| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3388949 = | 50 (0.780) | 3 (0.050) | 3/274 | 6.6 | 5.9% | coding (178/933 nt) | aaeA | aromatic carboxylic acid efflux pump membrane fusion protein |
| ? | NC_000913 | 3389041 = | 47 (0.750) | coding (86/933 nt) | aaeA | aromatic carboxylic acid efflux pump membrane fusion protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGCCAGTACCTGATAATAAGCAACATCGGCTTGCGCTTCCTCAAGCGCCTTTTGATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAGGCATTAAAAATTGCGATGAAGGCCAGAATGACTAA > NC_000913/3388823‑3389078 | gtgCCAGTACCTGATAATAAGCAACATCGGCTTGCGCTTCCTCAAGCGCCTTTTGATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCa > 2:1039122/1‑140 (MQ=255) gCCAGTACCTGATAATAAGCAACATCGGCTTGCGCTTCCTCAAGCGCCTTTTGATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGa < 2:1050496/140‑1 (MQ=255) aGTACCTGATAATAAGCAACATCGGCTTGCGCTTCCTCAAGCGCCTTTTGATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAAc > 2:102779/1‑140 (MQ=255) ataataAGCAACATCGGCTTGCGCTTCCTCAAGCGCCTTTTGATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGgcg > 2:211801/1‑140 (MQ=255) taaGCAACATCGGCTTGCGCTTCCTCAAGCGCCTTTTGATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGAt > 2:380644/1‑140 (MQ=255) aCATCGGCTTGCGCTTCCTCAAGCGCCTTTTGATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAac > 1:374639/1‑140 (MQ=255) aCATCGGCTTGCGCTTCCTCAAGCGCCTTTTAATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCTCCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAac < 1:589901/140‑1 (MQ=255) cATCGGCTTGCGCTTCCTCAAGCGCCTTTTGATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAacg > 2:510355/1‑140 (MQ=255) cATCGGCTTGCGCTTCCTCAAGCGCCTTTTGATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAacg > 2:318356/1‑140 (MQ=255) cATCGGCTTGCGCTTCCTCAAGCGCCTTTTGATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCACAacg > 2:165088/1‑140 (MQ=255) aTCGGCTTGCGCTTCCTCAAGCGCCTTTTGATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAacga > 1:678296/1‑140 (MQ=255) ggCTTGCGCTTCCTCAAGCGCCTTTTGATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGt < 1:581799/140‑1 (MQ=255) gCTTGCGCTTCCTCAAGCGCCTTTTGATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTc > 1:769288/1‑140 (MQ=255) ccTCAAGCGCCTTTTGATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAg > 2:491986/1‑140 (MQ=255) ccTCAAGCGCCTTTTGATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAg > 2:856480/1‑140 (MQ=255) cAAGCGCCTTTTGATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAgcgc < 2:769288/140‑1 (MQ=255) cTTTTGATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACTTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCAc < 1:885038/140‑1 (MQ=255) ttttGATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCAcg < 1:856480/140‑1 (MQ=255) tttGATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGGCAGCGCTAAAGCGCGCGTCAcgc > 2:119580/1‑140 (MQ=255) cgcgGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAggg > 1:37534/1‑140 (MQ=255) cTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGAtt < 2:632510/140‑1 (MQ=255) cTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGAtt < 2:252349/140‑1 (MQ=255) cTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGAtt < 1:211801/140‑1 (MQ=255) cTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGAtt < 1:518747/140‑1 (MQ=255) cTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGAtt < 2:467782/140‑1 (MQ=255) cTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCACAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGAtt < 1:165088/140‑1 (MQ=255) ggTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCGCCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCg < 2:566467/140‑1 (MQ=255) ggTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCg < 2:678296/140‑1 (MQ=255) gTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCgg < 2:722673/140‑1 (MQ=255) tCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGgt < 1:899604/140‑1 (MQ=255) tGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTaa < 1:491986/140‑1 (MQ=255) tGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTaa < 1:114643/140‑1 (MQ=255) cAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGAccc < 1:406753/140‑1 (MQ=255) tATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGTGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAgg > 1:542519/1‑140 (MQ=255) tCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTGGGTGTAATAGATCCAGGCa > 1:86083/1‑140 (MQ=255) tCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAGGCa > 1:362589/1‑140 (MQ=255) tCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAGGCa > 1:131969/1‑140 (MQ=255) cTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAGGCAt > 1:323966/1‑140 (MQ=255) ccTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAGGCATTaaa < 1:905901/140‑1 (MQ=255) tttttCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAGGCATTAAAAAt > 2:413499/1‑140 (MQ=255) tttttCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAGGCATTAAAAAt > 2:706723/1‑140 (MQ=255) ttCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAGGCATTAAAAATTGc > 2:805483/1‑140 (MQ=255) ccAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAGGCATTAAAAATTGCGATg < 1:205434/140‑1 (MQ=255) tGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAGGCATTAAAAATTGCGATGAAGGc < 2:525215/140‑1 (MQ=255) gTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGTGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAGGCATTAAAAATTGCGATGAAGGCCa < 2:542519/140‑1 (MQ=255) aTCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAGGCATTAAAAATTGCGATGAAGGCCAGaa < 2:924892/140‑1 (MQ=255) cATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAGGCATTAAAAATTGCGATGAAGGCCAGAATg < 2:946635/140‑1 (MQ=255) aCATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAGGCATTAAAAATTGCGATGAAGGCCAGAATGACTaa > 2:275581/1‑140 (MQ=255) aCATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAGGCATTAAAAATTGCGATGAAGGCCAGAATGACTaa < 1:984702/140‑1 (MQ=255) aCATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAGGCATTAAAAATTGCGATGAAGCCCAGAATGACTaa > 1:120749/1‑140 (MQ=255) | GTGCCAGTACCTGATAATAAGCAACATCGGCTTGCGCTTCCTCAAGCGCCTTTTGATAGCGCGGCTGGTCGATGGTGAACAGTATCTGTCCTTTTTTCACCAGCTGGTTATCATGAACATTCACCTGGGTAATGAGTCCAGAAACGTCCGGCGCGATCGCAACGACGTCAGCGCTAAAGCGCGCGTCACGCGTCCAGGGGGATTCGGTGTAATAGACCCAGGCATTAAAAATTGCGATGAAGGCCAGAATGACTAA > NC_000913/3388823‑3389078 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |