCGCTGGGCTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTg                                                                                                  >  1:1078751/1‑140 (MQ=255)                                  tGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGgt                                                                                                >  2:9857/1‑140 (MQ=255)                                  tGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGgt                                                                                                >  1:1408686/1‑140 (MQ=255)                                    cgcTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGgtgt                                                                                              >  1:829500/1‑140 (MQ=255)                                      cTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGttt                                                                                            >  1:56370/1‑140 (MQ=255)                                      cTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGttt                                                                                            >  1:1106287/1‑140 (MQ=255)                                          gTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGa                                                                                        <  1:941639/140‑1 (MQ=255)                                            tATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACt                                                                                      <  1:803607/140‑1 (MQ=255)                                              tcgctcgcCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTTGTGTTTTCGACTAt                                                                                    >  1:393600/1‑140 (MQ=255)                                                 ctcgcCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCa                                                                                 <  1:466563/140‑1 (MQ=255)                                                  tcgcCACGGGAATATCTGCGGCAGCGGCCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCaa                                                                                <  1:332800/140‑1 (MQ=255)                                                   cgcCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCaaa                                                                               >  1:617138/1‑140 (MQ=255)                                                   cgcCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCaaa                                                                               >  2:1279649/1‑140 (MQ=255)                                                   cgcCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCaaa                                                                               >  2:25216/1‑140 (MQ=255)                                                     ccACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAAc                                                                             <  1:318693/140‑1 (MQ=255)                                                               atCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCcctc                                                                   <  2:488117/140‑1 (MQ=255)                                                                tCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCcctcc                                                                  <  1:608215/140‑1 (MQ=255)                                                                   gCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCa                                                               <  2:1028341/140‑1 (MQ=255)                                                                     ggCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACg                                                             <  2:53605/140‑1 (MQ=255)                                                                     ggCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACg                                                             >  2:1180958/1‑140 (MQ=255)                                                                          cGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATc                                                        >  1:618247/1‑140 (MQ=255)                                                                              cTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGa                                                    <  1:478458/140‑1 (MQ=255)                                                                                       ggTTAAGTGATAACAGATGTCTAGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGGGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTgg                                           >  2:871416/1‑140 (MQ=255)                                                                                         ttAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTg                                         <  1:731691/140‑1 (MQ=255)                                                                                            aGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAgg                                      >  2:1258787/1‑140 (MQ=255)                                                                                            aGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAgg                                      >  2:63488/1‑140 (MQ=255)                                                                                            aGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAgg                                      >  1:663120/1‑140 (MQ=255)                                                                                            aGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAAACTGGAAAAATTTGGTGAgg                                      <  2:1408686/140‑1 (MQ=255)                                                                                             gTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGc                                     <  1:1211521/140‑1 (MQ=255)                                                                                                aTAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCg                                  >  1:1049178/1‑140 (MQ=255)                                                                                                aTAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCg                                  >  2:1309032/1‑140 (MQ=255)                                                                                                   aCAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACa                               <  2:899062/140‑1 (MQ=255)                                                                                                   aCAGATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACa                               >  1:330556/1‑140 (MQ=255)                                                                                                      gATGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGa                            >  2:498661/1‑140 (MQ=255)                                                                                                       aTGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGAt                           >  2:1350234/1‑140 (MQ=255)                                                                                                       aTGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGAt                           >  2:54603/1‑140 (MQ=255)                                                                                                       aTGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGAt                           >  2:1106361/1‑140 (MQ=255)                                                                                                        tGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGAtt                          <  2:1078751/140‑1 (MQ=255)                                                                                                        tGTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGAtt                          >  2:268278/1‑140 (MQ=255)                                                                                                         gTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGAttt                         <  1:700746/140‑1 (MQ=255)                                                                                                         gTCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGAttt                         >  1:1392367/1‑140 (MQ=255)                                                                                                          tCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTa                        >  1:1270538/1‑140 (MQ=255)                                                                                                          tCTGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTa                        >  1:29396/1‑140 (MQ=255)                                                                                                            tGGTAATATAGGGTCAAATCCACAGGTAAACTACGCTCCCCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGAGAGGCCCGACAAGATTTAAc                      >  2:597042/1‑140 (MQ=255)                                                                                                            tGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGTCCGACAAGATTTAAc                      >  1:1124881/1‑140 (MQ=255)                                                                                                            tGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAAc                      <  1:1258787/140‑1 (MQ=255)                                                                                                            tGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAAc                      >  1:221182/1‑140 (MQ=255)                                                                                                            tGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAAc                      <  2:521530/140‑1 (MQ=255)                                                                                                            tGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAAc                      >  1:203858/1‑140 (MQ=255)                                                                                                            tGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAAc                      >  1:923589/1‑140 (MQ=255)                                                                                                            tGGAAATATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAAc                      <  1:63488/140‑1 (MQ=255)                                                                                                               aaaTATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGAc                                <  2:638600/127‑1 (MQ=255)                                                                                                               aaaTATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGAc                                >  1:638600/1‑127 (MQ=255)                                                                                                               aaaTATAGGGGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCAt                   >  2:1199157/1‑140 (MQ=255)                                                                                                                 atatAGGAGCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATaa                 >  1:1155573/1‑140 (MQ=255)                                                                                                                      ggggCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGaa            >  1:1083682/1‑140 (MQ=255)                                                                                                                       gggCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAAc           >  1:94234/1‑140 (MQ=255)                                                                                                                         gCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTg         >  1:871848/1‑140 (MQ=255)                                                                                                                         gCAAATCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTg         >  1:739412/1‑140 (MQ=255)                                                                                                                            aaTCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGTCAAGATTTAACCATAAAAGAACTGGCt      >  1:197154/1‑140 (MQ=255)                                                                                                                            aaTCCACAGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCt      >  2:989148/1‑140 (MQ=255)                                                                                                                                cacaGGTAAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGaaa  <  1:899846/140‑1 (MQ=255)                                                                                                                                       |                                                                                                                                     GTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAA  >  NC_000913/1651420‑1651686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑