Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG32.1% 184.1 / 20.8 106T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (21/51);  new base G (34/0);  total (55/51)
Fisher's exact test for biased strand distribution p-value = 1.35e-13
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 109 total aligned reads displayed.

AGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568367‑4568641
                                                                                                                                         |                                                                                                                                           
    gCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaaaa                                                                                                                                       >  1:510310/1‑140 (MQ=255)
         aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGTGGCATGGCGGGTAAAAAAACGTg                                                                                                                                  <  1:1082872/140‑1 (MQ=255)
         aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaaaaaagag                                                                                                                                  >  2:674818/1‑136 (MQ=255)
         aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaaaaaaaag                                                                                                                                  >  2:1106374/1‑136 (MQ=255)
              cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATa                                                                                                                             <  1:455065/140‑1 (MQ=255)
                tCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaac                                                                                                                           <  1:926572/140‑1 (MQ=255)
                  ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaa                                                                                                                         <  1:488597/140‑1 (MQ=255)
                  ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATaaaaa                                                                                                                         >  2:478023/1‑140 (MQ=255)
                  ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATaaaaa                                                                                                                         >  2:643616/1‑140 (MQ=255)
                    cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaaac                                                                                                                       <  2:79065/140‑1 (MQ=255)
                       tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAACGGCATAaaaaaaaaa                                                                                                                    >  2:851367/1‑139 (MQ=255)
                       tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCATAACAaacaac                                                                                                                    >  1:116377/1‑140 (MQ=255)
                         aaaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAACAAACAACTc                                                                                                                  >  1:405811/1‑140 (MQ=255)
                          aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                 <  1:1247846/140‑1 (MQ=255)
                                 tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCg                                                                                                          <  2:560137/140‑1 (MQ=255)
                                      caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCATAACAAACAACTCCTTGTCCGGGG‑aa                                                                                                    >  1:777323/1‑140 (MQ=255)
                                            tGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAAAAACTCCTTTTCCGGAG‑AAacccca                                                                                              >  2:383359/1‑138 (MQ=255)
                                              aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACg                                                                                           >  1:657551/1‑140 (MQ=255)
                                              aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGGGGCATAAAAAACAACACCTTTTCCCGGG‑AACCCC‑AACg                                                                                           >  1:1148985/1‑140 (MQ=255)
                                              aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAAAAAACAACTCCTTTTCCGGAG‑AACCCC‑AACg                                                                                           >  1:568486/1‑140 (MQ=255)
                                              aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGAG‑AACCCC‑CACg                                                                                           >  1:371279/1‑140 (MQ=255)
                                              aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACGGGCATAAAAAAAAACTCCCTGTCCCGGG‑AAACCC‑CAcc                                                                                           >  2:639565/1‑139 (MQ=255)
                                                cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGGATAAAAAAAAAACCCCTTTCCGGGG‑GACCCC‑CACggg                                                                                         >  2:1049537/1‑140 (MQ=255)
                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGCGGCATAAAAAAAAAATCCTTGTCCGGAG‑AACCCC‑AACgggg                                                                                        >  2:145350/1‑140 (MQ=255)
                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAACAACTCCTTTTCCGGAG‑AACCCC‑CACgggg                                                                                        >  1:480456/1‑140 (MQ=255)
                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGAAAACAAAAAACTCCCTGTCCGGAG‑AACCCC‑CACgggg                                                                                        >  2:1215144/1‑140 (MQ=255)
                                                     gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTCGAAAAACGTGGCACAAAAAAAAACCCCCAGTCCAGAG‑GAAACC‑AACTGGGgaaa                                                                                    >  2:37453/1‑140 (MQ=255)
                                                     gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCATAACAAAAAACACCTTTTCCCGAG‑AAACCC‑AACGGGGaaaa                                                                                    >  2:739810/1‑140 (MQ=255)
                                                     gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGGATAACAAAAAAATCCTTGTCCGGAG‑AACCCC‑AACGGGGaaaa                                                                                    >  2:885231/1‑140 (MQ=255)
                                                       tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACg                                                                                  <  1:643616/140‑1 (MQ=255)
                                                        ggATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGa                                                                                 >  2:42646/1‑140 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACATGGCATAAAAAACAAAACCTTGTGCGGAG‑AACCCC‑AACGGGGAAAAAGaa                                                                                >  1:2807/1‑140 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGaa                                                                                >  1:66708/1‑140 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑CACGGGGGAAACGaa                                                                                >  1:1187650/1‑140 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCAAAACAAAAAAAACCTTGTCCGGGG‑AACCCC‑AACGGGGGAAAAGaa                                                                                >  2:1163250/1‑140 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAACGGGGTAACAAAAAACTCCTTGTCCGGGGAAACCCC‑AAGGGGGAAAAcaa                                                                                 >  1:190645/1‑138 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGaaa                                                                               >  1:1384118/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGCAAAAAAAAAAACTCCTTGTCCCGAG‑AACCCC‑CACGGGGGAAAAGaaa                                                                               >  1:479708/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAAGGGGATAACAAAAAACACCTTGTCCGGAG‑AACCCC‑AACGGGGGAAAAGaaa                                                                               >  2:62667/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAAAAACTCCTTGTCCGGGG‑AACCCC‑CACGGGGAGAACGaaa                                                                               >  2:629742/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGAGGGATAACAAAAAAAACCCTGTCCCGAGAAACCCC‑CACGGGCAAACCGaa                                                                                >  2:1314176/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGGATAAAAAAAAAATCCCTTTCCGGAG‑AAACCC‑CACGGGGGAAAAGaaa                                                                               >  1:727034/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTAGCGGCATGGCGGGGAAAAAAACAAGGCATAACAAAAAACCCCTTGTCCGGGG‑AACCCC‑AACGGGGGAAAAGaaa                                                                               >  1:23898/1‑140 (MQ=255)
                                                           tCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAAt                                                                              <  1:765479/140‑1 (MQ=255)
                                                              gATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCa                                                                           <  1:1106374/140‑1 (MQ=255)
                                                               aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCaa                                                                          <  2:782651/140‑1 (MQ=255)
                                                               aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACAGGCATAACAAACAACTCCCTGTCCGGAG‑AACCCCAAACGGGGAAAA‑GAAAATCaa                                                                          >  1:1115088/1‑140 (MQ=255)
                                                                   gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTGAAAAAAACTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑CAAAGGGAAAAAGAAATTCAATAcc                                                                      >  2:26246/1‑140 (MQ=255)
                                                                   gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATAcc                                                                      >  1:334127/1‑140 (MQ=255)
                                                                   gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGGATAACAAACAACTCCTTGTCCCGAG‑AAACCC‑AACGGGGGAAAAGAAAATCAATAcc                                                                      >  2:21880/1‑140 (MQ=255)
                                                                   gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAAAAAACAACTCCCTGTCCGGAG‑AACCCC‑CACCGGGGAAACGAAAATCaaaaac                                                                      >  2:834863/1‑136 (MQ=255)
                                                                    tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCCTAACAAAAAACTTCTTTGCCGGAG‑AACCCC‑AACGGGGGAAACCAAAATTAAAAccc                                                                     >  2:798114/1‑139 (MQ=255)
                                                                    tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAACTCCCTGTCCGGAG‑AAACCC‑CACGGGGGAAAAGAAAATCaaaaacc                                                                     >  2:1181354/1‑135 (MQ=255)
                                                                                cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg                                                         <  1:23899/140‑1 (MQ=255)
                                                                                 agcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAATGGGATAAAAAAAAAAACCTTGTCCGGAG‑AACCCC‑CACGGGGGAAAAGAAAATCAAAAACGTCGGGAATGACGa                                                        >  2:456317/1‑140 (MQ=255)
                                                                                   caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                      <  1:315067/140‑1 (MQ=255)
                                                                                   caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                      <  1:383359/140‑1 (MQ=255)
                                                                                   caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAACAAAAAACACCCTGTCCGGAG‑AACCCC‑AACGGGGAAAAAGAAAATCAATACCCTCGGGAATGAAGaaa                                                      >  2:362767/1‑140 (MQ=255)
                                                                                     aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                    <  1:739810/140‑1 (MQ=255)
                                                                                     aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAAAAACACCCAGTCCGGAG‑AACCCC‑AACGGGGGAAAGCAAATTTAAAAACGGCGGGAATGACGAAAgg                                                    >  2:853544/1‑140 (MQ=255)
                                                                                     aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGGAAACGAAATTCAATACCGTCGGTAATGACGaaaag                                                    >  1:58838/1‑138 (MQ=255)
                                                                                     aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGTTCGGAG‑AACCCC‑AACGGGGGAAACGAAAATCAATACCGTCGGGAAAGACGaaaag                                                    >  2:581631/1‑138 (MQ=255)
                                                                                      aGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCACGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGc                                                   <  2:238145/140‑1 (MQ=255)
                                                                                        tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg                                                 <  1:679615/140‑1 (MQ=255)
                                                                                        tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg                                                 <  1:96381/140‑1 (MQ=255)
                                                                                           tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCCTTTTCCGGGG‑AAACCC‑CACGGGGGAAAAGAAAATTAATAACGTCGGGAATTACGAAAAGCAgggg                                              >  2:710201/1‑138 (MQ=255)
                                                                                            aCAAAATCAACGCCAACGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTga                                             <  1:37453/140‑1 (MQ=255)
                                                                                              aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                           <  2:505061/140‑1 (MQ=255)
                                                                                              aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                           <  1:896734/140‑1 (MQ=255)
                                                                                                 aTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACATGGGATAAAAAACAACTCCTTGTCCGGGG‑AACCCC‑AACGGGGGAAACGAAAATCAATAACGTCGGGAATGACGAAAGGCAGGGGAGAAgg                                        >  2:712564/1‑140 (MQ=255)
                                                                                                  tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACACCTTTTCCGGAG‑AACCCC‑AACGGGGAAAAAGAAATTCAAAACCCTCGGTAATGACGAAAGGCAGGTGAGAAggg                                       >  2:92688/1‑140 (MQ=255)
                                                                                                  tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAAAGAAAATCAATACCGTCGGGAATGACGAAAAGCAGGGGAGAAggg                                       >  2:410559/1‑140 (MQ=255)
                                                                                                     aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaa                                    <  2:255413/140‑1 (MQ=255)
                                                                                                      cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAAc                                   <  1:1181354/140‑1 (MQ=255)
                                                                                                           tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                              <  2:479708/140‑1 (MQ=255)
                                                                                                                aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                         <  2:1384118/140‑1 (MQ=255)
                                                                                                                aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                         <  2:1115088/140‑1 (MQ=255)
                                                                                                                    aCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGt                     <  2:58838/140‑1 (MQ=255)
                                                                                                                      aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTTCTTGTCCGGAG‑ATCCCC‑AACGGGGAAAACGAAATTCAATTCCGGCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                   <  2:362582/140‑1 (MQ=255)
                                                                                                                      aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                   <  2:1388465/140‑1 (MQ=255)
                                                                                                                      aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                   <  1:674818/140‑1 (MQ=255)
                                                                                                                      aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                   <  1:1273804/140‑1 (MQ=255)
                                                                                                                      aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                   <  1:798114/140‑1 (MQ=255)
                                                                                                                      aGCGTAGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                   <  2:23898/140‑1 (MQ=255)
                                                                                                                       gCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt                  <  2:2807/140‑1 (MQ=255)
                                                                                                                            gcggcATGGCGGGGAAAAAAACGTGGCATAAAAAACAACTCCTTTTCCGGAG‑GACCCC‑AACGGGGAAAAAAAAAATCAATAACCTCGGGAATGACGAAAGGCAGGGGAGAAGGGCAACGAGACTGCAAATATACTGAAtt             >  2:1295398/1‑140 (MQ=255)
                                                                                                                              ggcATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTc           <  2:371279/140‑1 (MQ=255)
                                                                                                                              ggcATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTc           <  1:42646/140‑1 (MQ=255)
                                                                                                                               gcATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCa          <  1:211711/140‑1 (MQ=255)
                                                                                                                                 aTGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg        <  1:362767/140‑1 (MQ=255)
                                                                                                                                   ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  2:657551/140‑1 (MQ=255)
                                                                                                                                   ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:456317/140‑1 (MQ=255)
                                                                                                                                   ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  2:777323/140‑1 (MQ=255)
                                                                                                                                   ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:507689/140‑1 (MQ=255)
                                                                                                                                   ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  2:116377/140‑1 (MQ=255)
                                                                                                                                    gCGGGTAAAAAAAAAGGGCATAACAAACAACTCCTTGTCCCGAG‑AACCCC‑AACGGGGGAAACGAAAATTAATACCGTCGGGAAAGACGAAAGGGAGGGGAGAAAGGGAACGAGACTGCAAAAGTACTGAATTTCATGTaa     >  2:90643/1‑140 (MQ=255)
                                                                                                                                      gggTAAAAAAACGTGGCATAAAAAAAAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATc   >  2:1017147/1‑140 (MQ=255)
                                                                                                                                       ggTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCa  <  1:712564/140‑1 (MQ=255)
                                                                                                                                       ggTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCa  <  1:1215144/140‑1 (MQ=255)
                                                                                                                                       ggTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCa  <  1:1102820/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                           
AGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568367‑4568641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑