mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 47.9% | 19.6 / 40.4 | 48 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,111,747 | 0 | G | T | 38.9% | 59.4 / 27.8 | 36 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 4,296,060 | 0 | C | T | 34.0% | 60.9 / 41.9 | 50 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,098,155 | 0 | A | C | 29.5% | 114.3 / 12.1 | 61 | L140F (TTA→TTC) | rhaS | DNA‑binding transcriptional activator RhaS |
| * | NC_000913 | 2,001,918 | 0 | A | C | 27.6% | 51.1 / 10.1 | 29 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 4,287,719 | 0 | T | A | 20.8% | 132.4 / 10.6 | 53 | intergenic (‑348/‑45) | acs/nrfA | acetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase |
| Marginal new junction evidence (lowest skew 10 of 17 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 64 (1.040) | 8 (0.140) | 8/260 | 4.1 | 12.8% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 49 (0.850) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 2518036 = | 77 (1.250) | 4 (0.090) +41 bp |
3/196 | 5.1 | 9.5% | intergenic (‑204/+5) | pdeA/alaX | putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala |
| ? | NC_000913 | 2521180 = | 31 (0.500) | noncoding (8/76 nt) | valY | tRNA‑Val | |||||
| * | ? | NC_000913 | 2518036 = | 77 (1.250) | 4 (0.090) +41 bp |
3/196 | 5.1 | 8.2% | intergenic (‑204/+5) | pdeA/alaX | putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala |
| ? | NC_000913 | 2521058 = | 50 (0.810) | noncoding (8/76 nt) | valX | tRNA‑Val | |||||
| * | ? | NC_000913 | 2518036 = | 77 (1.250) | 4 (0.090) +41 bp |
3/196 | 5.1 | 7.5% | intergenic (‑204/+5) | pdeA/alaX | putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala |
| ? | NC_000913 | 2520938 = | 63 (1.030) | noncoding (8/76 nt) | valU | tRNA‑Val | |||||
| * | ? | NC_000913 | 781075 = | 57 (0.930) | 4 (0.090) +41 bp |
3/196 | 5.1 | 7.8% | noncoding (8/76 nt) | valZ | tRNA‑Val |
| ? | NC_000913 | 2518036 = | 77 (1.250) | intergenic (‑204/+5) | pdeA/alaX | putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala | |||||
| * | ? | NC_000913 | 780772 = | 56 (0.910) | 4 (0.090) +41 bp |
3/196 | 5.1 | 7.9% | noncoding (8/76 nt) | valT | tRNA‑Val |
| ? | NC_000913 | 2518036 = | 77 (1.250) | intergenic (‑204/+5) | pdeA/alaX | putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala | |||||
| * | ? | NC_000913 | = 3057967 | 63 (1.030) | 4 (0.070) | 4/256 | 5.6 | 7.4% | coding (444/1233 nt) | serA | phosphoglycerate dehydrogenase |
| ? | NC_000913 | = 3059816 | 42 (0.740) | coding (64/894 nt) | argP | DNA‑binding transcriptional dual regulator ArgP | |||||
| * | ? | NC_000913 | 2518092 = | 75 (1.220) | 3 (0.060) | 3/242 | 5.9 | 6.0% | noncoding (25/76 nt) | alaX | tRNA‑Ala |
| ? | NC_000913 | 2521198 = | 28 (0.520) | noncoding (26/76 nt) | valY | tRNA‑Val | |||||
| * | ? | NC_000913 | 2518092 = | 75 (1.220) | 3 (0.060) | 3/242 | 5.9 | 5.2% | noncoding (25/76 nt) | alaX | tRNA‑Ala |
| ? | NC_000913 | 2521076 = | 44 (0.820) | noncoding (26/76 nt) | valX | tRNA‑Val | |||||
| * | ? | NC_000913 | 2518092 = | 75 (1.220) | 3 (0.060) | 3/242 | 5.9 | 4.6% | noncoding (25/76 nt) | alaX | tRNA‑Ala |
| ? | NC_000913 | 2520956 = | 58 (1.090) | noncoding (26/76 nt) | valU | tRNA‑Val | |||||